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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043157_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:190361105:190364157:1 gene:Zm00001d043157 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein 20
Sequence

ATGAACGGCGGGCTCCCTGGATTCCACAATGCGCCGGCGTCAAAGGCCGTGGTCGTCGCC
GCAGGTCTCTTCTCCGTCGCCTTTGGCTTCCGCGGCCACTCCCTCAACCTCGGCCTTGCC
TACCAGAGTGTTTATGAAAAGCTGAGTGTATGGAGACTGATCACCTCATTGTTTGCTTTT
TCGTCAACCCCCGAGCTGATCTTTGGAGCAGCCCTGCTGTACTACTTTAGAGTGTTCGAA
CGCCAAATAGGTTCTAACAAGTATGCTGTCTTCATTATCTTCTCAACCATGGTGTCAGTA
CTGCTTCAGATCCTTTCTTTAGGTTACATGAAAGATCCTTCTCTAAATCCTTTGACATCA
GGACCATATGGCCTCATCTTTGCATCTTATGTGCCATTCTTCTTTGACATTCCAATCTCA
ATGAAGTTTCGCATATTTGGACTGAGCTTCAGTGATAAGTCATTCGTATATTTGGCAGGA
CTCCAGCTTCTTTTCTCATCTGGAAGACGTTCCATTGTGCCTGGACTTTCTGGCATACTG
GCTGGGCTTCTGTATCGCCTGAATACATTTGGCGTCCGTAGGTTGAAGTTCCCAGAGTTG
GCAACATCTCTCTTCTCGCAGTTGTCATTGCCCTTTTCAAGCAATCCATATCAAGGGTTA
CCGATCACAGAAAATGATGGAAGCATCCCTTCTCATCAGGCACATCAAATTGAGGATGCA
CGCGCAGCTACCCAAGATCCTACGGAGTCTTCTATTGCCGCACTGGTGACTATGGGCTTT
GATCGCAGTGCAGCAATTCAGGCGCTTGCATTGACCAACTACGATGTCAATTTGGCGTCG
AACATTCTGCTTGAAGCACAAGCTCTACAGCAATGA

Peptide Sequence

PEP ID

Zm00001d043157_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:190361105:190364157:1 gene:Zm00001d043157 transcript:Zm00001d043157_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein 20
Sequence

MNGGLPGFHNAPASKAVVVAAGLFSVAFGFRGHSLNLGLAYQSVYEKLSVWRLITSLFAF
SSTPELIFGAALLYYFRVFERQIGSNKYAVFIIFSTMVSVLLQILSLGYMKDPSLNPLTS
GPYGLIFASYVPFFFDIPISMKFRIFGLSFSDKSFVYLAGLQLLFSSGRRSIVPGLSGIL
AGLLYRLNTFGVRRLKFPELATSLFSQLSLPFSSNPYQGLPITENDGSIPSHQAHQIEDA
RAATQDPTESSIAALVTMGFDRSAAIQALALTNYDVNLASNILLEAQALQQ

Transcript Sequence

Transcript ID

Zm00001d043157_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:190361105:190364157:1 gene:Zm00001d043157 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein 20
Sequence

AGGGATCTCTCGAGCGCTTCGAGAAAGTTTCAGGCCCTCCGCCCCTGCAAGCGTCCACTG
ACCAGACCTGGCCAGCCCAGGCGTGGAGGTGCTCGTCTCCTCCGCCGCGCCGGGACCGGC
GATGAACGGCGGGCTCCCTGGATTCCACAATGCGCCGGCGTCAAAGGCCGTGGTCGTCGC
CGCAGGTCTCTTCTCCGTCGCCTTTGGCTTCCGCGGCCACTCCCTCAACCTCGGCCTTGC
CTACCAGAGTGTTTATGAAAAGCTGAGTGTATGGAGACTGATCACCTCATTGTTTGCTTT
TTCGTCAACCCCCGAGCTGATCTTTGGAGCAGCCCTGCTGTACTACTTTAGAGTGTTCGA
ACGCCAAATAGGTTCTAACAAGTATGCTGTCTTCATTATCTTCTCAACCATGGTGTCAGT
ACTGCTTCAGATCCTTTCTTTAGGTTACATGAAAGATCCTTCTCTAAATCCTTTGACATC
AGGACCATATGGCCTCATCTTTGCATCTTATGTGCCATTCTTCTTTGACATTCCAATCTC
AATGAAGTTTCGCATATTTGGACTGAGCTTCAGTGATAAGTCATTCGTATATTTGGCAGG
ACTCCAGCTTCTTTTCTCATCTGGAAGACGTTCCATTGTGCCTGGACTTTCTGGCATACT
GGCTGGGCTTCTGTATCGCCTGAATACATTTGGCGTCCGTAGGTTGAAGTTCCCAGAGTT
GGCAACATCTCTCTTCTCGCAGTTGTCATTGCCCTTTTCAAGCAATCCATATCAAGGGTT
ACCGATCACAGAAAATGATGGAAGCATCCCTTCTCATCAGGCACATCAAATTGAGGATGC
ACGCGCAGCTACCCAAGATCCTACGGAGTCTTCTATTGCCGCACTGGTGACTATGGGCTT
TGATCGCAGTGCAGCAATTCAGGCGCTTGCATTGACCAACTACGATGTCAATTTGGCGTC
GAACATTCTGCTTGAAGCACAAGCTCTACAGCAATGATACCCTGGCATCGAGTCACAAAA
GACGGGCAGATGCACTGTACATTAATGAGCGTTAAGTGTTTGATACTCCGATTCATTCTT
CTGTTCTAGATTTTATCACAGGTTTCCTTGAAACAAGCCACTGTATATGAACGTGAACTA
TGGGAACGAAAGACAATTGATGCAGGAGCTTTC