Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043179_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:190701685:190704770:1 gene:Zm00001d043179 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN-formed protein9 description: PIN-formed protein9
Sequence

ATGATCCCAGGATCCGCCGTGTACCACGTGGTGGAGGCGATGGCGCCGCTGTACACGTCG
GCGGTGCTGGGCTACGCGTCCGTGCGGTGGCTCAAAGCCTTCTCCGACGAGCAGTGCGCG
GGGATCAACCACTTCGTGGCGCTGTACGCCGTGCCGGTGCTCATCTTCCACATGGTGTCC
ACCAACGACCCGTACCACATGAACGAGCGCCTCATCGCCGCCGACACGCTGCAGAAGGCC
GTCGTGCTGCTGGCGCTCACGGCCTGGGCGTTCTGGTCCCACCTCAGCAGGCGCCGCGGA
GGCCGAGGGAAGCGGCAGGTGGTTCAGGGAGCGGAGTCGCCGATCAAGTGGGTGGTGACC
AACTTCTCGGTGGCGTCGCTGCCCAACACCATCATCATGGGCGTGCCGCTCCTGGACGGC
ATGTACGGGCCCGTGTCGGGCGGGCTCATGAAGCAGATCGTCGTCATGCAGTTCTGCATC
TGGTACAACGTCGTCATCTTCCTCTACGAGTTCATGGCGGCGCGGGACGGCAGCGCCAGG
ATCAGCCCAGCCGTGCCGGCGACGGCGGGCGAGCGCGTCGTCGACGACGAAAACGGCGGA
AGCAGTAGTGTCCATCGTCATGCCGCCGCCGACCGTAGCCACCACCACCACCAGGTGGTC
GTCAACATTGAGATCACGGAGGTGGCGCCGGCGCCGGCGGCGGAGGCGGTCGTTGCGTCG
TCGTTGATGCCCGCGGCGGCCACGAAGGAGATGAGCCCAGAGGACGATGGAGATGCTAAC
AAGCAGGTGGTGGTGGCCGTGGATGTCCAGCCGCCGGTGATGCACGTCGTCTGGATGGCC
ACGAAGAAGCTTCTCCAGATTCCGAACACCTATGCCAGTTTCCTTGGCCTCATCTGGTCT
CTCATGGCATTCAAGATTGGATTCTCGATGCCGAAGATTGTTAGCGACTCTCTGTTCATC
ATCTACACAACCGCAGTTGGGCTGAGCATGTTCGCTTCAGGGACGTTCATAGCGCGGCAG
TCACGGTTCGTGCCGTGCGGGTACACCGTCGCCTCGCTCTCCATGCTCCTCAAGTTCCTG
ATAGGCCCGGTCATCATGCTGATCGCCTCGCTGGCCATTGGAATGCACGGCACCCTTCTG
CACATTGCTGTTGTACAGGCAAGCCGACCAACAGCCCCCAATAATGCGGCTCTCCCCCTG
GCCGTGACCTCATTCGTGTACGCGGAGGAGTACAAGGTCCACGCCGACATCATGAGCACT
GGGTCTGTACCTTTCAAGGTTATTCTCGGGATATTTATCTCGCTGCCCGTCACGATTGTC
TACTACATACTGTTGGGCCTTTGA

Peptide Sequence

PEP ID

Zm00001d043179_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:190701685:190704770:1 gene:Zm00001d043179 transcript:Zm00001d043179_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN-formed protein9 description: PIN-formed protein9
Sequence

MIPGSAVYHVVEAMAPLYTSAVLGYASVRWLKAFSDEQCAGINHFVALYAVPVLIFHMVS
TNDPYHMNERLIAADTLQKAVVLLALTAWAFWSHLSRRRGGRGKRQVVQGAESPIKWVVT
NFSVASLPNTIIMGVPLLDGMYGPVSGGLMKQIVVMQFCIWYNVVIFLYEFMAARDGSAR
ISPAVPATAGERVVDDENGGSSSVHRHAAADRSHHHHQVVVNIEITEVAPAPAAEAVVAS
SLMPAAATKEMSPEDDGDANKQVVVAVDVQPPVMHVVWMATKKLLQIPNTYASFLGLIWS
LMAFKIGFSMPKIVSDSLFIIYTTAVGLSMFASGTFIARQSRFVPCGYTVASLSMLLKFL
IGPVIMLIASLAIGMHGTLLHIAVVQASRPTAPNNAALPLAVTSFVYAEEYKVHADIMST
GSVPFKVILGIFISLPVTIVYYILLGL

Transcript Sequence

Transcript ID

Zm00001d043179_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:190701685:190704770:1 gene:Zm00001d043179 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN-formed protein9 description: PIN-formed protein9
Sequence

GCACACTTTGCATCAATCTGTCACACACGACCGAGAGAGAGAGCAAGCACTAGCTAGCGC
TTCGTTCTGGCTAGCTAGCCTCCTCTAGGGACGAGGAGGGTTTAGCGAGGGTTCATTGTT
GTTTCACGTACACAGTCGTTGCTAGATTGCTTGTTTGCAGCTATAGCTGGTTCGAAGCTA
CAAGGGCCGCGCGCCGCCGAGAAAAAAAAGAACCGACGGCACCATGATCCCAGGATCCGC
CGTGTACCACGTGGTGGAGGCGATGGCGCCGCTGTACACGTCGGCGGTGCTGGGCTACGC
GTCCGTGCGGTGGCTCAAAGCCTTCTCCGACGAGCAGTGCGCGGGGATCAACCACTTCGT
GGCGCTGTACGCCGTGCCGGTGCTCATCTTCCACATGGTGTCCACCAACGACCCGTACCA
CATGAACGAGCGCCTCATCGCCGCCGACACGCTGCAGAAGGCCGTCGTGCTGCTGGCGCT
CACGGCCTGGGCGTTCTGGTCCCACCTCAGCAGGCGCCGCGGAGGCCGAGGGAAGCGGCA
GGTGGTTCAGGGAGCGGAGTCGCCGATCAAGTGGGTGGTGACCAACTTCTCGGTGGCGTC
GCTGCCCAACACCATCATCATGGGCGTGCCGCTCCTGGACGGCATGTACGGGCCCGTGTC
GGGCGGGCTCATGAAGCAGATCGTCGTCATGCAGTTCTGCATCTGGTACAACGTCGTCAT
CTTCCTCTACGAGTTCATGGCGGCGCGGGACGGCAGCGCCAGGATCAGCCCAGCCGTGCC
GGCGACGGCGGGCGAGCGCGTCGTCGACGACGAAAACGGCGGAAGCAGTAGTGTCCATCG
TCATGCCGCCGCCGACCGTAGCCACCACCACCACCAGGTGGTCGTCAACATTGAGATCAC
GGAGGTGGCGCCGGCGCCGGCGGCGGAGGCGGTCGTTGCGTCGTCGTTGATGCCCGCGGC
GGCCACGAAGGAGATGAGCCCAGAGGACGATGGAGATGCTAACAAGCAGGTGGTGGTGGC
CGTGGATGTCCAGCCGCCGGTGATGCACGTCGTCTGGATGGCCACGAAGAAGCTTCTCCA
GATTCCGAACACCTATGCCAGTTTCCTTGGCCTCATCTGGTCTCTCATGGCATTCAAGAT
TGGATTCTCGATGCCGAAGATTGTTAGCGACTCTCTGTTCATCATCTACACAACCGCAGT
TGGGCTGAGCATGTTCGCTTCAGGGACGTTCATAGCGCGGCAGTCACGGTTCGTGCCGTG
CGGGTACACCGTCGCCTCGCTCTCCATGCTCCTCAAGTTCCTGATAGGCCCGGTCATCAT
GCTGATCGCCTCGCTGGCCATTGGAATGCACGGCACCCTTCTGCACATTGCTGTTGTACA
GGCAAGCCGACCAACAGCCCCCAATAATGCGGCTCTCCCCCTGGCCGTGACCTCATTCGT
GTACGCGGAGGAGTACAAGGTCCACGCCGACATCATGAGCACTGGGTCTGTACCTTTCAA
GGTTATTCTCGGGATATTTATCTCGCTGCCCGTCACGATTGTCTACTACATACTGTTGGG
CCTTTGAAATTCTCATGCTGATTAGGAGAAGGTGCATGCCCCGGCCCGTCGTCATGTGCA
AAATCTGAAGCGGCCACGTGAATTGGTGCCTACACAGCTCAGATCGATACGCACGTACGC
AACCATGCAAGGAAGAATTAAATGTTGCTGATGCTACCAAAAATTGTTTCAATAAGATTA
CAATGTGCTAGCAGTAGAAAGTAGTCAATACCTTATATACAATCCAAAACATCTCAATGT
ATATAGCAGGCATGTAATTAATATGTAGAAGCAAACCGTGCTGCACAGCTTTAAGTTTAT
GTTCAAATATTCCATTGTACAACAAGAGATACAAAATAAGAAAATCGAAGGAATGTATCA
TTATTGAC