Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043239_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:3:192795188:192801081:1 gene:Zm00001d043239 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18f description:Autophagy-related protein 18f
Sequence

ATGCGGGACGGCGCGCCGGCTCCTCGCGCCGGCGGGGGCTTCTTCTCGGCGCGGTCGCTC
TCCAACTGCATGAGGATCGTGTCGTCGGGGGCGTCCACGGCCGCCTCCACGCTGCGCTCG
GCCGGGGCATCGCTGGTCAACTCGATGGCCAGCCACGAGGAGGATGCAAGTCGTGACCAG
GTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGGCAAGTTTTG
TTGCTGGCTTATAAATCTGGTTTCCAAGTGTGGGATGTGGAACATGCTGATGATGTAAGA
CAGCTAGAATCCAGACACGATGGTGCTGTTTCGTTTATTCAAGTGCTGAAGGATCCAATT
TTCACAACAGAATCTGGAGACAGATTTGCAGACACACGACCATTGCTAGCTCTTGCCTGT
GAAGGAACTCACACAGGAAGTGGAAAGAACCATGATACTAATGTTCCTGTTTTTGATGGA
ACCAATGGTGCTTTCCATAGTATAGGCGGTGAAAACCTTCCTACTGTCTTACTATTTTAT
TCACTGAGAACCCATGAATATGTGCATACATTGAGGTTCAGATCAGCTGTTTATTCCATA
AGGTGCAGTCCGAGAGTCGTAGCTATTTCACAGGCTACTCAGATACATTGTTTTGATGCC
GCGACCATGGAGAGAGAATATACTGTTCTTACCAGTCCTACGGTTGCACAAGTTTCAGGC
TATGGCCCACTTGGATTGGGTCCTAGATGGATTGCATATTCTGGGAATCCAGTTCCGGTT
CCAGATACTGGACGTGTTAGCCCACAGCTTCTTAGTCTATCTCCCTCTGTTCCACCTCCT
GGTTCAAATGGTAGTGTGGTGGCATATTATGCAAAAGAATCAAGCAAGCAACTGGCAGCT
GGCATTGCAACACTTGGTGAGGTTGGATATAATAAGCTGTCCAAGTACTATGCAGATTTC
ATTCCAAATGGTAATGGTACCATAAAGCAAAGAAGTTCTGTTTACAAAGCAAATGGTGTA
ACAAATGGCCACCTCATTGACAGTGAATATGCTGGAACGGTCATAGTTCGAGATATTGTC
TCTAAATTATTGATAGTTCAGTTCAGGGCACACACTAGTCCCATTTCTGCACTTTGCTTT
GATCCAAGTGGAACTTTGCTGGTGACAGCATCTGTTCATGGTCAAAACATGAATGTTTTC
CGCATTATACCTCCACATGGGACATCAGAAGCTGGTCAAATTGGAACCTATGTTCATCTG
TACAAACTGCAAAGAGGCATAACCAATGCGATCATAAAAGACATCAGCTTTAGTGATGAT
AGTGACTGGATAATGATTAGCTCTTCAAGAGGAACTAGCCATTTGTTTTCAATCTCTCCA
TATTGTGGATCAACAAGATTCCGTTACAGTGATAACAACCCTGTAGAAAATGATTACACA
GTGGATTCATCAGTTAATCATACTGCTCATTGGTCCCAAAATTCAGCAACCTCTTTGAGT
CTGAGTCAGAAGACTCTCTTCGTATCTGGACCCCCTGTCACATTGTCTGTTGTTAGTAGG
ATAAGAAATGGGAGTAACGTGTTTAAGGGTGCTGTCCATGGTGCTGCTGCATTTGCAACT
GGTGCTTCCACTCCAATTTCTGGTGCGATTGCTTCAACTTTTCACAACCGCATGGCTGGT
GACATCGATTCAGATGGCAGTTTGCGCATGAAGTATTATTTACTAGTATTTTCTCCATCA
GGAAGCATCATACAGTATGCTCTCCATCTCTCAGCTGAACAGGATTCTGGATTGGATTTC
CGGACAAGCCCCATTTCTTATGGGCCAGAGAGAGAAACTGATACAAAATTTGTTATTGAA
GCTCTTCAGAAGTGGGATGTTTGTTATAAAAGAAATAGAAGAGACAGTGCTGAGAGTTTT
GCATATAGTGATTTTGAGAATGGAGAAAATAATAAACTTTTGCTGAAAGCTATGTGGAAA
GGGACTAGTATCTACCCATTTGACTGTTCTGTTGAAAGGCAAAAGCTCAGTGCTGATGAA
AACCGTAATCTCTATATTTCTCAGAGTGAGTTGCAGACTCATGTTGTGCAAACTCCACTC
TGGTCTAAATCCAGGGTATTTTCTTGCACCATTTTCTGTTTCAATGCTGCATTTATATTT
TATGTTTGA

Peptide Sequence

PEP ID

Zm00001d043239_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:3:192795188:192801081:1 gene:Zm00001d043239 transcript:Zm00001d043239_T007 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18f description:Autophagy-related protein 18f
Sequence

MRDGAPAPRAGGGFFSARSLSNCMRIVSSGASTAASTLRSAGASLVNSMASHEEDASRDQ
VQWAGFDKLECGGGLLRQVLLLAYKSGFQVWDVEHADDVRQLESRHDGAVSFIQVLKDPI
FTTESGDRFADTRPLLALACEGTHTGSGKNHDTNVPVFDGTNGAFHSIGGENLPTVLLFY
SLRTHEYVHTLRFRSAVYSIRCSPRVVAISQATQIHCFDAATMEREYTVLTSPTVAQVSG
YGPLGLGPRWIAYSGNPVPVPDTGRVSPQLLSLSPSVPPPGSNGSVVAYYAKESSKQLAA
GIATLGEVGYNKLSKYYADFIPNGNGTIKQRSSVYKANGVTNGHLIDSEYAGTVIVRDIV
SKLLIVQFRAHTSPISALCFDPSGTLLVTASVHGQNMNVFRIIPPHGTSEAGQIGTYVHL
YKLQRGITNAIIKDISFSDDSDWIMISSSRGTSHLFSISPYCGSTRFRYSDNNPVENDYT
VDSSVNHTAHWSQNSATSLSLSQKTLFVSGPPVTLSVVSRIRNGSNVFKGAVHGAAAFAT
GASTPISGAIASTFHNRMAGDIDSDGSLRMKYYLLVFSPSGSIIQYALHLSAEQDSGLDF
RTSPISYGPERETDTKFVIEALQKWDVCYKRNRRDSAESFAYSDFENGENNKLLLKAMWK
GTSIYPFDCSVERQKLSADENRNLYISQSELQTHVVQTPLWSKSRVFSCTIFCFNAAFIF
YV

Transcript Sequence

Transcript ID

Zm00001d043239_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:192795188:192801081:1 gene:Zm00001d043239 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18f description:Autophagy-related protein 18f
Sequence

AGGCAAACCCTCGCTTTCTCCGATCGAATTGCTCGTCCCCGTGCAACCACCACCGGTTCG
GCCGCTCCCCACCACCAGTCCTCCCCGCCCCCGCCCGCCGGACGATCTACTAGGCCTCTC
GCCCCGCGCGTGCCGATTTCCCCCACCTCGAGCGCCGCCCTCCTCCCGCGCCCATGGCGA
GCACCTGAGGATACGGTCAGTGGGCTGTTTCTCTGCGAGAGTCCCACGAGTCCCCACAGA
AACAGCCCGGGGGCATCAGCGATCGATTCGGAACGCCTTGGTTCGGTCTGATTGCCGGAT
TGGTGGTTTCGTCTCGGCCTCGGCTTCCTCAACTATCTAGCTTGGAAGCCAAGTCTGGGC
TTGCTTCGTGTGGATTGCATCTGGGGAGGCGGTAGCGTGCACGGGTGTGATTCTCGGACC
GGCTTCATGCGGGACGGCGCGCCGGCTCCTCGCGCCGGCGGGGGCTTCTTCTCGGCGCGG
TCGCTCTCCAACTGCATGAGGATCGTGTCGTCGGGGGCGTCCACGGCCGCCTCCACGCTG
CGCTCGGCCGGGGCATCGCTGGTCAACTCGATGGCCAGCCACGAGGAGGATGCAAGTCGT
GACCAGGTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGGCAA
GTTTTGTTGCTGGCTTATAAATCTGGTTTCCAAGTGTGGGATGTGGAACATGCTGATGAT
GTAAGACAGCTAGAATCCAGACACGATGGTGCTGTTTCGTTTATTCAAGTGCTGAAGGAT
CCAATTTTCACAACAGAATCTGGAGACAGATTTGCAGACACACGACCATTGCTAGCTCTT
GCCTGTGAAGGAACTCACACAGGAAGTGGAAAGAACCATGATACTAATGTTCCTGTTTTT
GATGGAACCAATGGTGCTTTCCATAGTATAGGCGGTGAAAACCTTCCTACTGTCTTACTA
TTTTATTCACTGAGAACCCATGAATATGTGCATACATTGAGGTTCAGATCAGCTGTTTAT
TCCATAAGGTGCAGTCCGAGAGTCGTAGCTATTTCACAGGCTACTCAGATACATTGTTTT
GATGCCGCGACCATGGAGAGAGAATATACTGTTCTTACCAGTCCTACGGTTGCACAAGTT
TCAGGCTATGGCCCACTTGGATTGGGTCCTAGATGGATTGCATATTCTGGGAATCCAGTT
CCGGTTCCAGATACTGGACGTGTTAGCCCACAGCTTCTTAGTCTATCTCCCTCTGTTCCA
CCTCCTGGTTCAAATGGTAGTGTGGTGGCATATTATGCAAAAGAATCAAGCAAGCAACTG
GCAGCTGGCATTGCAACACTTGGTGAGGTTGGATATAATAAGCTGTCCAAGTACTATGCA
GATTTCATTCCAAATGGTAATGGTACCATAAAGCAAAGAAGTTCTGTTTACAAAGCAAAT
GGTGTAACAAATGGCCACCTCATTGACAGTGAATATGCTGGAACGGTCATAGTTCGAGAT
ATTGTCTCTAAATTATTGATAGTTCAGTTCAGGGCACACACTAGTCCCATTTCTGCACTT
TGCTTTGATCCAAGTGGAACTTTGCTGGTGACAGCATCTGTTCATGGTCAAAACATGAAT
GTTTTCCGCATTATACCTCCACATGGGACATCAGAAGCTGGTCAAATTGGAACCTATGTT
CATCTGTACAAACTGCAAAGAGGCATAACCAATGCGATCATAAAAGACATCAGCTTTAGT
GATGATAGTGACTGGATAATGATTAGCTCTTCAAGAGGAACTAGCCATTTGTTTTCAATC
TCTCCATATTGTGGATCAACAAGATTCCGTTACAGTGATAACAACCCTGTAGAAAATGAT
TACACAGTGGATTCATCAGTTAATCATACTGCTCATTGGTCCCAAAATTCAGCAACCTCT
TTGAGTCTGAGTCAGAAGACTCTCTTCGTATCTGGACCCCCTGTCACATTGTCTGTTGTT
AGTAGGATAAGAAATGGGAGTAACGTGTTTAAGGGTGCTGTCCATGGTGCTGCTGCATTT
GCAACTGGTGCTTCCACTCCAATTTCTGGTGCGATTGCTTCAACTTTTCACAACCGCATG
GCTGGTGACATCGATTCAGATGGCAGTTTGCGCATGAAGTATTATTTACTAGTATTTTCT
CCATCAGGAAGCATCATACAGTATGCTCTCCATCTCTCAGCTGAACAGGATTCTGGATTG
GATTTCCGGACAAGCCCCATTTCTTATGGGCCAGAGAGAGAAACTGATACAAAATTTGTT
ATTGAAGCTCTTCAGAAGTGGGATGTTTGTTATAAAAGAAATAGAAGAGACAGTGCTGAG
AGTTTTGCATATAGTGATTTTGAGAATGGAGAAAATAATAAACTTTTGCTGAAAGCTATG
TGGAAAGGGACTAGTATCTACCCATTTGACTGTTCTGTTGAAAGGCAAAAGCTCAGTGCT
GATGAAAACCGTAATCTCTATATTTCTCAGAGTGAGTTGCAGACTCATGTTGTGCAAACT
CCACTCTGGTCTAAATCCAGGGTATTTTCTTGCACCATTTTCTGTTTCAATGCTGCATTT
ATATTTTATGTTTGATTGACATGCTGGGACTCATAAAGTGCAATGCCTGCTTATTGACTG
ATGCCAGATACACTTTCAAGTTATGGAGGGTGAAACTTTAGAAGCAGACAATGCTGATGT
AATTTCAGGGGAAGTTGAAGTAGAAAAAGTCCAGACCCACAACATAGAATCAAGGTCAAA
GAATCTCATACCAGTCTTCGACTCCCTCCATACATCAAGGTTTCAACAGACAAGGTTGAA
CGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATCTGGGATTTCAGAAGA
TGGTAGACTCTCTCGCAGAAGCAGCTGTAGTTCTTTGGACTGCATGTCTGAAGGGCCCAA
AAGCTCTGATGACGGTGCTTTCAGTAAATATGTAGTAGATGATAACAGTTCTGCTGTAAT
TAACAACCCAAGTGTTAAATTTCATGCCGAGCTTGTAAATAATACTGGGAGCCTCAAGTC
AGAGGCCCAGCTCGGATTTGTAAATAGCGAGGAGGATGGTGGAGGTGGAGAGCAACTCCC
AGACTTGTGATGTTGACTATGTCAAGATGGTCGATGGTGATGGAGGAGCCTCTTTAATCG
CTGAAGTCTTCATTGTGCGTGTGTAGCTGAATTCTTTCATTTCTCCATCCTGAGTTCTTT
ACCTCTCTTCTATCTATAGTTCTATTCATAGGCATTCATGAAAATTTTACCGAGAGAAAA
GATAGGAAGGGAGGTTTAATTCTGGCCCTATGGGTGTGGAAGCTTTGGTGATGTTAGTTC
GATATCTTACAAGTTGTAAATAACATGCAATAATAGCACGTAATTTGTGAATATTTAAAT
CATAATGTGTCCAACTGAGGTACGAG