Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043226_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:192430715:192432750:1 gene:Zm00001d043226 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyphenol oxidase chloroplastic
Sequence

ATGGCATCCATGTCGCATTTAATTGCTAAGCCAGCTCCAGCTGCCACCTTTCCTCTATCC
CTTCCGAGAACGAGCTCCGGCTTCAGGCCTCGCCGCGTTACCGTCCAGCGCGTATCGTGC
GCATCTCCCAGAGGCGAACGCTACGAGCTAGACGCCCGAAAGCACGACCGCCGCGACGTC
CTCCTCGGCCTCGGAGCGCTCGGTGCCAGTGCCACCGCTACCCTGGCGTCCGCGCGCCGC
GCCGGCGCCGACCCCGTCGCCACGCCCGACATCTCTTCCTGCGGCCAAGCGAACCTTCCG
GTGAGCGCCAACGTGCTGACGTGCTGCCCGCCGCCCTCGAGCGCGCTGCCCGTGGACTTC
ATCCTCCCCGACGCCACGTCCTTGCCGCTCCGGACGCGCCCCGCCGCGCACTCGGTCACC
ACGGACTACGTCGCCAAGTTCAACGCCGGGATCGCTGCGATGAAGGCGCTCCCGGCGGAC
GACCCGCGCAGCTTCGCGGCGCAGGCGAGCGTGCACTGCGCCTACTGCGACGGGTCGTAC
AGCCCCGAGGGGTTCCCCGGTGTGGAGCTCCAGGTGCACAACTCGTGGCTCTTTTTCCCC
TTCCACCGCTGCTACCTATACTTCTTCGAGCGCATCCTGGGCAGCCTGATCGGCGACCCC
GGCTTCGCCGTACCGTTCTGGAACTGGGACGCGCCGGACGGGATGCGCATGCCGGCCATG
TACGCGGACCGGTCATCCCAGCTGTTCGATCCGCGGCGTGACAGCCGGCACGCGCCGCCG
AAGCTCATCAATCTCGACTACAACGCCAACGTTAGGGAGCCGAGGTTCACTTACAAACAA
CAGGTTGATCACAACCTCAGGGTCATGTACCGTCAGATGGTATCGCTGAGCCCGACGCCG
TCGCTCTTCTTCGGCAGCGCGTACCGCGCCGGCGACGACCCGAACCAAGGGCCAGGGCCG
GTGGAGAGCATCCCGCATGGCCCGGTGCACATCTGGTGCGGCGACCCGAACCAGCCGGAC
GGCGAGGACATGGGCAACTTCTACTCGGCCGGGTTCGACCCGCTCTTCTACGCGCACCAC
GCCAACATCGACCGCATGTGGTCCGTCTGGAAGGGGCTCGACGTCCGGCGCCACACGGAC
CTCACCGACCCGGACTGGCTAGACGCCTCCTTCCTCTTGTACGACGAGACCCCCAAGCTG
GTGCGCATCCGCGTGCGCGACGTGCTCGACACCGACAGGCTGCGGTACCGGTACCAGGAC
GTACCCCTGCACTGGACGGCCGCCAGGCCAACCGTGACCGCCGGGACGCGGAGAGCGGAC
TCGTTCCTCGCGCCCGCGGCGCAGGCCGCTCCCGCCGCCGCTAGGAAGGCGGGCGAGTTC
CCCATCACGCTGGACGAGGCGACGATCGTGACGGTGAAGAGGCCGGTCGCGGGGAAGAGG
AGCAAGGCGGAGAAGGACTCCAAGGAGGAGGTTCTCGTCATCGACGGCATCGAGGTGGAC
AGGGACGTGGCCGCCAAGTTCGACGTGTTCGTGAACACCGAGGACCACGGCGCGGTGGGA
TCGGGCGGGCGGGAGCTCGCGGGGAGCTTCGTGAACGTGCCGCACCGGCACGGGCACGGG
CACGGGCACGCCAAGAAGGGGAGAGGGATCAAGACCAAGCTGCGGCTCGCGTTGAACGAG
CAGCTCGAGGACCTCGAGGCCGAAGGCGACGAGAGCGTGGTGGTGACCCTCGTGCCGCGG
CAAGGCAAGGGTAGGGTGAAGATCGGAGGCGTCAAGATTGAGCTGATGCATTGA

Peptide Sequence

PEP ID

Zm00001d043226_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:192430715:192432750:1 gene:Zm00001d043226 transcript:Zm00001d043226_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyphenol oxidase chloroplastic
Sequence

MASMSHLIAKPAPAATFPLSLPRTSSGFRPRRVTVQRVSCASPRGERYELDARKHDRRDV
LLGLGALGASATATLASARRAGADPVATPDISSCGQANLPVSANVLTCCPPPSSALPVDF
ILPDATSLPLRTRPAAHSVTTDYVAKFNAGIAAMKALPADDPRSFAAQASVHCAYCDGSY
SPEGFPGVELQVHNSWLFFPFHRCYLYFFERILGSLIGDPGFAVPFWNWDAPDGMRMPAM
YADRSSQLFDPRRDSRHAPPKLINLDYNANVREPRFTYKQQVDHNLRVMYRQMVSLSPTP
SLFFGSAYRAGDDPNQGPGPVESIPHGPVHIWCGDPNQPDGEDMGNFYSAGFDPLFYAHH
ANIDRMWSVWKGLDVRRHTDLTDPDWLDASFLLYDETPKLVRIRVRDVLDTDRLRYRYQD
VPLHWTAARPTVTAGTRRADSFLAPAAQAAPAAARKAGEFPITLDEATIVTVKRPVAGKR
SKAEKDSKEEVLVIDGIEVDRDVAAKFDVFVNTEDHGAVGSGGRELAGSFVNVPHRHGHG
HGHAKKGRGIKTKLRLALNEQLEDLEAEGDESVVVTLVPRQGKGRVKIGGVKIELMH

Transcript Sequence

Transcript ID

Zm00001d043226_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:192430715:192432750:1 gene:Zm00001d043226 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyphenol oxidase chloroplastic
Sequence

AACCCATTGCGCTCTGCAAGTTTAACCGGACATGGCATCCATGTCGCATTTAATTGCTAA
GCCAGCTCCAGCTGCCACCTTTCCTCTATCCCTTCCGAGAACGAGCTCCGGCTTCAGGCC
TCGCCGCGTTACCGTCCAGCGCGTATCGTGCGCATCTCCCAGAGGCGAACGCTACGAGCT
AGACGCCCGAAAGCACGACCGCCGCGACGTCCTCCTCGGCCTCGGAGCGCTCGGTGCCAG
TGCCACCGCTACCCTGGCGTCCGCGCGCCGCGCCGGCGCCGACCCCGTCGCCACGCCCGA
CATCTCTTCCTGCGGCCAAGCGAACCTTCCGGTGAGCGCCAACGTGCTGACGTGCTGCCC
GCCGCCCTCGAGCGCGCTGCCCGTGGACTTCATCCTCCCCGACGCCACGTCCTTGCCGCT
CCGGACGCGCCCCGCCGCGCACTCGGTCACCACGGACTACGTCGCCAAGTTCAACGCCGG
GATCGCTGCGATGAAGGCGCTCCCGGCGGACGACCCGCGCAGCTTCGCGGCGCAGGCGAG
CGTGCACTGCGCCTACTGCGACGGGTCGTACAGCCCCGAGGGGTTCCCCGGTGTGGAGCT
CCAGGTGCACAACTCGTGGCTCTTTTTCCCCTTCCACCGCTGCTACCTATACTTCTTCGA
GCGCATCCTGGGCAGCCTGATCGGCGACCCCGGCTTCGCCGTACCGTTCTGGAACTGGGA
CGCGCCGGACGGGATGCGCATGCCGGCCATGTACGCGGACCGGTCATCCCAGCTGTTCGA
TCCGCGGCGTGACAGCCGGCACGCGCCGCCGAAGCTCATCAATCTCGACTACAACGCCAA
CGTTAGGGAGCCGAGGTTCACTTACAAACAACAGGTTGATCACAACCTCAGGGTCATGTA
CCGTCAGATGGTATCGCTGAGCCCGACGCCGTCGCTCTTCTTCGGCAGCGCGTACCGCGC
CGGCGACGACCCGAACCAAGGGCCAGGGCCGGTGGAGAGCATCCCGCATGGCCCGGTGCA
CATCTGGTGCGGCGACCCGAACCAGCCGGACGGCGAGGACATGGGCAACTTCTACTCGGC
CGGGTTCGACCCGCTCTTCTACGCGCACCACGCCAACATCGACCGCATGTGGTCCGTCTG
GAAGGGGCTCGACGTCCGGCGCCACACGGACCTCACCGACCCGGACTGGCTAGACGCCTC
CTTCCTCTTGTACGACGAGACCCCCAAGCTGGTGCGCATCCGCGTGCGCGACGTGCTCGA
CACCGACAGGCTGCGGTACCGGTACCAGGACGTACCCCTGCACTGGACGGCCGCCAGGCC
AACCGTGACCGCCGGGACGCGGAGAGCGGACTCGTTCCTCGCGCCCGCGGCGCAGGCCGC
TCCCGCCGCCGCTAGGAAGGCGGGCGAGTTCCCCATCACGCTGGACGAGGCGACGATCGT
GACGGTGAAGAGGCCGGTCGCGGGGAAGAGGAGCAAGGCGGAGAAGGACTCCAAGGAGGA
GGTTCTCGTCATCGACGGCATCGAGGTGGACAGGGACGTGGCCGCCAAGTTCGACGTGTT
CGTGAACACCGAGGACCACGGCGCGGTGGGATCGGGCGGGCGGGAGCTCGCGGGGAGCTT
CGTGAACGTGCCGCACCGGCACGGGCACGGGCACGGGCACGCCAAGAAGGGGAGAGGGAT
CAAGACCAAGCTGCGGCTCGCGTTGAACGAGCAGCTCGAGGACCTCGAGGCCGAAGGCGA
CGAGAGCGTGGTGGTGACCCTCGTGCCGCGGCAAGGCAAGGGTAGGGTGAAGATCGGAGG
CGTCAAGATTGAGCTGATGCATTGAAGAATTCGTTGACCATGCAAAAATAAAGCAGTTTA
TTTCCGCGAGAGATCGCAATAAATGGATTGGCAGCAGACGTTGCTTGT