Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043022_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:186795510:186813623:1 gene:Zm00001d043022 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sorting nexin 2B
Sequence

ATGATGGCCACCGAGCCCTTGTCCCCGGGGAATCTCGTCGAGGACGTCGAAACACTACCC
CTGGACTCCTCCTCCACTCTCGCGGCTACGACGGACCCGCTGCTCCGCCCACCTCCCCCC
TCGTCCACCTTCTCTCCCACCGCCGGTGAGAACCATGGCGCGTTTCTGGACGAGGAGGAT
GAGGACGTGGTGGATGACTTCACGCCTCCGCTGGCTCCCCATGCCGCTACGGCCGCGACG
AAGTCCCGCGAGGCGTCACCGTGGTTCGCTGAGATCACTGTCTCCGAGCCTAGGAAGCAC
GCGGAGCCCGCGACCGGAGCCGTGGGCGTCATTCCCGGCTCGGCCAGCTACGTCTCCTAC
CTCATCGCCACTCAGGTGCCCGACGGAGGCGAGTTCCGCGTGCGTCGGCGATTCCGTGAC
GTCGTGGCGCTCGCCGACCGCCTCGCGGAGACCCACCGCGGCCTCTTTGTACCGGCGCGG
CCCGACAAGAGCATCGTCGAGGGCCAGGTCATGCAGCGGCACGACTTCGTGAACCAGCGG
TGCGTCACCCTCCAGCGCTACCTCCGCCGCCTCGCCGCGCACCCCGTCGTCGGCCGCAAC
CCCATTCTCCACGCCTTCCTCACCGAGCCCAGCGGCATCCCCACTTCCGACGGTGAGTCT
CCCAGGTGGAGCCCTGCGATGAGTGCTGCTACGTCCATGGCTGCTTCCGCTCCAGTGACG
CCTACCAAGAGTGGGAGAGACTTTTTTGGGGTGTTCAAGGGCCTGAAGCAGACAGTGACG
AATGGGTGGGTGGCGGTAAGGCCGCCTCTAGTGGAGGAGGAGATTGACACAAAGTACCTT
GTGCACAAGGCCAAGCTTGAGGACTTGGAGAAACATCTGGTGACAGCATCTCAGCAGGCA
GAGGCATTTGTTAAAGCTTTTGACGATCTAAGATCAACGACAGGTCTCTTGGGAATGTCA
TTCATCAAACTGGCTATGTTTGAAAAGGAGCAGGCTGCGTGTAGTTCTCAGAAAAGACGA
GCTGCTGACATCAGTAATTTTGCCAGTGCTGTTATTAGAGTTAGCAGATCACAGACAAAA
CTAAACACTGAAATTGTAAAACATCTGGGTATTATCCATGAGTACATGGAGACAATGGCT
TCTGTTCATAATGCTTTTACTGATCGTTCCAATGCTTTGCTTCGTGTGCAAAATTTGTCA
GCAGATCTATATTTCTTGCATACCCGGGCAGGAAAACTTGAATCTGTATCAGCGAGAGGA
ATGGATCAGGAGAGATCAAGGTATCAAAAGATAGAAGAATTGAAAGAAACAGTAAGAGCC
ACGGAAGATGCAAAAACACGTGCACTTAAAGAATTGGAACTTATCAAGGAAAATAACATG
AATGAAATTAAAAGATTTAACAAGGAAAGGCGCCAGGATTTGGTGGAGATGCTAAAAGGC
TTTGTATTGGATCAGGCCACATACTCGGATCATTTTGCTACCATATGGACAAAGGTAGCA
GAAGAAACAAAAGGATATGCAAACAGCAGCAGTTGA

Peptide Sequence

PEP ID

Zm00001d043022_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:186795510:186813623:1 gene:Zm00001d043022 transcript:Zm00001d043022_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sorting nexin 2B
Sequence

MMATEPLSPGNLVEDVETLPLDSSSTLAATTDPLLRPPPPSSTFSPTAGENHGAFLDEED
EDVVDDFTPPLAPHAATAATKSREASPWFAEITVSEPRKHAEPATGAVGVIPGSASYVSY
LIATQVPDGGEFRVRRRFRDVVALADRLAETHRGLFVPARPDKSIVEGQVMQRHDFVNQR
CVTLQRYLRRLAAHPVVGRNPILHAFLTEPSGIPTSDGESPRWSPAMSAATSMAASAPVT
PTKSGRDFFGVFKGLKQTVTNGWVAVRPPLVEEEIDTKYLVHKAKLEDLEKHLVTASQQA
EAFVKAFDDLRSTTGLLGMSFIKLAMFEKEQAACSSQKRRAADISNFASAVIRVSRSQTK
LNTEIVKHLGIIHEYMETMASVHNAFTDRSNALLRVQNLSADLYFLHTRAGKLESVSARG
MDQERSRYQKIEELKETVRATEDAKTRALKELELIKENNMNEIKRFNKERRQDLVEMLKG
FVLDQATYSDHFATIWTKVAEETKGYANSSS

Transcript Sequence

Transcript ID

Zm00001d043022_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:186795510:186813623:1 gene:Zm00001d043022 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sorting nexin 2B
Sequence

ATAGCACGAAATGGTTTTGCCTTCGCTTTTGCTTATGCGTACGCGCGGCGAATCACGGCG
CCCACCTTCCAACCGGACTTGAGTCACTTGACTCCGCCGCGGGATTCCCCGCCAGATCTC
ATTCTCGCCCCAACCCTAACCGCCGACGGTGGCCATGATGGCCACCGAGCCCTTGTCCCC
GGGGAATCTCGTCGAGGACGTCGAAACACTACCCCTGGACTCCTCCTCCACTCTCGCGGC
TACGACGGACCCGCTGCTCCGCCCACCTCCCCCCTCGTCCACCTTCTCTCCCACCGCCGG
TGAGAACCATGGCGCGTTTCTGGACGAGGAGGATGAGGACGTGGTGGATGACTTCACGCC
TCCGCTGGCTCCCCATGCCGCTACGGCCGCGACGAAGTCCCGCGAGGCGTCACCGTGGTT
CGCTGAGATCACTGTCTCCGAGCCTAGGAAGCACGCGGAGCCCGCGACCGGAGCCGTGGG
CGTCATTCCCGGCTCGGCCAGCTACGTCTCCTACCTCATCGCCACTCAGGTGCCCGACGG
AGGCGAGTTCCGCGTGCGTCGGCGATTCCGTGACGTCGTGGCGCTCGCCGACCGCCTCGC
GGAGACCCACCGCGGCCTCTTTGTACCGGCGCGGCCCGACAAGAGCATCGTCGAGGGCCA
GGTCATGCAGCGGCACGACTTCGTGAACCAGCGGTGCGTCACCCTCCAGCGCTACCTCCG
CCGCCTCGCCGCGCACCCCGTCGTCGGCCGCAACCCCATTCTCCACGCCTTCCTCACCGA
GCCCAGCGGCATCCCCACTTCCGACGGTGAGTCTCCCAGGTGGAGCCCTGCGATGAGTGC
TGCTACGTCCATGGCTGCTTCCGCTCCAGTGACGCCTACCAAGAGTGGGAGAGACTTTTT
TGGGGTGTTCAAGGGCCTGAAGCAGACAGTGACGAATGGGTGGGTGGCGGTAAGGCCGCC
TCTAGTGGAGGAGGAGATTGACACAAAGTACCTTGTGCACAAGGCCAAGCTTGAGGACTT
GGAGAAACATCTGGTGACAGCATCTCAGCAGGCAGAGGCATTTGTTAAAGCTTTTGACGA
TCTAAGATCAACGACAGGTCTCTTGGGAATGTCATTCATCAAACTGGCTATGTTTGAAAA
GGAGCAGGCTGCGTGTAGTTCTCAGAAAAGACGAGCTGCTGACATCAGTAATTTTGCCAG
TGCTGTTATTAGAGTTAGCAGATCACAGACAAAACTAAACACTGAAATTGTAAAACATCT
GGGTATTATCCATGAGTACATGGAGACAATGGCTTCTGTTCATAATGCTTTTACTGATCG
TTCCAATGCTTTGCTTCGTGTGCAAAATTTGTCAGCAGATCTATATTTCTTGCATACCCG
GGCAGGAAAACTTGAATCTGTATCAGCGAGAGGAATGGATCAGGAGAGATCAAGGTATCA
AAAGATAGAAGAATTGAAAGAAACAGTAAGAGCCACGGAAGATGCAAAAACACGTGCACT
TAAAGAATTGGAACTTATCAAGGAAAATAACATGAATGAAATTAAAAGATTTAACAAGGA
AAGGCGCCAGGATTTGGTGGAGATGCTAAAAGGCTTTGTATTGGATCAGGCCACATACTC
GGATCATTTTGCTACCATATGGACAAAGGTAGCAGAAGAAACAAAAGGATATGCAAACAG
CAGCAGTTGAAGTAGGATGTACATATTCAGGTGAATTTGAGCTGTTACTGTGCAGCGTGA
ATAGCTACACTCATTGAGAATCATGCGACTGGCTTATACACAAACAGGACCACACTCTTC
ATTCCCGAAGGATACATTTCTATGGATTTTTCTGGGGATTGGTATCTCAAGTTGTGTACC
TGAATTTTTTCAGAAAATATAGCAATACCATTTTCCACGGCTTCGTTTCCGCAGCCTTGG
CTTCATACAGGGTTTACATTTTCGTTTTGTACTTTCAAAAAACTTTTTTGTTGACCAAAG
TTTGAATTTTATATTT