Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d043329_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:3:196702363:196707971:-1 gene:Zm00001d043329 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence	ATGGGTTCTCCGAGCATGTCACTTTCTGCTTCTCCATATCATATGGTCGGACCATCTCAT GGGCTGCCATACACGGGAGGCATGCCTTATGGTGCTCTTAACCTGCCTGTAAACAATCCA GTGCAGAATGATTGGTCGAATCATGTTAACCCTTTCACTGGGGAGCATCTTAATCTACTG CCCAATTTATTGCACAAACAATTATCACTTCCTAATAGCCCAATGTCGTCACTCCTATTT TCTCAGCATCAGCAGAGATTGGCACAGGTCCAATCATCCCATCAGAATTACCTCAATATA ATGCCACACGTCCTATATCCCCATCACTCCGCAGAGATTACAAGCAGGTTTGGTTCTGTT GGCAGTTCCCATTCATCAAGAGACAAGAGATCAAGGTCGGGGAAGGGAAAACATAACATT CGATTCTCTCAACTACCATCTGATACTGGTAGCCAGAATGGTGACAGCGGAGGTATAAAG TTTAGATCCAAGTACATGTCATCTGAAGAGATCGAATCAATCTTAAGAATGCAGCATTCT GCAAGCCACAGCAGCGATCCTTATATTGTTGATTACTATCATCAAGCTTGTATGGCAAAA AGGGGTGCCACTTCTAAGCAAAAGACCAATTTCTCCCCAACATCAATGAAAGATGTACCA TCCAAGTCTCGATCCAGCAGTGATCAGCACACATATCTTCAGGTTGATGCTCTTGGAAGA GTATCTTTTTCTTCCATACGGAGGCCTCGGTCTCTTCTTGAAGTCGACCATCCTTCATCT GCTGATGGCTCTCATGATCAGAAGTCCACTGTGAGGCCCCTGGAGAAAGAACCAATGCTT GCAGCAAGAGTCACTGTTGAAGACGCCCTTTGCCTTGTTCTTGAGGTTGATGACACTGAC CGTCTGTTGCAGTCTAGCCAGTCACAGGACAACATTTTCGAACTGAAACGAAGACGGCAA GTCCTCCTGGAAGGTCTAGCTGCATCATTGCAGTTTGTTGATCCTCTCGGACCCAGCAAA TCTGGTCATTCATCTGGGTCAGCCCTGAAGGACGATGTTATTTTTCTGCGCATTGTTTCT CTGCCCAAAGGACGTAAGTTTTTAGCACGTTACCTTCGGCTTCTTGTCCCTGGCAGCGAG TTGACCCGGATAGTATGCATGGCTATTTTTCGCCATTTGAGGTTCTTGTTTGGGGGTTTG CCATCAGACTCTAGTGCAGCAGAAACTACAGTTGCTCTTGCGAAGACTGTTTCATCTTGT GTGCATCACATGGAACTTGGTGCTCTTAGTGCCTGCCTTGCTGCTGTTGTTTGTTCGTCT GAACAGCCACCTCTGCGCCCTCTTGGTAGCTCTGCTGGTGATGGGGCTTCTCTTGTTATT AAATCAGTACTGGACCGAGCAACTGAGTTACTGACTGATCGCCATGCTGCAGCCAGCTAC ACTGTGCCAAACCGTGCTCTCTGGCAGGCATCATTTGATGCTTTCTTTGGGCTTCTAACA AAATACTGTGTCAGTAAGTTTGAAAGTATCCAACAGATGTTTGTCACACAGACACCGAGC TCAGGAATCGGACCTGAGGCTTCCAAAGCTACTAGTAAGGAGATGCCTGTTGAGCTACTT CGTGCAAGCCTTCCTCATACAAACGAGCAGCAGCGCCAGCGGCTTCTTGATTTTGCTCAG AGATCCATGCCAGTAACAGGTTTCAATCCCTCAGGTGCTAGAGGTGGGCACATCACTTCA GAATCTGTTCCTGGATGA

Peptide Sequence

PEP ID	Zm00001d043329_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:3:196702363:196707971:-1 gene:Zm00001d043329 transcript:Zm00001d043329_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence	MGSPSMSLSASPYHMVGPSHGLPYTGGMPYGALNLPVNNPVQNDWSNHVNPFTGEHLNLL PNLLHKQLSLPNSPMSSLLFSQHQQRLAQVQSSHQNYLNIMPHVLYPHHSAEITSRFGSV GSSHSSRDKRSRSGKGKHNIRFSQLPSDTGSQNGDSGGIKFRSKYMSSEEIESILRMQHS ASHSSDPYIVDYYHQACMAKRGATSKQKTNFSPTSMKDVPSKSRSSSDQHTYLQVDALGR VSFSSIRRPRSLLEVDHPSSADGSHDQKSTVRPLEKEPMLAARVTVEDALCLVLEVDDTD RLLQSSQSQDNIFELKRRRQVLLEGLAASLQFVDPLGPSKSGHSSGSALKDDVIFLRIVS LPKGRKFLARYLRLLVPGSELTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSSC VHHMELGALSACLAAVVCSSEQPPLRPLGSSAGDGASLVIKSVLDRATELLTDRHAAASY TVPNRALWQASFDAFFGLLTKYCVSKFESIQQMFVTQTPSSGIGPEASKATSKEMPVELL RASLPHTNEQQRQRLLDFAQRSMPVTGFNPSGARGGHITSESVPG

Transcript Sequence

Transcript ID	Zm00001d043329_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:196702363:196707971:-1 gene:Zm00001d043329 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence	GAATCCTTCTCGCCAACAGCCCAACACATGGAAAAGAGAGCTGCAGAAGCAGACGCCTAA AACATGGCCGCAGTATGCTCCTCATTCACCTGCCGCGTCTAGTATTTCGGAAATATTTTG TATTTATTAAAGCAGGAGAGGGAGGCAAGCAGCAGCCGAGGCCGAGCTATCTCTCTATTT CCCCCTCGCCCAGCTCAGATCCGAAGCCTGAAGGAAATCGCGCCAACAGGCCCTAGCCCC AGATGCGCGCCGCCGCTTGCTGCCTGCGCTGCTGCTACTCCTTCTAGGGGTCTTGCGGCG ATGCTGGGCGTCGAGCCCGAGAGCGGAGGCGCCGCGTCCTCCTCCGCCGCAGAGAATTTT GACGCTGGCCAGTACGCCTTCTTCGGGAAGGAGCCACTCGAGGGGTTCGAGCTCGGGGGT TTGGAGGAAGCCGGCAGTGATGGCAATGGCGGTGGATTCAGCGGGCCAGATGAGGGGCTG TACCGGCTAAACTCGGTTGGAGACGAGGTGCAGATTCTAGAACCGTCATATCCACAAAGT TGCCATATTTTTTCTTTATAAAATAAAATTATGTGCCTCTCGTTCCTTGTTTGTGCGTTT GGTTCCCATGTATCATGTATGCTTTATTTCTTTCCCGTACATGTCAATTTTTGCATGGGC TGACTGATAGTGGAAGACTAGTGCGGGGAGTAATCCAGAATATATTCCCGTGGGCCGCAA GGGCAAAATTTAGTGGAATTGAGGTTCATATCAGTAGTGCTCCAAAATCGGGTACTTGAG TGGTTGTAGTCGAATATTATGTGCTTGATCGTAGGCACCCTAGATGTGTGGAATAAATGG TTATACGTTTGTTTGGTAGCACACGCGCTTCGTTATTGGATTGAGTTATGCACGACAGAG ATGGAAGACAAGCATGCTTGCACACATCCTTTTGTTGAATTAAGACACTATCGACAATAA CTAGAACACTGTAGTTGTTGTTTGTTTTTAGAAATGATAGTAACACTGAATGATCTATTT GGATGAAGTGACAAAAATGAAATAAATAGTGTTCGCAGTGACCTTTCTATCACAGGTGTT TGATATTTTGGTGTGGTTGACCTTCTGGAATACTTTTCATTGTGTTGGTTGGCCCTCAAA TACTTTTTAGGGCACAAACTAACTTATCTTCTGCGTCTTGGGATCCATAGTTGATTGCAA GGATAACCACAAGGGCTCATTTTACAATGAACTAATTTCAAATGTTGACGATAGTACCAC TTGTTGAAATGTTGGTAGCTAATGAGTAATGACAAGTTCCATGACCTACTTTTAAAGGGT ACATGTTAATTACTTGGAATTAACCAGCACATATACAACTGTTATCTGGAGTTAATTATG ATGATCAAAGTCCAGATGCAGTACTTGAAGATGCAAGTAGCTCTAGTGTCAACCTTTGAA TTGATAACCTTTGAAGCTGATGTTCTATTGGAGGTGCATGCATGTGTAATTTGGGTTGCT CTCTATACTGCTATACATGGCACTTTTTTTTACGCTTGGTTTCTTTTCATTCTGAATTCT GAAGCTTAATATTTATAGCCTCATGATTCAATTCCAACTATTGTGCTATGCAGATTGACG ATCAGAGTAACTTGTCTGACATTGATGATCTTGCAAGCACCTTCGCTAAGGTATGTTACT TGTTGCTTCAGCGTTTCATTGTGGGACTCTTGTTTTGACACTTGACTTTATCTGGCTTTT GTGTATTTGCTTTGATGAGTTTATGCTCCAGCTGTTGCTCCTTTTAGTCGCAGTTTTTTA TGGTCCCAGTTATACGAGTAGCTAACTCTCATTTAAATTTGTATCTAGGTAATTGAAATG TTATGAGAAGAATGGTTATATATATTTTGTTAATCGAATCTGAGTTATCAATGGAACCTG AGACCATTGAAATTTTCGCTATCACCATAGCTAACAGACTTTTATTAGGCAGACCAGTGA GGCAGTGCCCCCAGTGGGGCTGGATAATTGACACAGCTTAAAGACACGTATGCACTTTTG CCATGACAATGATATGAATCATGACCTACATTTTTCAAATCTTAGGCACCAGTTAAGGCC GTTTTGCCCCTATATTCCTAGGCTGTGGCAATTGAACATATTTTAAGGATGATATTCTTT TTCTAAGGGTAATCTTGCATTGCTCCCTTATGGATTTATTTATTTATATGGCTTTTATTT TAGCCTTTCCTTTTGTGTTTGCTTGTTGTTATGTTTTTTTTCTGTTATTACATCATGTTG TTATTACATGGCACACAATGAAAATTCACTTGTTTCACTGACAGTTGAACCGAAGCATTA GTGGAATCCGGAATCCTGGTGTTATTGGGGACAGGAGATCCATTTCAAGAGGAAGTTCTT TAACTCTTGACTGGCCTGAGGATGTGGAGTTTTCAAACTGGGTAGATCAAGATGTATTTG AAAATGAGGAATTCCAGGAAAGTAAAAGATGGTGGTCATCCAATTCTTCAGTGCAGCAAG GGGATTCCAACTCCAGACCACTAAGTCGAACATCTTCCTACCCTCAGCAGCCACTGCAGC ACCGGTCAAGTGAACCTATCGTTTTACCAAAGACTTCTTCATTTACCTCATTTCCACCAC CTGTTGCTGGTGGTGGTAGAGCCCCTTACCCTGCTCAAGGCCTTACACGTCATGGGAGCA TTCCATCAATTGGCGCTGGGCTCCAAATGGGTTCTCCGAGCATGTCACTTTCTGCTTCTC CATATCATATGGTCGGACCATCTCATGGGCTGCCATACACGGGAGGCATGCCTTATGGTG CTCTTAACCTGCCTGTAAACAATCCAGTGCAGAATGATTGGTCGAATCATGTTAACCCTT TCACTGGGGAGCATCTTAATCTACTGCCCAATTTATTGCACAAACAATTATCACTTCCTA ATAGCCCAATGTCGTCACTCCTATTTTCTCAGCATCAGCAGAGATTGGCACAGGTCCAAT CATCCCATCAGAATTACCTCAATATAATGCCACACGTCCTATATCCCCATCACTCCGCAG AGATTACAAGCAGGTTTGGTTCTGTTGGCAGTTCCCATTCATCAAGAGACAAGAGATCAA GGTCGGGGAAGGGAAAACATAACATTCGATTCTCTCAACTACCATCTGATACTGGTAGCC AGAATGGTGACAGCGGAGGTATAAAGTTTAGATCCAAGTACATGTCATCTGAAGAGATCG AATCAATCTTAAGAATGCAGCATTCTGCAAGCCACAGCAGCGATCCTTATATTGTTGATT ACTATCATCAAGCTTGTATGGCAAAAAGGGGTGCCACTTCTAAGCAAAAGACCAATTTCT CCCCAACATCAATGAAAGATGTACCATCCAAGTCTCGATCCAGCAGTGATCAGCACACAT ATCTTCAGGTTGATGCTCTTGGAAGAGTATCTTTTTCTTCCATACGGAGGCCTCGGTCTC TTCTTGAAGTCGACCATCCTTCATCTGCTGATGGCTCTCATGATCAGAAGTCCACTGTGA GGCCCCTGGAGAAAGAACCAATGCTTGCAGCAAGAGTCACTGTTGAAGACGCCCTTTGCC TTGTTCTTGAGGTTGATGACACTGACCGTCTGTTGCAGTCTAGCCAGTCACAGGACAACA TTTTCGAACTGAAACGAAGACGGCAAGTCCTCCTGGAAGGTCTAGCTGCATCATTGCAGT TTGTTGATCCTCTCGGACCCAGCAAATCTGGTCATTCATCTGGGTCAGCCCTGAAGGACG ATGTTATTTTTCTGCGCATTGTTTCTCTGCCCAAAGGACGTAAGTTTTTAGCACGTTACC TTCGGCTTCTTGTCCCTGGCAGCGAGTTGACCCGGATAGTATGCATGGCTATTTTTCGCC ATTTGAGGTTCTTGTTTGGGGGTTTGCCATCAGACTCTAGTGCAGCAGAAACTACAGTTG CTCTTGCGAAGACTGTTTCATCTTGTGTGCATCACATGGAACTTGGTGCTCTTAGTGCCT GCCTTGCTGCTGTTGTTTGTTCGTCTGAACAGCCACCTCTGCGCCCTCTTGGTAGCTCTG CTGGTGATGGGGCTTCTCTTGTTATTAAATCAGTACTGGACCGAGCAACTGAGTTACTGA CTGATCGCCATGCTGCAGCCAGCTACACTGTGCCAAACCGTGCTCTCTGGCAGGCATCAT TTGATGCTTTCTTTGGGCTTCTAACAAAATACTGTGTCAGTAAGTTTGAAAGTATCCAAC AGATGTTTGTCACACAGACACCGAGCTCAGGAATCGGACCTGAGGCTTCCAAAGCTACTA GTAAGGAGATGCCTGTTGAGCTACTTCGTGCAAGCCTTCCTCATACAAACGAGCAGCAGC GCCAGCGGCTTCTTGATTTTGCTCAGAGATCCATGCCAGTAACAGGTTTCAATCCCTCAG GTGCTAGAGGTGGGCACATCACTTCAGAATCTGTTCCTGGATGATGTAACTGAAGGAGAC ACACAAGGGCAAAGAGTCAATGCTTTTAAACATTGATGAGATGGTCTTCAGCTGATAATT GTTGTATCTGAAGACATGCATGCCCCATTATAAGTTGTGAGCGAGCTTGGAGAAGTTCCG ATTGCTCAGGAAAGTAGCCTTCACTTCAGGTTGTGACGTAAGTTTAGGTTTCAGAGTAAT CGAATAGACCAGTGAAATGTTCCTTATGTGGGTCATTTAATATAGTACCCACCTGATGAT ATCATAATACTGGAACAGGAAATGTACCCCTTCACATTTCTACTAGAGTCGATGTTCTTC GTAGGCCATTGTGGACTGGTTTGCACATTTACTGGGCATGTATTTGTTTATATTCTGACA TACTGTTATTGAGCT