Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043095_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:3:189140852:189144370:-1 gene:Zm00001d043095 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger protein VAR3 chloroplastic
Sequence

ATGTATGTCATTGTTTCGGACAGAGCTGAAACTGTCGATATTGTTCGATATCTGCTAAGT
TACACATACGGTTCTTCTGTCAGCGACTCAGAACACAAGAAACTTATTGATTCTGCCGTG
AGAAATATCATGGCTGAGTTAGTGAGTTTTAGTGGTCTTTCCCAATCGTCCACTTTTGAG
GAATCAACTCCCAACCAAATTTGCTCGAGTCAGCTTGAACGATTTTCCAGGCCTCCAGGG
CAAAATATCGAAATGAAGCGAGGTGACTGGATTTGCACAAGATGTAGCTTCATGAACTTT
GCAAGAAATGTTAGGTGTCTTGAGTGCAATGAGCAGCGGCCAAAGAAGATGCTGACTGGT
GGAGAGTGGGAATGCCCTCAGTGTGATTTCTATAATTATGGGAGGAATATGTCATGTTTA
AAATGTGATTGCAAGAGGCCAGCAACAATCCCATCGATTCCTGCATCTGTTGGTTCTGGT
TTAGGTGGTGTGGCACAGCTTCTTAGTGTAACGAGTGCTGGTAAATCTGAAATTGAGAGA
AAACTTGCTGAAAGTGATAAAAAAGCAGAAAGATGGTTGAGCAAAGTATCTCAACTTCAA
GATTCAGCTGACTTAAGTAGTCTAGCAGAAGATGAGGACTTTCCTGAGATTATGCCTATG
CGCAAGGGGGTGAATAAGTTTGTGGTGAGCATGCACAAAACACCACTGGAAAGAAGGCTT
ACAAATGCACAGTACAGAAGTAACAATAGCCCCCCAGCATCCGACCCAAAGATAAGTCAA
ACTTTGGACAGGATACTTGGGCGTTCAACTCCTACTACAGCCCCAAACAATCAATCTGTT
ACTAGTGATGCACCTACTGAAGCTCTGAAGAAATCAACAGACCACCTCGGTGGCATTGAT
CCTGTTCCGTTTGTGCCCCTGTCTGCAGATCTCTTTGCAAAACCACAGACTAATAATGGA
CAGAGCAATCAGAATGGAAAAATCAATGCAGAAGATGACAGTTCCATGGTAAATAATGCA
GTCCCTTTACCTGAGAGGCAAAGCACAGGATCATTAGATACCGCTGAGATATGGTCTGAG
AAAGTAGCAGAACCTGACAATGCAAAGGATTCCCCAAGTGCAGTTTCTGATGAAAATTTT
CCTGAGATTATGCCAATAAGGAAAGGTGAAAACCGATTTGTTGTTAGTAAGAAAAAAGAT
CGCTCATTGACATCACAACAGTACAAAAGGCGCAGTATTCTTGAGCAGGCAGACAGTTCT
GATTTTGTCCCATTTGTTCCATTTCCTCCTGGCTACTTTGCCAAGAAAGATACACCAATA
GAGAGTACTACAGACACAGGAATCGTGCCCGAAGGCAGTCAACCAAAAGGTAACCTGAAT
AATGGGAACTGGAACATAAATTACAATAAGCATCAATCACAATCTCATGGGGCACAATGT
AGGCCTAGTGGTGCTGCATATACTGGCACTCGGATCATGGGCAACTCCCAGGGGAACTAC
AATGGGAGCAATGGTGAATCTACTTACCATGGAGCTAACTTTGAACAGGAACCTTATAAC
AAAGGTTATAGGAACAACAACTATTGGAGCAGTGATAACAATAACAGCAACAATGCCTGG
AGTAACAACAGCAATTTTAACAACAATAATGACTGGAGTGGTAACAATTCCTATAACAGC
AGTACTGAGAACGGTAATAGCAGCTACAACAGTAGTCATGGTTATAACTACAATGGTACA
TGGAGCGACAGCAACCACAGTGCATGGAGCAGTAGCAGCAGCAACAATAACCAGAGTGGT
TCATTTGTTGATAATAACAGTGTCACTAGCAGCCGCAGTTCCATGAATGATGCAAATCAC
GTGAGTCACAGCTCAGGTTATGGAGGAAGCTCAAACAGAGGTTATACTGGAAAGAGCTTG
GAAGGATCTGCTGTAAAGGATCCTGATCCACTAGACATGTCCGAGGAAGCTAAGGCTGAG
AGATGGTTTAGGAGGGCAGCTCAGATAAAGGACATCTCTGAGCTAGCGAACATTCCGGAC
GAGGACTTCCCTGAGATAATGCCGATGAGGAAGGGGGTAAACAGATTCGTTGTGAGCAAG
AGGAAGACACCATTGGAGAGGAGATTAACTTCCCCACAGTACAGAAGGAACCTGCCAATT
GTCAGATCTGAAACGGACGAGGATGCTAGCTGA

Peptide Sequence

PEP ID

Zm00001d043095_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:3:189140852:189144370:-1 gene:Zm00001d043095 transcript:Zm00001d043095_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger protein VAR3 chloroplastic
Sequence

MYVIVSDRAETVDIVRYLLSYTYGSSVSDSEHKKLIDSAVRNIMAELVSFSGLSQSSTFE
ESTPNQICSSQLERFSRPPGQNIEMKRGDWICTRCSFMNFARNVRCLECNEQRPKKMLTG
GEWECPQCDFYNYGRNMSCLKCDCKRPATIPSIPASVGSGLGGVAQLLSVTSAGKSEIER
KLAESDKKAERWLSKVSQLQDSADLSSLAEDEDFPEIMPMRKGVNKFVVSMHKTPLERRL
TNAQYRSNNSPPASDPKISQTLDRILGRSTPTTAPNNQSVTSDAPTEALKKSTDHLGGID
PVPFVPLSADLFAKPQTNNGQSNQNGKINAEDDSSMVNNAVPLPERQSTGSLDTAEIWSE
KVAEPDNAKDSPSAVSDENFPEIMPIRKGENRFVVSKKKDRSLTSQQYKRRSILEQADSS
DFVPFVPFPPGYFAKKDTPIESTTDTGIVPEGSQPKGNLNNGNWNINYNKHQSQSHGAQC
RPSGAAYTGTRIMGNSQGNYNGSNGESTYHGANFEQEPYNKGYRNNNYWSSDNNNSNNAW
SNNSNFNNNNDWSGNNSYNSSTENGNSSYNSSHGYNYNGTWSDSNHSAWSSSSSNNNQSG
SFVDNNSVTSSRSSMNDANHVSHSSGYGGSSNRGYTGKSLEGSAVKDPDPLDMSEEAKAE
RWFRRAAQIKDISELANIPDEDFPEIMPMRKGVNRFVVSKRKTPLERRLTSPQYRRNLPI
VRSETDEDAS

Transcript Sequence

Transcript ID

Zm00001d043095_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:189140852:189144370:-1 gene:Zm00001d043095 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger protein VAR3 chloroplastic
Sequence

GTCCAAGCTGCTCTCCTCCCTCCTCCTCACTTCCTCCCCGCTACGCCTCCGACCCACTAC
TGCCGCCGCCGCTGCGCTCTTCCTCACCCCGCCCGCGGCGGCCTCGCGCCGCCTGCTCCT
GCTCTCCTCGCCTTCCCCGCCCCGCACCCTCTCCACCTCGTCCTCTTCCCTTCCGCACGG
CTCCAGCCAGGCCTCCCCGGCGCCATCGCCCCGAGCTCCATTCCCCGAGTGGTCCCGCCT
CGTCGACCGGCTTGCCGCCGCCGGATACGGCTCCGGCGCTCCCTTTGCCGCTGACGATCT
CGCGATCGCCCTTGCCTCCGGATGCGGCCTGTCGGACGGGGCGCTGGCCGCTGTTTCCAC
CTGCCTCGCATTCGCGCGGGACCGGCCTGACCTCCTCAGTTCTCTTCCAAGGAAGGATGT
GAAGATCCTGGTGGCCAATGCGGCGCCGTCCCTGTTCAAAGACGGGGAGGCATCAGCGCT
GCGGCTTCGGCGCTACCTTGCTGGGGAAGAAACCGATGTATGTATGTCATTGTTTCGGAC
AGAGCTGAAACTGTCGATATTGTTCGATATCTGCTAAGTTACACATACGGTTCTTCTGTC
AGCGACTCAGAACACAAGAAACTTATTGATTCTGCCGTGAGAAATATCATGGCTGAGTTA
GTGAGTTTTAGTGGTCTTTCCCAATCGTCCACTTTTGAGGAATCAACTCCCAACCAAATT
TGCTCGAGTCAGCTTGAACGATTTTCCAGGCCTCCAGGGCAAAATATCGAAATGAAGCGA
GGTGACTGGATTTGCACAAGATGTAGCTTCATGAACTTTGCAAGAAATGTTAGGTGTCTT
GAGTGCAATGAGCAGCGGCCAAAGAAGATGCTGACTGGTGGAGAGTGGGAATGCCCTCAG
TGTGATTTCTATAATTATGGGAGGAATATGTCATGTTTAAAATGTGATTGCAAGAGGCCA
GCAACAATCCCATCGATTCCTGCATCTGTTGGTTCTGGTTTAGGTGGTGTGGCACAGCTT
CTTAGTGTAACGAGTGCTGGTAAATCTGAAATTGAGAGAAAACTTGCTGAAAGTGATAAA
AAAGCAGAAAGATGGTTGAGCAAAGTATCTCAACTTCAAGATTCAGCTGACTTAAGTAGT
CTAGCAGAAGATGAGGACTTTCCTGAGATTATGCCTATGCGCAAGGGGGTGAATAAGTTT
GTGGTGAGCATGCACAAAACACCACTGGAAAGAAGGCTTACAAATGCACAGTACAGAAGT
AACAATAGCCCCCCAGCATCCGACCCAAAGATAAGTCAAACTTTGGACAGGATACTTGGG
CGTTCAACTCCTACTACAGCCCCAAACAATCAATCTGTTACTAGTGATGCACCTACTGAA
GCTCTGAAGAAATCAACAGACCACCTCGGTGGCATTGATCCTGTTCCGTTTGTGCCCCTG
TCTGCAGATCTCTTTGCAAAACCACAGACTAATAATGGACAGAGCAATCAGAATGGAAAA
ATCAATGCAGAAGATGACAGTTCCATGGTAAATAATGCAGTCCCTTTACCTGAGAGGCAA
AGCACAGGATCATTAGATACCGCTGAGATATGGTCTGAGAAAGTAGCAGAACCTGACAAT
GCAAAGGATTCCCCAAGTGCAGTTTCTGATGAAAATTTTCCTGAGATTATGCCAATAAGG
AAAGGTGAAAACCGATTTGTTGTTAGTAAGAAAAAAGATCGCTCATTGACATCACAACAG
TACAAAAGGCGCAGTATTCTTGAGCAGGCAGACAGTTCTGATTTTGTCCCATTTGTTCCA
TTTCCTCCTGGCTACTTTGCCAAGAAAGATACACCAATAGAGAGTACTACAGACACAGGA
ATCGTGCCCGAAGGCAGTCAACCAAAAGGTAACCTGAATAATGGGAACTGGAACATAAAT
TACAATAAGCATCAATCACAATCTCATGGGGCACAATGTAGGCCTAGTGGTGCTGCATAT
ACTGGCACTCGGATCATGGGCAACTCCCAGGGGAACTACAATGGGAGCAATGGTGAATCT
ACTTACCATGGAGCTAACTTTGAACAGGAACCTTATAACAAAGGTTATAGGAACAACAAC
TATTGGAGCAGTGATAACAATAACAGCAACAATGCCTGGAGTAACAACAGCAATTTTAAC
AACAATAATGACTGGAGTGGTAACAATTCCTATAACAGCAGTACTGAGAACGGTAATAGC
AGCTACAACAGTAGTCATGGTTATAACTACAATGGTACATGGAGCGACAGCAACCACAGT
GCATGGAGCAGTAGCAGCAGCAACAATAACCAGAGTGGTTCATTTGTTGATAATAACAGT
GTCACTAGCAGCCGCAGTTCCATGAATGATGCAAATCACGTGAGTCACAGCTCAGGTTAT
GGAGGAAGCTCAAACAGAGGTTATACTGGAAAGAGCTTGGAAGGATCTGCTGTAAAGGAT
CCTGATCCACTAGACATGTCCGAGGAAGCTAAGGCTGAGAGATGGTTTAGGAGGGCAGCT
CAGATAAAGGACATCTCTGAGCTAGCGAACATTCCGGACGAGGACTTCCCTGAGATAATG
CCGATGAGGAAGGGGGTAAACAGATTCGTTGTGAGCAAGAGGAAGACACCATTGGAGAGG
AGATTAACTTCCCCACAGTACAGAAGGAACCTGCCAATTGTCAGATCTGAAACGGACGAG
GATGCTAGCTGAAAACAGAGGTATGATTGCCTGCATACCAGTACGGCAGTATACCACCAC
AGCCTTAACTGTGATGCGATTGCGATGTACCATTTTTATTTGTGACGATAAGCGAGCGAT
CGGAAACAGAAATCATGGAAAACAATACCCCAAGATAGTTTTCTGTATAGTAAAATTTTG
TTCGCAAGCCTGAGGTTTGCGGGATTGTCTTTGCTACTTCTAAACTATACAGATTTGCGT
TGT