Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043158_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:190365184:190368453:-1 gene:Zm00001d043158 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:beta tubulin6b description: beta tubulin6b
Sequence

ATGCTCGCAGCTGCCACCGCCGCCTACGGCTATTTTAACCCCGCGCTCCTGCCGACGCCG
CACTCGCCCCCGGCCTCCTCCCGCCTCCCAGATCTCGCTCGCTCGGCGCCAGTTGCCTCG
CAGTTTGGATCATCTCATACCTCGGCGAAGATGAGGGAGATCCTGCACATCCAGGGAGGG
CAATGTGGCAACCAGATTGGCGCCAAGTTCTGGGAGGTGGTGTGCGATGAACATGGCATT
GACCCTACCGGGCGGTACACTGGCAATTCCGACCTTCAGTTGGAGCGTGTTAATGTCTAC
TACAATGAAGCCTCCTGCGGACGCTTTGTTCCCCGCGCTGTTCTCATGGATCTTGAGCCT
GGGACAATGGACAGTGTCCGGACCGGACCCTATGGGCAGATCTTCCGCCCTGACAACTTT
GTGTTTGGGCAATCTGGTGCTGGTAACAATTGGGCTAAGGGCCACTACACCGAGGGTGCT
GAGCTCATTGACTCTGTTCTGGATGTTGTGAGGAAGGAAGCTGAGAACTGTGACTGCTTG
CAAGGATTCCAAGTATGCCACTCCCTTGGTGGTGGTACTGGATCTGGTATGGGTACGCTG
TTGATCTCAAAGATCAGGGAAGAGTACCCTGACCGCATGATGCTTACATTCTCAGTTTTC
CCCTCACCGAAAGTATCTGATACCGTGGTTGAGCCATACAATGCCACTCTTTCTGTCCAC
CAGTTGGTCGAGAATGCTGATGAGTGCATGGTTCTCGATAACGAAGCCCTCTATGACATC
TGCTTCAGGACTCTTAAGCTGACCACCCCTAGCTTTGGTGATCTGAACCATTTGATCTCT
GCAACCATGAGTGGAGTCACCTGCTGCCTAAGGTTCCCTGGTCAGCTGAACTCCGACCTC
AGGAAGCTGGCAGTGAACCTGATCCCCTTCCCCCGTCTCCACTTCTTCATGGTCGGCTTC
GCGCCGCTGACGTCCCGTGGCTCCCAGCAGTACCGGGCCCTCACAGTCCCCGAGCTCACG
CAGCAGATGTGGGATGCCAAGAACATGATGTGTGCCGCTGACCCTCGCCATGGGCGTTAC
CTCACCGCCTCGGCCATGTTCCGCGGGAAGATGAGCACCAAGGAGGTTGACGAGCAGATG
ATCAACGTCCAGAACAAGAACTCGTCCTACTTCGTGGAGTGGATCCCCAACAACGTCAAG
TCCAGCGTGTGCGACATCCCGCCCAGGGGCCTGTCCATGGCGTCCACCTTCATCGGCAAC
TCGACCTCCATCCAGGAGATGTTCCGGAGGGTGAGCGAGCAGTTCACTGCCATGTTCAGG
AGGAAGGCTTTCTTGCACTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCGAG
GCCGAGAGCAACATGAACGACCTCGTGTCGGAGTACCAGCAGTACCAGGACGCGACTGCC
GACGAGGAGGAGTACGAGGACGAGGAGGAGGTGCAGGCCGATGACATGTGA

Peptide Sequence

PEP ID

Zm00001d043158_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:190365184:190368453:-1 gene:Zm00001d043158 transcript:Zm00001d043158_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:beta tubulin6b description: beta tubulin6b
Sequence

MLAAATAAYGYFNPALLPTPHSPPASSRLPDLARSAPVASQFGSSHTSAKMREILHIQGG
QCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEP
GTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL
QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH
QLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDL
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRY
LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGN
STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
DEEEYEDEEEVQADDM

Transcript Sequence

Transcript ID

Zm00001d043158_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:190365184:190368453:-1 gene:Zm00001d043158 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:beta tubulin6b description: beta tubulin6b
Sequence

GCACGGTGGGAAATTTGAAAACCACGCAAGGTGGAGAGAGATCTTGACCGAGCGCCGCGA
GGAGAGCTCGGAGCGGGAGGGTACGGGCCGTCGGATGCTCGCAGCTGCCACCGCCGCCTA
CGGCTATTTTAACCCCGCGCTCCTGCCGACGCCGCACTCGCCCCCGGCCTCCTCCCGCCT
CCCAGATCTCGCTCGCTCGGCGCCAGTTGCCTCGCAGTTTGGATCATCTCATACCTCGGC
GAAGATGAGGGAGATCCTGCACATCCAGGGAGGGCAATGTGGCAACCAGATTGGCGCCAA
GTTCTGGGAGGTGGTGTGCGATGAACATGGCATTGACCCTACCGGGCGGTACACTGGCAA
TTCCGACCTTCAGTTGGAGCGTGTTAATGTCTACTACAATGAAGCCTCCTGCGGACGCTT
TGTTCCCCGCGCTGTTCTCATGGATCTTGAGCCTGGGACAATGGACAGTGTCCGGACCGG
ACCCTATGGGCAGATCTTCCGCCCTGACAACTTTGTGTTTGGGCAATCTGGTGCTGGTAA
CAATTGGGCTAAGGGCCACTACACCGAGGGTGCTGAGCTCATTGACTCTGTTCTGGATGT
TGTGAGGAAGGAAGCTGAGAACTGTGACTGCTTGCAAGGATTCCAAGTATGCCACTCCCT
TGGTGGTGGTACTGGATCTGGTATGGGTACGCTGTTGATCTCAAAGATCAGGGAAGAGTA
CCCTGACCGCATGATGCTTACATTCTCAGTTTTCCCCTCACCGAAAGTATCTGATACCGT
GGTTGAGCCATACAATGCCACTCTTTCTGTCCACCAGTTGGTCGAGAATGCTGATGAGTG
CATGGTTCTCGATAACGAAGCCCTCTATGACATCTGCTTCAGGACTCTTAAGCTGACCAC
CCCTAGCTTTGGTGATCTGAACCATTTGATCTCTGCAACCATGAGTGGAGTCACCTGCTG
CCTAAGGTTCCCTGGTCAGCTGAACTCCGACCTCAGGAAGCTGGCAGTGAACCTGATCCC
CTTCCCCCGTCTCCACTTCTTCATGGTCGGCTTCGCGCCGCTGACGTCCCGTGGCTCCCA
GCAGTACCGGGCCCTCACAGTCCCCGAGCTCACGCAGCAGATGTGGGATGCCAAGAACAT
GATGTGTGCCGCTGACCCTCGCCATGGGCGTTACCTCACCGCCTCGGCCATGTTCCGCGG
GAAGATGAGCACCAAGGAGGTTGACGAGCAGATGATCAACGTCCAGAACAAGAACTCGTC
CTACTTCGTGGAGTGGATCCCCAACAACGTCAAGTCCAGCGTGTGCGACATCCCGCCCAG
GGGCCTGTCCATGGCGTCCACCTTCATCGGCAACTCGACCTCCATCCAGGAGATGTTCCG
GAGGGTGAGCGAGCAGTTCACTGCCATGTTCAGGAGGAAGGCTTTCTTGCACTGGTACAC
GGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGACCTCGT
GTCGGAGTACCAGCAGTACCAGGACGCGACTGCCGACGAGGAGGAGTACGAGGACGAGGA
GGAGGTGCAGGCCGATGACATGTGAGGGGAGGGCTGTTATCGTGTGAAGCCTTGTGGTGT
TCCCTTTCGTGTTGTTGCCATCTTTCTACTGCTAGCGTACCCACCCTCGTGGCCCATTCC
GTCGCTGTTGACGTATGTATTTTTCTTGTGCTATGGAACCTTGCTTTTGGTACGGTACT