Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d043011_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:186401233:186401862:1 gene:Zm00001d043011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

ATGGATCCCTCCGGGCCTGGCCCGTCGTCGGTCGTGGGGGCAGGAGGCGGCGAGGCACCG
GCCGTGGCGCCGCAGCGGCCGGCGCAGCTGAGTAGGTACGAGTCGCAGAAGCGGAGGGAC
TGGAACACGTTCCTGCAGTACCTGCGGAACCACCGGCCGCCGCTGACGCTGGCGCGGTGC
AGCGGCGCGCACGTGATCGAGTTCCTGAGGTACCTGGACCAGTTCGGCAAGACCAAGGTG
CACGCCGCCGGGTGCGCCTACTACGGCCAGCCCGCGCCTCCGGGGCCCTGCCCGTGCCCG
CTGCGGCAGGCGTGGGGGTCGCTCGACGCGCTCATCGGCCGCCTGCGCGCGGCGTACGAG
GAGAGCGGCGGGACGCCCGAGTCCAACCCCTTCGCCGCGCGCGCTGTGCGGATCTACCTG
CGCGAAGTGCGCGACTCGCAGGCCAAGGCGCGCGGCATCCCCTACGAGAAGAAGAAGCGC
AAACGCACGCAGCAGGCGGCCGCGGAGGCTTCGACGAGCTCGTCAGCTGCTGCTGCTGCC
GGCGGGAGCGGGAGCGGGAGCGGCAGGGCTGCTGCTGCTTCGTCCGCCGCTCAGGCTGGA
GGGAGTAGCGCTGCACCGAGCACCACTTGA

Peptide Sequence

PEP ID

Zm00001d043011_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:186401233:186401862:1 gene:Zm00001d043011 transcript:Zm00001d043011_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

MDPSGPGPSSVVGAGGGEAPAVAPQRPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARC
SGAHVIEFLRYLDQFGKTKVHAAGCAYYGQPAPPGPCPCPLRQAWGSLDALIGRLRAAYE
ESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRTQQAAAEASTSSSAAAAA
GGSGSGSGRAAAASSAAQAGGSSAAPSTT

Transcript Sequence

Transcript ID

Zm00001d043011_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:186401233:186401862:1 gene:Zm00001d043011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Sequence

ATGGATCCCTCCGGGCCTGGCCCGTCGTCGGTCGTGGGGGCAGGAGGCGGCGAGGCACCG
GCCGTGGCGCCGCAGCGGCCGGCGCAGCTGAGTAGGTACGAGTCGCAGAAGCGGAGGGAC
TGGAACACGTTCCTGCAGTACCTGCGGAACCACCGGCCGCCGCTGACGCTGGCGCGGTGC
AGCGGCGCGCACGTGATCGAGTTCCTGAGGTACCTGGACCAGTTCGGCAAGACCAAGGTG
CACGCCGCCGGGTGCGCCTACTACGGCCAGCCCGCGCCTCCGGGGCCCTGCCCGTGCCCG
CTGCGGCAGGCGTGGGGGTCGCTCGACGCGCTCATCGGCCGCCTGCGCGCGGCGTACGAG
GAGAGCGGCGGGACGCCCGAGTCCAACCCCTTCGCCGCGCGCGCTGTGCGGATCTACCTG
CGCGAAGTGCGCGACTCGCAGGCCAAGGCGCGCGGCATCCCCTACGAGAAGAAGAAGCGC
AAACGCACGCAGCAGGCGGCCGCGGAGGCTTCGACGAGCTCGTCAGCTGCTGCTGCTGCC
GGCGGGAGCGGGAGCGGGAGCGGCAGGGCTGCTGCTGCTTCGTCCGCCGCTCAGGCTGGA
GGGAGTAGCGCTGCACCGAGCACCACTTGA