Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043023_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:186815795:186820960:1 gene:Zm00001d043023 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RETICULATA-RELATED 6 chloroplastic
Sequence

ATGCTGCCGCACGCGCCATCCCGAACCTCGGGGGCCCTCAGGTTCAAACCGCACCTCCCC
ACCAAGCCGCCGCTCCTCACCTCTTCCTCCACCGCCACCCCCGCCTCTGCCTCCGCCTCC
ACGCGCGGCCGCCTCTGCGCCGCCGCCGCCGCCGCCGCCACACGCCGGGACCTCCTCGTC
CTCGTCCCCTCGCTAGTCGCAGCGTCCACCGTCCTCCAGTCCCTTCCCCTCGCCGCCTCC
GCCGCGGCAGGCGATGACAAGCCGGCCCCACCGACGCCGGCTCAGGCGCAGGCGCCCGCC
TCTCCGGCCTCGCCTCCGCCTCCGCCTCCAGCGGACGAGCCTGCTCTGTCGAGGGTATAC
GACGCCACGGTCATTGGGGAGCCCCAGGCCGTCGGGAAGGAAGCGCGGCGGAGGGTGTGG
GAGAAGCTGATTGCGGCCCGGGTGGTGTACCTCGGTGAGTCCGAGCTCGTGCCCGACCGC
GACGACAGGGTGCTCGAGCTCGAGATCGTCAGGAAGCTCGCGGCCGGCTGCGCCGAGGCC
GGGAGGAGCATCTCCCTCGCGCTCGAGGCCTTTCCCTGCGACCTCCAGGAGCAGCTCAAT
CGGTTCATGGATGGCAGAATTGATGGCAATACCTTAAGGCTTTATACATCTCACTGGGCA
CCAGAGCGATGGCAGGAGTATGAACCACTTCTGAATTACTGCCGTGATAATGGAATAAAG
CTTGTTGCATGTGGGACTCCACTTGAGGTGGTAAGAACTGTGCAAGCAGAAGGAATTAGA
AGCCTTTCAAAAGCTCAAAGAAAGCTTTATGCTCCTCCAGCTGGCTCAGGCTTCGTTTCT
GGCTTTACATCCATCTCAGGTCGATCATTGATAGACAAAATTTCATCAACTCGTGGTTCC
CCTTTTGGCCCAAGCTCATATTTATCAGCACAGGCAAGAGTAGTCGATGATTATACCATG
TCCCAGACAATAATGAAAGAAATTAGTAATGGAGATCCTTCAGGAATGCTCGTTGTTGTA
ACTGGTGCGAGTCATGTAATGTATGGGCCACGAGGAATTGGCGTTCCTGCTAGGATATCT
AAAAAGATGCAAAAGAAAAATCAAGTTGTGATACTTCTTGATCCTGAGAGGCAAAGTATA
AGGAGAGAAGGTGAAATCCCTGTAGCTGATTTCTTATGGTACTCTGCTGCCAAGCCATGC
AGTCGGAATTGCTTTGATCGTGCTGAAATTGCTAGAGTTATGAATGCTGCTGGCAGGAGG
CGTGAAGCTTTACCTCAGGATCTTCAGAAAGGAATAGATCTTGGTGTAGTTTCTCCTGAG
ATATTGCAGAACTTCTTTGACCTCGAGAAATACCCTGTCATGGCTGAACTGATTCACCGT
TTCCAAGGTTTTCGTGAAAGGTTGCTAGCAGACCCCAAGTTTCTGAATAGATTAGCTATT
GAAGAGGCCATATCAATAACTACCACTCTTCTAGCACAATATGAAAAACGAAAAGGACGT
TTTTTTGAAGAGATCGACTATGTTCTCACTGATACAATTAGGGGTTCTGTTGTTGACTTC
TTTACAGTGTGGCTTCCTGCACCTACAATTTCACTCTTATCTTTTGCCGACGATGGCTCT
GGTGAGAGTGTGGAGCTTCTGAAAGGAATTTTAGGATCACTGCCAGATAATGCATTTCAA
AAGGGTATTGTTGGGCAGAACTGGAACATTAACCAGAGGTTTGCATCGGTGCTTATGGGT
GGTCTAAAACTTGCTGGAGTTGGATTCATTTCTAGTATTGGAGCTGGAGTTGCTTCAGAT
GTCTTATATGGTGCCCGTCGGATTCTTAAACCTTCTGCAAATATGGAAGTGGGGCGCAAA
AGATCTCCGATCTGGAAATCAGCAGCTGTTTATAGTTGCTTCCTTGGAACATCAGCAAAC
CTGCGATATCAGGTCATAGCTGGTCTGATTGAGCATCGGCTAGGAGAGAATCTGATGGCC
TACTATGACCAGCCACTTATTGCTAACCTGTTGTCCTTTGTTTCAAGGACAGTTAACTCA
TACTGGGGAACACAGCAATGGATCGATCTTGCACGAGTTACAGGCGTGCAAAGAACTAAC
AAAGAGCTGCCTTCTCCTGAGGTTTCGAGCGCATCTGAAATGCCACTGCTAGAATGTGGC
ACGGCAGAGGTACAGAATGCGGACGACAGCAGTAACCAGTCAAATGACTTGACATAA

Peptide Sequence

PEP ID

Zm00001d043023_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:186815795:186820960:1 gene:Zm00001d043023 transcript:Zm00001d043023_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RETICULATA-RELATED 6 chloroplastic
Sequence

MLPHAPSRTSGALRFKPHLPTKPPLLTSSSTATPASASASTRGRLCAAAAAAATRRDLLV
LVPSLVAASTVLQSLPLAASAAAGDDKPAPPTPAQAQAPASPASPPPPPPADEPALSRVY
DATVIGEPQAVGKEARRRVWEKLIAARVVYLGESELVPDRDDRVLELEIVRKLAAGCAEA
GRSISLALEAFPCDLQEQLNRFMDGRIDGNTLRLYTSHWAPERWQEYEPLLNYCRDNGIK
LVACGTPLEVVRTVQAEGIRSLSKAQRKLYAPPAGSGFVSGFTSISGRSLIDKISSTRGS
PFGPSSYLSAQARVVDDYTMSQTIMKEISNGDPSGMLVVVTGASHVMYGPRGIGVPARIS
KKMQKKNQVVILLDPERQSIRREGEIPVADFLWYSAAKPCSRNCFDRAEIARVMNAAGRR
REALPQDLQKGIDLGVVSPEILQNFFDLEKYPVMAELIHRFQGFRERLLADPKFLNRLAI
EEAISITTTLLAQYEKRKGRFFEEIDYVLTDTIRGSVVDFFTVWLPAPTISLLSFADDGS
GESVELLKGILGSLPDNAFQKGIVGQNWNINQRFASVLMGGLKLAGVGFISSIGAGVASD
VLYGARRILKPSANMEVGRKRSPIWKSAAVYSCFLGTSANLRYQVIAGLIEHRLGENLMA
YYDQPLIANLLSFVSRTVNSYWGTQQWIDLARVTGVQRTNKELPSPEVSSASEMPLLECG
TAEVQNADDSSNQSNDLT

Transcript Sequence

Transcript ID

Zm00001d043023_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:186815795:186820960:1 gene:Zm00001d043023 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RETICULATA-RELATED 6 chloroplastic
Sequence

GCTGTAGCCTGTAGGTTAGGCTTTTGATGACAAATTTGATAGAAACATGCCTCAAAGTTC
AAACTACTGTTGAGAAGCGAAATAACCGAGATTTCCAAGTCCGTTCAAGAGTCTATTTCC
AACTGCTTCGTGCTTTCCCAGGTCCTCCATTTCACCCCCATCGCCGTGCACCGGCACCAG
CGCGGGCGCGCCTCGCCGCCCCCACCGCCGTATCAACGCACGAGGATGCTGCCGCACGCG
CCATCCCGAACCTCGGGGGCCCTCAGGTTCAAACCGCACCTCCCCACCAAGCCGCCGCTC
CTCACCTCTTCCTCCACCGCCACCCCCGCCTCTGCCTCCGCCTCCACGCGCGGCCGCCTC
TGCGCCGCCGCCGCCGCCGCCGCCACACGCCGGGACCTCCTCGTCCTCGTCCCCTCGCTA
GTCGCAGCGTCCACCGTCCTCCAGTCCCTTCCCCTCGCCGCCTCCGCCGCGGCAGGCGAT
GACAAGCCGGCCCCACCGACGCCGGCTCAGGCGCAGGCGCCCGCCTCTCCGGCCTCGCCT
CCGCCTCCGCCTCCAGCGGACGAGCCTGCTCTGTCGAGGGTATACGACGCCACGGTCATT
GGGGAGCCCCAGGCCGTCGGGAAGGAAGCGCGGCGGAGGGTGTGGGAGAAGCTGATTGCG
GCCCGGGTGGTGTACCTCGGTGAGTCCGAGCTCGTGCCCGACCGCGACGACAGGGTGCTC
GAGCTCGAGATCGTCAGGAAGCTCGCGGCCGGCTGCGCCGAGGCCGGGAGGAGCATCTCC
CTCGCGCTCGAGGCCTTTCCCTGCGACCTCCAGGAGCAGCTCAATCGGTTCATGGATGGC
AGAATTGATGGCAATACCTTAAGGCTTTATACATCTCACTGGGCACCAGAGCGATGGCAG
GAGTATGAACCACTTCTGAATTACTGCCGTGATAATGGAATAAAGCTTGTTGCATGTGGG
ACTCCACTTGAGGTGGTAAGAACTGTGCAAGCAGAAGGAATTAGAAGCCTTTCAAAAGCT
CAAAGAAAGCTTTATGCTCCTCCAGCTGGCTCAGGCTTCGTTTCTGGCTTTACATCCATC
TCAGGTCGATCATTGATAGACAAAATTTCATCAACTCGTGGTTCCCCTTTTGGCCCAAGC
TCATATTTATCAGCACAGGCAAGAGTAGTCGATGATTATACCATGTCCCAGACAATAATG
AAAGAAATTAGTAATGGAGATCCTTCAGGAATGCTCGTTGTTGTAACTGGTGCGAGTCAT
GTAATGTATGGGCCACGAGGAATTGGCGTTCCTGCTAGGATATCTAAAAAGATGCAAAAG
AAAAATCAAGTTGTGATACTTCTTGATCCTGAGAGGCAAAGTATAAGGAGAGAAGGTGAA
ATCCCTGTAGCTGATTTCTTATGGTACTCTGCTGCCAAGCCATGCAGTCGGAATTGCTTT
GATCGTGCTGAAATTGCTAGAGTTATGAATGCTGCTGGCAGGAGGCGTGAAGCTTTACCT
CAGGATCTTCAGAAAGGAATAGATCTTGGTGTAGTTTCTCCTGAGATATTGCAGAACTTC
TTTGACCTCGAGAAATACCCTGTCATGGCTGAACTGATTCACCGTTTCCAAGGTTTTCGT
GAAAGGTTGCTAGCAGACCCCAAGTTTCTGAATAGATTAGCTATTGAAGAGGCCATATCA
ATAACTACCACTCTTCTAGCACAATATGAAAAACGAAAAGGACGTTTTTTTGAAGAGATC
GACTATGTTCTCACTGATACAATTAGGGGTTCTGTTGTTGACTTCTTTACAGTGTGGCTT
CCTGCACCTACAATTTCACTCTTATCTTTTGCCGACGATGGCTCTGGTGAGAGTGTGGAG
CTTCTGAAAGGAATTTTAGGATCACTGCCAGATAATGCATTTCAAAAGGGTATTGTTGGG
CAGAACTGGAACATTAACCAGAGGTTTGCATCGGTGCTTATGGGTGGTCTAAAACTTGCT
GGAGTTGGATTCATTTCTAGTATTGGAGCTGGAGTTGCTTCAGATGTCTTATATGGTGCC
CGTCGGATTCTTAAACCTTCTGCAAATATGGAAGTGGGGCGCAAAAGATCTCCGATCTGG
AAATCAGCAGCTGTTTATAGTTGCTTCCTTGGAACATCAGCAAACCTGCGATATCAGGTC
ATAGCTGGTCTGATTGAGCATCGGCTAGGAGAGAATCTGATGGCCTACTATGACCAGCCA
CTTATTGCTAACCTGTTGTCCTTTGTTTCAAGGACAGTTAACTCATACTGGGGAACACAG
CAATGGATCGATCTTGCACGAGTTACAGGCGTGCAAAGAACTAACAAAGAGCTGCCTTCT
CCTGAGGTTTCGAGCGCATCTGAAATGCCACTGCTAGAATGTGGCACGGCAGAGGTACAG
AATGCGGACGACAGCAGTAACCAGTCAAATGACTTGACATAAGTTATCGCGCAGTGGCCA
TACAAAACACAGAGCAGCTTCCTTCCATGGCACACCGTATACTAGACAAACCGTACATGC
ATATAAATGGGACTGTCTTCTTAGAGCCAGGCTGTGAAGCTTAGCCATCGCGTCATGTGG
AGAGACGAATCTGAAATCCTGAAGAGTAAAGCTTTTGAAGACTTTCGACTTGTTATGATC
ACAGCCATTTTTACACACCATCATGGGGTGAATACCGTTTGTACATTCATAGAGGAGACG
GCCGAAGAATTCTTTGGAGCACGTACAGCATTTTACACGTGAAATTTGTTCAGAAAACAT
TACTGGAGATTGTCACATGGCAAAAAGGATCAGGATCGTTGCTTGTGAATTGTGATGCAC
CTTGTATGCAATGCACTTGAATCCAGAGTGCACGTGTGATTTTATTGTCT