Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043309_T013
CDS Infomation

cds chromosome:B73_RefGen_v4:3:195736252:195743124:-1 gene:Zm00001d043309 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosyl hydrolase family protein
Sequence

ATGGTTCGGGGATCAAGACCATTAGGCCAGACTATTTCAAAGAAATTTTCAGACATGAGA
TACTCCAATATTTCCTGGCCATTCCTTCTACTGCTATGTTTTGTTTCGATGGCAGATGCA
GAGTACATGAAGTACAAGGATCCAAAGCAACCTATTAACTCTAGAATCAGGGATCTTATC
GGTAGGATGACCCTTGCTGAAAAAATTGGCCAAATGACACAGATAGAACGCCAGGTTGCA
TCTGCAAATGTCATGAAACAGTACTTTATAGGAAGCATCTTAAGTGGTGGTGGAAGTGTT
CCTTCTCCCCAGGCCAGTCCTGCAATTTGGGTGAACATGGTCAATGAATTTCAGAAAGGT
GCCTTGTCAACGCGTCTAGGAATTCCATTGATTTATGGAATTGATGCTGTTCATGGTAAT
AACAATGTCTACAACGCCACTTTATTCCCTCATAACATTGGACTTGGAGCTACAAGGGAT
CCTGGCCTCATAAAAAGAATTGGTGAAGCAACTGCTCTTGAAGTGCGTGCGACAGGCATT
CAATATACTTTTGCTCCATGTATTGCAGTTTGCAGAGATCCAAGATGGGGTCGGTGCTAT
GAGAGCTACAGTGAGGATCACAAGGTTGTGCAGCAGATGACAGATATTATCCTTGGTTTG
CAGGGTGAGATCCCAGTCAATCATACCAAGGGAGTTCCATATGTAGCTGGGAAGGATAAG
GTTGCTGCTTGTGCTAAACACTATGTTGGTGATGGTGGAACTCATAATGGAATCAATGAG
AATAATACAATCATTGATGAGCATGGGCTGCTAAGCATTCACATGCCACCATATTATGAC
TCTATCATAAAGGGTGTTGCTACTGTTATGGTTTCTTATTCAAGCTTGAATGGTGTAAAA
ATGCATGCCAATCATGACTTAGTCACTGGATACCTTAAATCCAAGCTGCATTTTAGAGGT
TTCGTGATATCTGACTGGCTAGGAGTGGACCGTATCACCTCACCTCCTGGCGCAAACTAT
ACTTATTCTGTGCAAGCTGGAATTAATGCTGGCATTGATATGGTGATGGTGCCATACAAT
TACACTGATTACATTAATGATCTCACTTCTCTCGTTCACAAGGGTGTCATCAATATAAGC
AGAATTGATGATGCTGTGAAGCGGATCCTTCGAGTCAAATTTACAATGGGCCTGTTTGAG
AACCCTTTAGCTGATCTTAGTTTTGCAGAGCAGCTTGGAAAGAAGGGACAACAATTCTTG
ATGCGATAA

Peptide Sequence

PEP ID

Zm00001d043309_P013
PEP Infomation

pep chromosome:B73_RefGen_v4:3:195736252:195743124:-1 gene:Zm00001d043309 transcript:Zm00001d043309_T013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosyl hydrolase family protein
Sequence

MVRGSRPLGQTISKKFSDMRYSNISWPFLLLLCFVSMADAEYMKYKDPKQPINSRIRDLI
GRMTLAEKIGQMTQIERQVASANVMKQYFIGSILSGGGSVPSPQASPAIWVNMVNEFQKG
ALSTRLGIPLIYGIDAVHGNNNVYNATLFPHNIGLGATRDPGLIKRIGEATALEVRATGI
QYTFAPCIAVCRDPRWGRCYESYSEDHKVVQQMTDIILGLQGEIPVNHTKGVPYVAGKDK
VAACAKHYVGDGGTHNGINENNTIIDEHGLLSIHMPPYYDSIIKGVATVMVSYSSLNGVK
MHANHDLVTGYLKSKLHFRGFVISDWLGVDRITSPPGANYTYSVQAGINAGIDMVMVPYN
YTDYINDLTSLVHKGVINISRIDDAVKRILRVKFTMGLFENPLADLSFAEQLGKKGQQFL
MR

Transcript Sequence

Transcript ID

Zm00001d043309_T013
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:195736252:195743124:-1 gene:Zm00001d043309 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosyl hydrolase family protein
Sequence

GAATGCCAAACGTCGTTTCGTACCGTGTGCAAGTGCAACAAATGCTGTTTCCATCTGCCT
GCCCTCTTTCAGCGCGTGCCCCCGAATGTTCCTTCCGAAAGCACCGCGCTCGCCTACAGA
TCACGACACCTCGCACCGCCGCTCCCACTTCCGGCCTCGCCGGTGCGTGCATGTGCGCGC
CAGGGACGCCAATTGAGCTCGGCTCCAGCACGCAATCGGCTGCAGAGTGAGCTCAGAGCT
CACCCTCTCCCTCTGCCGCTGCTCCGCTGGCCTCTTGAATTCTGTTCATGGTTCGGGGAT
CAAGACCATTAGGCCAGACTATTTCAAAGAAATTTTCAGACATGAGATACTCCAATATTT
CCTGGCCATTCCTTCTACTGCTATGTTTTGTTTCGATGGCAGATGCAGAGTACATGAAGT
ACAAGGATCCAAAGCAACCTATTAACTCTAGAATCAGGGATCTTATCGGTAGGATGACCC
TTGCTGAAAAAATTGGCCAAATGACACAGATAGAACGCCAGGTTGCATCTGCAAATGTCA
TGAAACAGTACTTTATAGGAAGCATCTTAAGTGGTGGTGGAAGTGTTCCTTCTCCCCAGG
CCAGTCCTGCAATTTGGGTGAACATGGTCAATGAATTTCAGAAAGGTGCCTTGTCAACGC
GTCTAGGAATTCCATTGATTTATGGAATTGATGCTGTTCATGGTAATAACAATGTCTACA
ACGCCACTTTATTCCCTCATAACATTGGACTTGGAGCTACAAGGGATCCTGGCCTCATAA
AAAGAATTGGTGAAGCAACTGCTCTTGAAGTGCGTGCGACAGGCATTCAATATACTTTTG
CTCCATGTATTGCAGTTTGCAGAGATCCAAGATGGGGTCGGTGCTATGAGAGCTACAGTG
AGGATCACAAGGTTGTGCAGCAGATGACAGATATTATCCTTGGTTTGCAGGGTGAGATCC
CAGTCAATCATACCAAGGGAGTTCCATATGTAGCTGGGAAGGATAAGGTTGCTGCTTGTG
CTAAACACTATGTTGGTGATGGTGGAACTCATAATGGAATCAATGAGAATAATACAATCA
TTGATGAGCATGGGCTGCTAAGCATTCACATGCCACCATATTATGACTCTATCATAAAGG
GTGTTGCTACTGTTATGGTTTCTTATTCAAGCTTGAATGGTGTAAAAATGCATGCCAATC
ATGACTTAGTCACTGGATACCTTAAATCCAAGCTGCATTTTAGAGGTTTCGTGATATCTG
ACTGGCTAGGAGTGGACCGTATCACCTCACCTCCTGGCGCAAACTATACTTATTCTGTGC
AAGCTGGAATTAATGCTGGCATTGATATGGTGATGGTGCCATACAATTACACTGATTACA
TTAATGATCTCACTTCTCTCGTTCACAAGGGTGTCATCAATATAAGCAGAATTGATGATG
CTGTGAAGCGGATCCTTCGAGTCAAATTTACAATGGGCCTGTTTGAGAACCCTTTAGCTG
ATCTTAGTTTTGCAGAGCAGCTTGGAAAGAAGGGACAACAATTCTTGATGCGATAAAGTC
TACCGTTGCTGACTCGACGTCTGTTGTCTACTCTGAGAACCCCGATGACAGTTTCATGAA
GCACAATGACTTCTCATTCGCTATCGTCGTTGTTGGCGAGCCACCATACGCTGAAACAGT
TGGCGATAGCACCGACCTCACTATGCTAGACCCTGGTCCAGACACGATCAGAACTGTGTG
TGCTGCAGTTAAATGTGCAGTAGTCATCATTTCTGGTCGTCCCATTGTGATTGAGCCGTA
TGTTCCATTAGTGGAAGCGCTTGTTGCAGCTTGGCTTCCGGGAACCGAAGGTCAGGGTGT
CGCAGATGTACTCTTTGGAGACTACGGTTTCACAGGCAAGCTCCCGCACACCTGGTTCAA
GTCTGTCGACCAACTGCCCATGAATGTGGGAGACCTACAGTACGATCCACTCTACCCTTT
CGGCTTCGGTTTGATGATAAATTCATCATTGCCAGGGTTCTCTGGTGTTGACAATCTGGG
ATATAGGAAGCAAAGAGTGCTATTTGCTGTGCTGTGTTCTCTACTGTCATTGGTTCTAAT
CAGTTAATGAATTGGGCGTAGATAGTATTTCAACACATAGCTGCCCTTTTGTAGTTCTCA
TATGATTAGAGTGTTACTAATCTAGCTTTAGCGATTGTTAGCTGCCAAATGAGTCACTGG
ACGTCAATCAATCTATTATCTATCTATCTACTAGATGATTC