Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043287_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:3:194440836:194449517:-1 gene:Zm00001d043287 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exonuclease 1
Sequence

ATGCATCGGGTTAACATGTTGCGGCATTTTGGTGTCAGACCAATTCTTGTATTTGATGGA
GGCCTTCTGCCAATAAAGAGCTATCAAGAGGGGAAGCGAGCAAGGTCAAGAAAGGAAAAC
CTTGAGCGTGCCAGGGAACATGAGGCTGCTGGGAACTCACGTGCTGCTTTTGAGTGCTAT
CAGAAGGCTGTTGACATTACACCTAGAATTGCTTCTGAACTGATTGAGGTACTGAAGAAA
GAAAATGTTAATTATATTGTTGCACCTTATGAAGCAGATGCGCAAATGACATTCTTATCT
GTTAATAAACTTGTTGATGCTGTGATCACTGAGGATTCAGATTTGATACCATTTGGTTGT
TCTAGAATTATTTTCAAAATGGACAAATTTGGGCAAGGTGTTGAATTTCAGATTACACGC
CTAGAGCAAAACAGAGAGCTTGACTTTAATGGATTCACAAGACAGATGTTACTTGAGATG
TGTATTTTAAGTGGCTGTGACTATCTCCCCTCATTGCCAGGAATGGGCGTTAAACGAGCT
CATGCACTCATCCAAAAGCTGAAGTGTCACGAAAAGGTGATCAAGCACCTGAGGTATGGT
GCTGTTTCTGTTCCACCTCAATATGAAGAGGACTTCAAGAAAGCAATCTGGGCATTTAAG
TTCCAAAGGGTCTACGATCCTGCTACAGAAGATATTATTCATTTGTCAAGTGTGCCTCAA
AGCCTCATTGAAGATTTGGAATTTTTAGGCCCATGGTTACCACAGAATATTGCCAAAGGC
ATTGCTCTAGGGAACATTGATCCACTCACGAAGGAACCATTCGAGATCAATCCAGAGTGC
AGTGCACCTTCTGTTCATAAGGTTTGTCCAACCAGAGAGCCTATTGCACCTTCAAATGGG
AGGAAGAAACTAGATTTGCCTGTGCAGAAAAATATATTGACCAACTATTTCTGCTTAGCA
TCCCTTGAGGCAAAACGGAAATTCAGGGCGCCTAAAGTAACACATAAGCAACAAATATTG
AATGAAGCTTTGCCTAGCCCTCAAGCTCAAGGCTCTGCTACCTCTGATTCAGTTGAAGAT
ACTAGGTTGCCAACAGATCGCATTCAAGCTTCTCAATGTAGTTCTGAGCATTTAAGCTCT
GAACCTCCTCAAAATGACCCAATCAGTGTTGGCTCTCAGTGTAGTTCTGAGCGTTTCAGC
TGTGAGTACCCCCTCGATGATTCAGCCAACATTTCACAATGTAGTTCACTTGATGGTGGT
AGTGATCCTCCTTACAAGGATACTGGCAATAAAGACAGAAAGGTTGAGGCTGGCTACGAC
AACAAAAATAGAATACCTACAAGTCCTTGCATAATGGGAAATTTACCCTGGACATCAGAG
CCATTTTTAGTTCCCCATAACGTGGGACCATCTATACCAGTTCAACATTATACTGAAAGC
ACTGTGGCCTCTAATAATAATGGCATTACCGTAAGTTCATACTTCAAAACAGCAAACAAG
AGAATTTGCACAGATCAAGGAGACCAGTTAGATGATGACTATGATGTTAGTACTGGTAAT
CTTTGTGGAGATCAACTGAGGAAATCTGGCATGTTGAAGAGAAGAAAGCTTTCTGGCATC
CAAAAGTTTGAAGATGAAACTTTACAGCCGATTCATTCTGACGATAGTCCACCATTCGTT
GATGAAGGTCAAGATACAGATGATCCTGACGATACAAATATAAGAACTGAAGGAAGATTT
GGATGCAATGTTTCCCATGTGAATACATACAGTGGAATTGCAGAAAAATCAATGGATAAG
TTTGCTGCATTGATATCATCTTTCAGATACCCCGGCCCCCGTGCCAGTGGCCTTCGTGCT
CCTTTAAAGGATGTGAAAAACACACTTTCTGTGAGATCTATTCTTAAAGCTCCAGAAAAA
GACACATTCAGACGCACAGCAAAGAAAACAGGTCTAGGCCCCCCTTCAAAAAGCAGATAT
ACAAGTGATGATAAGGGAAGTGCTGCCAGCCCCCCTGATATTAGCGCATTTGCTTATAGG
CCTATGAAAACTGTTGCTTCTGACCAAGGCAAAACCACAGTCGGACGTTTGAATGGGAGC
AGATTCAGAGAGACCGCACCGAAAGCAACTGGAGGGACTTCTAGGAGCCAGTTCAAATAG

Peptide Sequence

PEP ID

Zm00001d043287_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:3:194440836:194449517:-1 gene:Zm00001d043287 transcript:Zm00001d043287_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exonuclease 1
Sequence

MHRVNMLRHFGVRPILVFDGGLLPIKSYQEGKRARSRKENLERAREHEAAGNSRAAFECY
QKAVDITPRIASELIEVLKKENVNYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGC
SRIIFKMDKFGQGVEFQITRLEQNRELDFNGFTRQMLLEMCILSGCDYLPSLPGMGVKRA
HALIQKLKCHEKVIKHLRYGAVSVPPQYEEDFKKAIWAFKFQRVYDPATEDIIHLSSVPQ
SLIEDLEFLGPWLPQNIAKGIALGNIDPLTKEPFEINPECSAPSVHKVCPTREPIAPSNG
RKKLDLPVQKNILTNYFCLASLEAKRKFRAPKVTHKQQILNEALPSPQAQGSATSDSVED
TRLPTDRIQASQCSSEHLSSEPPQNDPISVGSQCSSERFSCEYPLDDSANISQCSSLDGG
SDPPYKDTGNKDRKVEAGYDNKNRIPTSPCIMGNLPWTSEPFLVPHNVGPSIPVQHYTES
TVASNNNGITVSSYFKTANKRICTDQGDQLDDDYDVSTGNLCGDQLRKSGMLKRRKLSGI
QKFEDETLQPIHSDDSPPFVDEGQDTDDPDDTNIRTEGRFGCNVSHVNTYSGIAEKSMDK
FAALISSFRYPGPRASGLRAPLKDVKNTLSVRSILKAPEKDTFRRTAKKTGLGPPSKSRY
TSDDKGSAASPPDISAFAYRPMKTVASDQGKTTVGRLNGSRFRETAPKATGGTSRSQFK

Transcript Sequence

Transcript ID

Zm00001d043287_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:194440836:194449517:-1 gene:Zm00001d043287 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exonuclease 1
Sequence

GAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGAGTGCGAGAGAGGCGAGGGGACGGTGGC
TGTTGACACCTATTCCTGGCTCCACAAGGGCGCTCTATCCTGCGGCGACCGCCTCTGCAA
GGGCATCCCCACCACCAGGCATATTGAATATTGCATGCATCGGGTTAACATGTTGCGGCA
TTTTGGTGTCAGACCAATTCTTGTATTTGATGGAGGCCTTCTGCCAATAAAGAGCTATCA
AGAGGGGAAGCGAGCAAGGTCAAGAAAGGAAAACCTTGAGCGTGCCAGGGAACATGAGGC
TGCTGGGAACTCACGTGCTGCTTTTGAGTGCTATCAGAAGGCTGTTGACATTACACCTAG
AATTGCTTCTGAACTGATTGAGGTACTGAAGAAAGAAAATGTTAATTATATTGTTGCACC
TTATGAAGCAGATGCGCAAATGACATTCTTATCTGTTAATAAACTTGTTGATGCTGTGAT
CACTGAGGATTCAGATTTGATACCATTTGGTTGTTCTAGAATTATTTTCAAAATGGACAA
ATTTGGGCAAGGTGTTGAATTTCAGATTACACGCCTAGAGCAAAACAGAGAGCTTGACTT
TAATGGATTCACAAGACAGATGTTACTTGAGATGTGTATTTTAAGTGGCTGTGACTATCT
CCCCTCATTGCCAGGAATGGGCGTTAAACGAGCTCATGCACTCATCCAAAAGCTGAAGTG
TCACGAAAAGGTGATCAAGCACCTGAGGTATGGTGCTGTTTCTGTTCCACCTCAATATGA
AGAGGACTTCAAGAAAGCAATCTGGGCATTTAAGTTCCAAAGGGTCTACGATCCTGCTAC
AGAAGATATTATTCATTTGTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTT
AGGCCCATGGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCACT
CACGAAGGAACCATTCGAGATCAATCCAGAGTGCAGTGCACCTTCTGTTCATAAGGTTTG
TCCAACCAGAGAGCCTATTGCACCTTCAAATGGGAGGAAGAAACTAGATTTGCCTGTGCA
GAAAAATATATTGACCAACTATTTCTGCTTAGCATCCCTTGAGGCAAAACGGAAATTCAG
GGCGCCTAAAGTAACACATAAGCAACAAATATTGAATGAAGCTTTGCCTAGCCCTCAAGC
TCAAGGCTCTGCTACCTCTGATTCAGTTGAAGATACTAGGTTGCCAACAGATCGCATTCA
AGCTTCTCAATGTAGTTCTGAGCATTTAAGCTCTGAACCTCCTCAAAATGACCCAATCAG
TGTTGGCTCTCAGTGTAGTTCTGAGCGTTTCAGCTGTGAGTACCCCCTCGATGATTCAGC
CAACATTTCACAATGTAGTTCACTTGATGGTGGTAGTGATCCTCCTTACAAGGATACTGG
CAATAAAGACAGAAAGGTTGAGGCTGGCTACGACAACAAAAATAGAATACCTACAAGTCC
TTGCATAATGGGAAATTTACCCTGGACATCAGAGCCATTTTTAGTTCCCCATAACGTGGG
ACCATCTATACCAGTTCAACATTATACTGAAAGCACTGTGGCCTCTAATAATAATGGCAT
TACCGTAAGTTCATACTTCAAAACAGCAAACAAGAGAATTTGCACAGATCAAGGAGACCA
GTTAGATGATGACTATGATGTTAGTACTGGTAATCTTTGTGGAGATCAACTGAGGAAATC
TGGCATGTTGAAGAGAAGAAAGCTTTCTGGCATCCAAAAGTTTGAAGATGAAACTTTACA
GCCGATTCATTCTGACGATAGTCCACCATTCGTTGATGAAGGTCAAGATACAGATGATCC
TGACGATACAAATATAAGAACTGAAGGAAGATTTGGATGCAATGTTTCCCATGTGAATAC
ATACAGTGGAATTGCAGAAAAATCAATGGATAAGTTTGCTGCATTGATATCATCTTTCAG
ATACCCCGGCCCCCGTGCCAGTGGCCTTCGTGCTCCTTTAAAGGATGTGAAAAACACACT
TTCTGTGAGATCTATTCTTAAAGCTCCAGAAAAAGACACATTCAGACGCACAGCAAAGAA
AACAGGTCTAGGCCCCCCTTCAAAAAGCAGATATACAAGTGATGATAAGGGAAGTGCTGC
CAGCCCCCCTGATATTAGCGCATTTGCTTATAGGCCTATGAAAACTGTTGCTTCTGACCA
AGGCAAAACCACAGTCGGACGTTTGAATGGGAGCAGATTCAGAGAGACCGCACCGAAAGC
AACTGGAGGGACTTCTAGGAGCCAGTTCAAATAGAACCAGTGCCGTTGGCTCTCTAAATG
CTGTGGTGAAAGGAAAACAACCCCTGATCAGAGCATTTCCGTTTCTGAGCATCGTTGAAG
ATAGTTGGCATTGGGCCCCCGGAGGACCTCGAGGGGCTGCAGAGGTTCCTTTGCTTCAGA
GCCCCTCTGTACCTATTCATCAACGTGGACCCTGGAGGACCGTTACTGCCTGCTAGTAGC
AGCTCGTTATTTTGAGCTCATCTTTTGTGCTGCTCGTCAGCTCGTGTTCAAACCAAGCCT
ACTGCTCATTTGCTTTCCCTGCAGCAGCAGCAGCCCCTACTGTTGCATCGAAGAAAGCAA
TCTCATTAGCGACTGCGTTGAACTGTAGTTAAGATACTTCTTGTCCATATCCTTGAGGCA
TGATTCGAACGGCGTCATTGTC