Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043012_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:3:186444825:186449882:-1 gene:Zm00001d043012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable methyltransferase PMT23
Sequence

ATGGCCATCTACTCCTTCCTTTCTGTTCGCAAGCGCCCAGTTGTTGTCGTCGCCGCCGTC
ACCCTCTTCATTGTCGTATCCTCTCTCTTCCTCCTCTTCAGCCCCGCACCGACAGCGCTC
CCGTTTTTCTCCTCCTCCTCTTCCCACCTCTCCTCTCAAGCTTCAATTGCTGCCGTCTCC
TCTAACGCATTTCCACCTGAGACCCCAACCTCTGTTGTCTCCAACTGGGTCAGCAGCAAC
ACTTCTGCTGATCGCGTCTCTGCTGACGCATCTCCGCCCGTAGTCGGAACCGCCATCGCG
TCTGATGCGGTCAGCAACAGCACGGCTGACCCGCCTAGGCCAGATACCACCGCCGCTGCT
GGCGACGCGAAGGCTGATGTGTCCCAACCAGATCACGGCATGCCCCCTGCCGCCACTGAA
GCGAGTGGATCGGCAGGCAACGGTGAGACAGCCGCGGGAGTCTCGAGCGAGAGGGATGAG
GAGGGGCAAGGCGGCGGCGGCGCCGTGGAGGAGCTACCATCGTGGGAGCTGTGCAAGGTG
GGGAAGGGGGTGGCGGCCGCGGACTACATCCCCTGCCTCGACAACGTGAAGGCGGTCAAG
GCACTCAAGTCGCTGCGGCACATGGAGCACCGGGAGAGGCACTGCCCGACAGATCCGAGG
CCGAGGTGCCTCGTGCCGCTGCCCGAGAGGTACCGGCGTCCGGTGCCGTGGCCACGCAGC
CGTGACATGATTTGGTATAATAATGTTCCTCATCCAAAGTTAGTGGAATACAAGAAGGAC
CAGAACTGGGTCAGGAAGTCTGGTAACTATTTTGTTTTCCCTGGAGGTGGGACTCAATTC
AAAAATGGCGTGGCTTCATACATTAAATTCATTGAACAGATTTTACCAAACATTCAATGG
GGAATCCATACAAGAACTGTCCTTGATGTTGGATGTGGTGTGGCCAGCTTTGGTGGATAT
TTGCTTGATAGGAATGTCATTACCATGTCTGTTGCACCCAAAGATGAGCATGAAGCTCAG
ATACAGTTTGCACTGGAGCGTGGGATTCCAGCATTTTTGGCAGTGATTGGAACACAAAAG
CTTCCTTTCCCTGATAATTCATTTGATGTCATCCACTGTGCAAGGTGTAGGGTCCACTGG
TATGCTGATGGTGGAAAACCATTGTTGGAGCTCAATAGAGTACTCAGGCCTGGAGGGTAT
TACATTTGGTCTGCAACACCTGTCTATCGCAAAAACCCAAGAGATATAGATGATTGGAAT
GCGGTGGTAGCTCTGACCAAATCGATCTGCTGGAGGACAGTGGTAAGGTCTCGAGATATC
AATAAGATCGGAGTTGTTATATACCAAAAGCCGACATCAAATTCATGCTCCCTTGAGAGA
AAAAATAATGAACCACCTCTGTGCTCTGAGAGTGATGGATCACGTTTCCCTTGGTATAAA
CCTCTCGATAGTTGCCTCTTTCCTGCAGTTCCGAGTTCAGGTGAAGGGAATAGTTGGGCC
GTCTCGTGGCCTGAAAGACTTAATATTAAGCACTCGGCTACATCTAACAATTCTTCCATT
CAGTTTCCTCAAGAAAAAATTGATTCTGATACAAGTTATTGGAAGGACCTTGTTTCAGAA
ATATATCTCAACGAATTTGCAGTTAATTGGTCTAGTGTTCGCAATGTTATGGACATGAAT
GCGGGTTTTGGAGGATTTGCAGCATCAATTATCAATCGACCGTTGTGGGTTATGAATGTT
GTACCTGTTGATCAGCCAGATACATTGCACATCATTTTCAACAGAGGTCTGATTGGGGTA
TATCATGACTGGTGTGAATCTTTTAACACATACCCACGAACTTATGATCTTATTCACATG
AGTTATCTCTTAGGGCCCCTTACGAAAAGGTGCCACATCATTGAAGTTGCAGCTGAAATT
GACAGAATACTTAGACCTGGTAGATGGTTTGTGCTGCAAGACACTATAGACATGATAAGA
AAGATGGACCCTGTTCTCAGGTCTTTGCATTACAAGACTACAATTGTCAAACATCAATTT
CTTCTTGCCACCAAGGGTTTCTGGCGCCCTGGCAGTATAGGTTCTTAG

Peptide Sequence

PEP ID

Zm00001d043012_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:3:186444825:186449882:-1 gene:Zm00001d043012 transcript:Zm00001d043012_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable methyltransferase PMT23
Sequence

MAIYSFLSVRKRPVVVVAAVTLFIVVSSLFLLFSPAPTALPFFSSSSSHLSSQASIAAVS
SNAFPPETPTSVVSNWVSSNTSADRVSADASPPVVGTAIASDAVSNSTADPPRPDTTAAA
GDAKADVSQPDHGMPPAATEASGSAGNGETAAGVSSERDEEGQGGGGAVEELPSWELCKV
GKGVAAADYIPCLDNVKAVKALKSLRHMEHRERHCPTDPRPRCLVPLPERYRRPVPWPRS
RDMIWYNNVPHPKLVEYKKDQNWVRKSGNYFVFPGGGTQFKNGVASYIKFIEQILPNIQW
GIHTRTVLDVGCGVASFGGYLLDRNVITMSVAPKDEHEAQIQFALERGIPAFLAVIGTQK
LPFPDNSFDVIHCARCRVHWYADGGKPLLELNRVLRPGGYYIWSATPVYRKNPRDIDDWN
AVVALTKSICWRTVVRSRDINKIGVVIYQKPTSNSCSLERKNNEPPLCSESDGSRFPWYK
PLDSCLFPAVPSSGEGNSWAVSWPERLNIKHSATSNNSSIQFPQEKIDSDTSYWKDLVSE
IYLNEFAVNWSSVRNVMDMNAGFGGFAASIINRPLWVMNVVPVDQPDTLHIIFNRGLIGV
YHDWCESFNTYPRTYDLIHMSYLLGPLTKRCHIIEVAAEIDRILRPGRWFVLQDTIDMIR
KMDPVLRSLHYKTTIVKHQFLLATKGFWRPGSIGS

Transcript Sequence

Transcript ID

Zm00001d043012_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:186444825:186449882:-1 gene:Zm00001d043012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable methyltransferase PMT23
Sequence

GCAGTCCCGGTTCCCGTTCACCACCTCCGAACCAGAGGAGGAATGGCCATCTACTCCTTC
CTTTCTGTTCGCAAGCGCCCAGTTGTTGTCGTCGCCGCCGTCACCCTCTTCATTGTCGTA
TCCTCTCTCTTCCTCCTCTTCAGCCCCGCACCGACAGCGCTCCCGTTTTTCTCCTCCTCC
TCTTCCCACCTCTCCTCTCAAGCTTCAATTGCTGCCGTCTCCTCTAACGCATTTCCACCT
GAGACCCCAACCTCTGTTGTCTCCAACTGGGTCAGCAGCAACACTTCTGCTGATCGCGTC
TCTGCTGACGCATCTCCGCCCGTAGTCGGAACCGCCATCGCGTCTGATGCGGTCAGCAAC
AGCACGGCTGACCCGCCTAGGCCAGATACCACCGCCGCTGCTGGCGACGCGAAGGCTGAT
GTGTCCCAACCAGATCACGGCATGCCCCCTGCCGCCACTGAAGCGAGTGGATCGGCAGGC
AACGGTGAGACAGCCGCGGGAGTCTCGAGCGAGAGGGATGAGGAGGGGCAAGGCGGCGGC
GGCGCCGTGGAGGAGCTACCATCGTGGGAGCTGTGCAAGGTGGGGAAGGGGGTGGCGGCC
GCGGACTACATCCCCTGCCTCGACAACGTGAAGGCGGTCAAGGCACTCAAGTCGCTGCGG
CACATGGAGCACCGGGAGAGGCACTGCCCGACAGATCCGAGGCCGAGGTGCCTCGTGCCG
CTGCCCGAGAGGTACCGGCGTCCGGTGCCGTGGCCACGCAGCCGTGACATGATTTGGTAT
AATAATGTTCCTCATCCAAAGTTAGTGGAATACAAGAAGGACCAGAACTGGGTCAGGAAG
TCTGGTAACTATTTTGTTTTCCCTGGAGGTGGGACTCAATTCAAAAATGGCGTGGCTTCA
TACATTAAATTCATTGAACAGATTTTACCAAACATTCAATGGGGAATCCATACAAGAACT
GTCCTTGATGTTGGATGTGGTGTGGCCAGCTTTGGTGGATATTTGCTTGATAGGAATGTC
ATTACCATGTCTGTTGCACCCAAAGATGAGCATGAAGCTCAGATACAGTTTGCACTGGAG
CGTGGGATTCCAGCATTTTTGGCAGTGATTGGAACACAAAAGCTTCCTTTCCCTGATAAT
TCATTTGATGTCATCCACTGTGCAAGGTGTAGGGTCCACTGGTATGCTGATGGTGGAAAA
CCATTGTTGGAGCTCAATAGAGTACTCAGGCCTGGAGGGTATTACATTTGGTCTGCAACA
CCTGTCTATCGCAAAAACCCAAGAGATATAGATGATTGGAATGCGGTGGTAGCTCTGACC
AAATCGATCTGCTGGAGGACAGTGGTAAGGTCTCGAGATATCAATAAGATCGGAGTTGTT
ATATACCAAAAGCCGACATCAAATTCATGCTCCCTTGAGAGAAAAAATAATGAACCACCT
CTGTGCTCTGAGAGTGATGGATCACGTTTCCCTTGGTATAAACCTCTCGATAGTTGCCTC
TTTCCTGCAGTTCCGAGTTCAGGTGAAGGGAATAGTTGGGCCGTCTCGTGGCCTGAAAGA
CTTAATATTAAGCACTCGGCTACATCTAACAATTCTTCCATTCAGTTTCCTCAAGAAAAA
ATTGATTCTGATACAAGTTATTGGAAGGACCTTGTTTCAGAAATATATCTCAACGAATTT
GCAGTTAATTGGTCTAGTGTTCGCAATGTTATGGACATGAATGCGGGTTTTGGAGGATTT
GCAGCATCAATTATCAATCGACCGTTGTGGGTTATGAATGTTGTACCTGTTGATCAGCCA
GATACATTGCACATCATTTTCAACAGAGGTCTGATTGGGGTATATCATGACTGGTGTGAA
TCTTTTAACACATACCCACGAACTTATGATCTTATTCACATGAGTTATCTCTTAGGGCCC
CTTACGAAAAGGTGCCACATCATTGAAGTTGCAGCTGAAATTGACAGAATACTTAGACCT
GGTAGATGGTTTGTGCTGCAAGACACTATAGACATGATAAGAAAGATGGACCCTGTTCTC
AGGTCTTTGCATTACAAGACTACAATTGTCAAACATCAATTTCTTCTTGCCACCAAGGGT
TTCTGGCGCCCTGGCAGTATAGGTTCTTAGTCATGATGATTCCGGCTTCCACCCAAAATG
GTATTGGCTCCATGGACTCATTGTGTTGATTCTTCTTATTCTTTTTACGTCGATTCTTCT
CATAGCATAGATTAGATGCTTCATTGAAGCCCCATATCAAGTTGAGTTTCATGTTCCAAT
TTTCCCGCTTTGTTTTACTATTTTAAAAATGTTTTGGCCTTGGTCATGCAAATTTCTGTT
TGTTATTGCAAACAGGTTAAATCAATAGGTTAGTGCTAAAAATTCTGTTAGGCGAATTCT
ATTTTTTTTCAATATATATTTAGCTATAAACTTCTACT