Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d043201_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:191430494:191436524:-1 gene:Zm00001d043201 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:high chlorophyll fluorescence148 description: ycf3 intracting protein homolog1
Sequence	ATGAGCCCGATGGCGCTGCTCACACCACTGCCCATTCCCCTTCTCTCGCCGTATTGCCAA CGCGTCTCGTCTCCGTCGCTTCTGGCGGCCGGGGCAGTTATCAGACCTCTCATTTGTCTT TCCCCCCACAATCACCGCCACCACGATGCACTCTACCCCTCTGTCCCCAATGTGTGGCCA CGCCACCGGCGCCGCCGCAGGGGCGCAGTTGCTTCCGTCGACCAGGAGGAGTCTAGTGCC TCGGAAACCGCAGTCGCTCCCGAGGAAGACCTGGGGCCACCGGTATCCTCTGATGCGGCT GCCGAGGACGGGGTCGCGACTTCTGCCCAGCCGGCGGAGGCGAGCCCGGAGGACCTGGAG AACATCCGCGAAATTAAAAGGGTACTGGAGCTGCTGAAGAAGAACAGAGACATGACCTTT GGCGAGGTTAAGCTTACCATCATGATTGAGGACCCTAGAGATATAGAAAGAAAGAGAACA CTCGGGATAGAGGATCCTGATGAAATTACTAGGGATGATTTAGCTGACGCTTTGGCTGAG GTTAACGAAGGAAAGATTCCAGAGAATCGTGTTGCACTTCAGTTGCTTGCCAAGGAGATG GCAGAATGGCCAGACATTGAGATAGAAGCTCCAAAAAAGAAGAGCAAACCTGGGAAATCT GTCTATGCAAAAGCCACAGATACTGGCATCGATCCTGAGACAGCTGCTAAAAGACTTAAC CTTGACTGGGACTCTGCTGCTGATATAGATGGCGAAGAGGAGGACGATGATGAAACTGAA GTGCCGTCTGCAGTGGGATATGGTGCCTTGTATTTGTTGACAGCTTTTCCGGAAACAGCT GATCACAGTTGTGTAGACAGAATCGCAGGCTCGCTGGCCCAACCGCCCATGGCTCCAAGC TTTCGGATACGATCAAGTGAGAAGTCAACCGAACAGCTCACCGACACAGCATGGCCTGGA GACAATGTAGAGAGCTCCGGCAAGCTCACTTTTCCTTGTGCCATGAGCCAAGAAGATGCC TCTTCCTTCAAGAGAGAAGCTGAAGCTCGAGTAGCAGACGATGAAGAGGAGGGCCGGCGA TTCCGCTCCGGTTCGTCGGTCACCGACCTCTCGAGCAACGCGTCGTCGATTAACTACCGC AAGGCGCGGCAGGGCAAGATCGGCGGGGACGGCTTCTGGTGCGGCGTCCTGTGCATGTAC CTGCCGGGCCTGTCCAGGAGGCGGTCGATGCAGCAGCAGCAGTCCATGAGCCTGAGCGAG GCGAACACGGCCGGGCCTGCCGGGGACCGTTCGAGCACGGTGTCGAAGGTGGCCTCCATG GAGAGGTTCAAGTACAGCTCGTCGTCCTCGGGCGCCGCGTTCGAGCGCACGGGCGCGAGC GAGGAAGAAGAGGAGGTGTCGGCGTACTTCGACCTGCCGCTGGAGCTTCTGAGGATCAGC AGCGTTGACACGGAGTCGCCGGTCACGGCGGCGTTCGTCTTCGACGGCAACCGCGGCCGG AGCGCCAAGAAGATCGTGCCTGAGATCCCGGACCTCGATTTTAGCTTCCCCGCGCCGCCG GTTTTCTCGAATCCTTCGTCGCCAAGGTCTTGA

Peptide Sequence

PEP ID	Zm00001d043201_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:191430494:191436524:-1 gene:Zm00001d043201 transcript:Zm00001d043201_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:high chlorophyll fluorescence148 description: ycf3 intracting protein homolog1
Sequence	MSPMALLTPLPIPLLSPYCQRVSSPSLLAAGAVIRPLICLSPHNHRHHDALYPSVPNVWP RHRRRRRGAVASVDQEESSASETAVAPEEDLGPPVSSDAAAEDGVATSAQPAEASPEDLE NIREIKRVLELLKKNRDMTFGEVKLTIMIEDPRDIERKRTLGIEDPDEITRDDLADALAE VNEGKIPENRVALQLLAKEMAEWPDIEIEAPKKKSKPGKSVYAKATDTGIDPETAAKRLN LDWDSAADIDGEEEDDDETEVPSAVGYGALYLLTAFPETADHSCVDRIAGSLAQPPMAPS FRIRSSEKSTEQLTDTAWPGDNVESSGKLTFPCAMSQEDASSFKREAEARVADDEEEGRR FRSGSSVTDLSSNASSINYRKARQGKIGGDGFWCGVLCMYLPGLSRRRSMQQQQSMSLSE ANTAGPAGDRSSTVSKVASMERFKYSSSSSGAAFERTGASEEEEEVSAYFDLPLELLRIS SVDTESPVTAAFVFDGNRGRSAKKIVPEIPDLDFSFPAPPVFSNPSSPRS

Transcript Sequence

Transcript ID	Zm00001d043201_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:191430494:191436524:-1 gene:Zm00001d043201 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:high chlorophyll fluorescence148 description: ycf3 intracting protein homolog1
Sequence	GTCGCTAGGGACCCCAGGTGAAACCATCAGCTCATTCTCGCCTCTCAAAGTCTCAATCGT GCAATCCGGCCGCTGGCCGCATGCCGCGACCCGAAGTGATAAGCCACCGCCCACCGCCGC TGGCATGAGCCCGATGGCGCTGCTCACACCACTGCCCATTCCCCTTCTCTCGCCGTATTG CCAACGCGTCTCGTCTCCGTCGCTTCTGGCGGCCGGGGCAGTTATCAGACCTCTCATTTG TCTTTCCCCCCACAATCACCGCCACCACGATGCACTCTACCCCTCTGTCCCCAATGTGTG GCCACGCCACCGGCGCCGCCGCAGGGGCGCAGTTGCTTCCGTCGACCAGGAGGAGTCTAG TGCCTCGGAAACCGCAGTCGCTCCCGAGGAAGACCTGGGGCCACCGGTATCCTCTGATGC GGCTGCCGAGGACGGGGTCGCGACTTCTGCCCAGCCGGCGGAGGCGAGCCCGGAGGACCT GGAGAACATCCGCGAAATTAAAAGGGTACTGGAGCTGCTGAAGAAGAACAGAGACATGAC CTTTGGCGAGGTTAAGCTTACCATCATGATTGAGGACCCTAGAGATATAGAAAGAAAGAG AACACTCGGGATAGAGGATCCTGATGAAATTACTAGGGATGATTTAGCTGACGCTTTGGC TGAGGTTAACGAAGGAAAGATTCCAGAGAATCGTGTTGCACTTCAGTTGCTTGCCAAGGA GATGGCAGAATGGCCAGACATTGAGATAGAAGCTCCAAAAAAGAAGAGCAAACCTGGGAA ATCTGTCTATGCAAAAGCCACAGATACTGGCATCGATCCTGAGACAGCTGCTAAAAGACT TAACCTTGACTGGGACTCTGCTGCTGATATAGATGGCGAAGAGGAGGACGATGATGAAAC TGAAGTGCCGTCTGCAGTGGGATATGGTGCCTTGTATTTGTTGACAGCTTTTCCGGAAAC AGCTGATCACAGTTGTGTAGACAGAATCGCAGGCTCGCTGGCCCAACCGCCCATGGCTCC AAGCTTTCGGATACGATCAAGTGAGAAGTCAACCGAACAGCTCACCGACACAGCATGGCC TGGAGACAATGTAGAGAGCTCCGGCAAGCTCACTTTTCCTTGTGCCATGAGCCAAGAAGA TGCCTCTTCCTTCAAGAGAGAAGCTGAAGCTCGAGTAGCAGACGATGAAGAGGAGGGCCG GCGATTCCGCTCCGGTTCGTCGGTCACCGACCTCTCGAGCAACGCGTCGTCGATTAACTA CCGCAAGGCGCGGCAGGGCAAGATCGGCGGGGACGGCTTCTGGTGCGGCGTCCTGTGCAT GTACCTGCCGGGCCTGTCCAGGAGGCGGTCGATGCAGCAGCAGCAGTCCATGAGCCTGAG CGAGGCGAACACGGCCGGGCCTGCCGGGGACCGTTCGAGCACGGTGTCGAAGGTGGCCTC CATGGAGAGGTTCAAGTACAGCTCGTCGTCCTCGGGCGCCGCGTTCGAGCGCACGGGCGC GAGCGAGGAAGAAGAGGAGGTGTCGGCGTACTTCGACCTGCCGCTGGAGCTTCTGAGGAT CAGCAGCGTTGACACGGAGTCGCCGGTCACGGCGGCGTTCGTCTTCGACGGCAACCGCGG CCGGAGCGCCAAGAAGATCGTGCCTGAGATCCCGGACCTCGATTTTAGCTTCCCCGCGCC GCCGGTTTTCTCGAATCCTTCGTCGCCAAGGTCTTGAAAGTTGAAACTATCAGAGAGGAG GTGCTCAATATCCTGCAACGCGTTGCGCTTTCGGTGTTCCACTTTTTTCTTGCTGCTGAT GTCTGGTGTCTGGTGTCTGGGGCACGTAGGTTAAGGTCGTAAAATTGTCTGCTGATTAGG TCAAATTATGCGATTCTATATTCGATCAAGCTAGCACGCTGTGCATTGCACAACTGCCAT GGATCCAGACAGGCCCTAAGTGAGGGCATAGTGTGGTTCATGACTTCCCGGCTCGAGTTA GTCGTTGGCATCCAATCTATAGAGTGCATTACATTTAGCCTGGATTTGGATCATTGACTC ATTTGGGTGTGCATGCTGCTTTCAGCAACTTGCGGATTTCACCTGTCA