Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042979_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:3:185649908:185654952:-1 gene:Zm00001d042979 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP binding protein

Sequence

ATGGCGGCGCCGGGGCTGGACAAGGTCATGGCGTTCCTCACCGACCACGGCTTCGCCGGC
GCGGCCTCCGCGCTTCGTGACGACGTCCTTGAACGCACCGCCGCCGGGGACGAAAGCCAC
GACGCCGCATTAGATCCCCACCTCCCGCCGCTCCGGATGCCCGCCTCCGCCGGCGGTGCC
GGTGCCGGTGCCGGTGCCGGCGCTGGCGCTGGCACGCCGACGCCCGCGAGCCCCGGTTCC
AGCTCCGGTTCGGCGTCCTCATCAGCTTTCGTAAGCTTGCGCTCCACACCCTCAGGGCTG
TTGAATCCGTATGGACTATGGTCGCCGCGGCATTCGCAGTCGGACGCGTCTTCATCGGAG
ATGGAGTTTGGTACAGCGCGCCAGTACGACACCACCGACCTCTTCTTCCAAGAGGATTGG
CTCTACGACGATCACCTCTTCCCTAGCAAGCTGGACGATGAGGATGACGAAGGCAAAGAG
GAGGACAAATTTGTACTGGATGCTCACGATGGTTCGGAGCAGGTTGAAATAGGCAAGCTT
GGTGCAGGCCATAACCACCGTCACGAACACATCGGTGGTGACCGATGCGAGGGTTGTGCT
GAGGTGTACATATGCTCATCGCCACTCTGTGGTTGTTGTGGAGGGGGACTCAAGAATGAT
GGGCTTGATGTGGCCAGGAGCTCAAGCTCCACTGTGTATGGGAGATACAAGATCATGGAT
GACCAGACAGAGATATTGGATGATTGTGCGCAGGATGCGTTTCAGTTGAAGCAGAGTAGA
GATATTATGTTTGAATGCGGTATGACGAGGGATCCTGGACGAGGATATGATGATTCAGGG
CTGAGTGTTGTGGAGAAGGAGCTTCAAATACTCAGTTCATTTGATACTGTTGTGAAGGCT
ATCTTTTGCTTATGTGCTGGTCTAATTCTCTTCATGAATTTCATAGATCACGGTACATAT
GATTTCACGGAAAATGGTGAGCTCAATGGCAGCTGTGACAAAAATCTGAAAAGCAGCATT
CATAAAGAATATCCGAAAGGTCATAGGATACAGCCATTCCCTGAAAGTGGTGATCTTGAT
GAAGCTGATGAGTTTCGACATGTTGGATCATTAAATACAGATGTTCAACATTCTACTGCT
CTTAAAGCTGAGGAAGATGCCGAGACAAATATTGATCTTGCTCTCTCTGATTTTCACCGA
GAATATGAGGTATTTGAATTGAGAATTATCCACCGCAAGAACAGGACTGGATTTGAAGAA
AACAAAGATTTCCCCATCGTCTTAAATTCGGTTGTTGCTGGAAGGTATTATATCACTGAA
TATCTAGGCTCAGCTGCATTCAGCAAGGTTGTGCAAGCACATGATCTTCGTACAGGAATG
GATGTTTGCCTTAAAATAATTAAAAATGATAAGGACTTCTTCGACCAGAGCTTGGATGAG
ATAAAACTTCTGAAGTTCGTGAACAAATATGATCCACTAGATGAACACCATGTGTTGCGC
CTCTATGACTACTTTTACCATCAGGAACACCTTTTTATTGTCACTGAACTACTGCGAGCA
AATCTATACGAGTTTCAGAAATATAATCAAGAATCTGGTGGTGAGGTGTATTTTACTTTG
CCTAGGATACAGGTTATAGCTCGGCAATGTTTGGAGGCCTTGGTTTACTTGCACCGTCTG
AGGATCATTCATTGTGACCTAAAGCCAGAAAATATTCTTATCAAGAGCTACAGTAGATGT
GAAATTAAAGTCATTGATCTGGGAAGTAGTTGCTTCTTGACAGACAACTTATGTCTCTAT
GTCCAATCACGCTCTTATCGAGCTCCTGAGGTCATTCTAGGCCTACCTTATGATCAGAGG
ATTGATATTTGGTCTCTTGGTTGCATCCTTTCTGAATTGTATACTGGTGAAGTATTATTT
CCTAACGAGCCTGTGTCCGTAATGCTTGCTCAAATGATTGGGATAACCGGCCCAATTGAC
ATGGAAATGCTAGAATTGGGACAGGAGACACAGAAGTATTTCACTGATGATTATGACCTT
TTTACCGAGAATGAGGAGACAGATCAGCTAGAGTATTTGATCCCGGAGAAATCCTCCTTG
CGACAACACATACAATGTCCTGATTCAGAGTTTGTCGATTTTCTGTCTTATCTACTGCAA
ATTAACCCCAGGAAAAGACCTACAGCTGACGAAGCACTACAGCATCCATGGCTTTCTTTC
TCGTACTAA

Peptide Sequence

PEP ID

Zm00001d042979_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:3:185649908:185654952:-1 gene:Zm00001d042979 transcript:Zm00001d042979_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP binding protein

Sequence

MAAPGLDKVMAFLTDHGFAGAASALRDDVLERTAAGDESHDAALDPHLPPLRMPASAGGA
GAGAGAGAGAGTPTPASPGSSSGSASSSAFVSLRSTPSGLLNPYGLWSPRHSQSDASSSE
MEFGTARQYDTTDLFFQEDWLYDDHLFPSKLDDEDDEGKEEDKFVLDAHDGSEQVEIGKL
GAGHNHRHEHIGGDRCEGCAEVYICSSPLCGCCGGGLKNDGLDVARSSSSTVYGRYKIMD
DQTEILDDCAQDAFQLKQSRDIMFECGMTRDPGRGYDDSGLSVVEKELQILSSFDTVVKA
IFCLCAGLILFMNFIDHGTYDFTENGELNGSCDKNLKSSIHKEYPKGHRIQPFPESGDLD
EADEFRHVGSLNTDVQHSTALKAEEDAETNIDLALSDFHREYEVFELRIIHRKNRTGFEE
NKDFPIVLNSVVAGRYYITEYLGSAAFSKVVQAHDLRTGMDVCLKIIKNDKDFFDQSLDE
IKLLKFVNKYDPLDEHHVLRLYDYFYHQEHLFIVTELLRANLYEFQKYNQESGGEVYFTL
PRIQVIARQCLEALVYLHRLRIIHCDLKPENILIKSYSRCEIKVIDLGSSCFLTDNLCLY
VQSRSYRAPEVILGLPYDQRIDIWSLGCILSELYTGEVLFPNEPVSVMLAQMIGITGPID
MEMLELGQETQKYFTDDYDLFTENEETDQLEYLIPEKSSLRQHIQCPDSEFVDFLSYLLQ
INPRKRPTADEALQHPWLSFSY

Transcript Sequence

Transcript ID

Zm00001d042979_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:185649908:185654952:-1 gene:Zm00001d042979 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP binding protein

Sequence

GATCCGTGCGCCTCTGCAATCCTCTGTCTCTCTTTCCTCTGACTTCGCTGCCTCCTCGTC
CGTCTCGCCCGGTCCTCTCACTCGAAGACTCTCGCTTCGCTTCCAAGTTCACCCCAATGG
CGACGCAACCGCTTACATCACCGCGCGCTTGAGCGAGAGACCGATAGCCCCCACCAACCG
CGCGCCTTCGCGGAGCATGGCGGCGCCGGGGCTGGACAAGGTCATGGCGTTCCTCACCGA
CCACGGCTTCGCCGGCGCGGCCTCCGCGCTTCGTGACGACGTCCTTGAACGCACCGCCGC
CGGGGACGAAAGCCACGACGCCGCATTAGATCCCCACCTCCCGCCGCTCCGGATGCCCGC
CTCCGCCGGCGGTGCCGGTGCCGGTGCCGGTGCCGGCGCTGGCGCTGGCACGCCGACGCC
CGCGAGCCCCGGTTCCAGCTCCGGTTCGGCGTCCTCATCAGCTTTCGTAAGCTTGCGCTC
CACACCCTCAGGGCTGTTGAATCCGTATGGACTATGGTCGCCGCGGCATTCGCAGTCGGA
CGCGTCTTCATCGGAGATGGAGTTTGGTACAGCGCGCCAGTACGACACCACCGACCTCTT
CTTCCAAGAGGATTGGCTCTACGACGATCACCTCTTCCCTAGCAAGCTGGACGATGAGGA
TGACGAAGGCAAAGAGGAGGACAAATTTGTACTGGATGCTCACGATGGTTCGGAGCAGGT
TGAAATAGGCAAGCTTGGTGCAGGCCATAACCACCGTCACGAACACATCGGTGGTGACCG
ATGCGAGGGTTGTGCTGAGGTGTACATATGCTCATCGCCACTCTGTGGTTGTTGTGGAGG
GGGACTCAAGAATGATGGGCTTGATGTGGCCAGGAGCTCAAGCTCCACTGTGTATGGGAG
ATACAAGATCATGGATGACCAGACAGAGATATTGGATGATTGTGCGCAGGATGCGTTTCA
GTTGAAGCAGAGTAGAGATATTATGTTTGAATGCGGTATGACGAGGGATCCTGGACGAGG
ATATGATGATTCAGGGCTGAGTGTTGTGGAGAAGGAGCTTCAAATACTCAGTTCATTTGA
TACTGTTGTGAAGGCTATCTTTTGCTTATGTGCTGGTCTAATTCTCTTCATGAATTTCAT
AGATCACGGTACATATGATTTCACGGAAAATGGTGAGCTCAATGGCAGCTGTGACAAAAA
TCTGAAAAGCAGCATTCATAAAGAATATCCGAAAGGTCATAGGATACAGCCATTCCCTGA
AAGTGGTGATCTTGATGAAGCTGATGAGTTTCGACATGTTGGATCATTAAATACAGATGT
TCAACATTCTACTGCTCTTAAAGCTGAGGAAGATGCCGAGACAAATATTGATCTTGCTCT
CTCTGATTTTCACCGAGAATATGAGGTATTTGAATTGAGAATTATCCACCGCAAGAACAG
GACTGGATTTGAAGAAAACAAAGATTTCCCCATCGTCTTAAATTCGGTTGTTGCTGGAAG
GTATTATATCACTGAATATCTAGGCTCAGCTGCATTCAGCAAGGTTGTGCAAGCACATGA
TCTTCGTACAGGAATGGATGTTTGCCTTAAAATAATTAAAAATGATAAGGACTTCTTCGA
CCAGAGCTTGGATGAGATAAAACTTCTGAAGTTCGTGAACAAATATGATCCACTAGATGA
ACACCATGTGTTGCGCCTCTATGACTACTTTTACCATCAGGAACACCTTTTTATTGTCAC
TGAACTACTGCGAGCAAATCTATACGAGTTTCAGAAATATAATCAAGAATCTGGTGGTGA
GGTGTATTTTACTTTGCCTAGGATACAGGTTATAGCTCGGCAATGTTTGGAGGCCTTGGT
TTACTTGCACCGTCTGAGGATCATTCATTGTGACCTAAAGCCAGAAAATATTCTTATCAA
GAGCTACAGTAGATGTGAAATTAAAGTCATTGATCTGGGAAGTAGTTGCTTCTTGACAGA
CAACTTATGTCTCTATGTCCAATCACGCTCTTATCGAGCTCCTGAGGTCATTCTAGGCCT
ACCTTATGATCAGAGGATTGATATTTGGTCTCTTGGTTGCATCCTTTCTGAATTGTATAC
TGGTGAAGTATTATTTCCTAACGAGCCTGTGTCCGTAATGCTTGCTCAAATGATTGGGAT
AACCGGCCCAATTGACATGGAAATGCTAGAATTGGGACAGGAGACACAGAAGTATTTCAC
TGATGATTATGACCTTTTTACCGAGAATGAGGAGACAGATCAGCTAGAGTATTTGATCCC
GGAGAAATCCTCCTTGCGACAACACATACAATGTCCTGATTCAGAGTTTGTCGATTTTCT
GTCTTATCTACTGCAAATTAACCCCAGGAAAAGACCTACAGCTGACGAAGCACTACAGCA
TCCATGGCTTTCTTTCTCGTACTAATGAGAAGCCATCCGGTGCTTTCTTCACATATAAAG
GTTACTTTGTCTCCTGACATGGAGCCCTCATAAACTTATTGAAAAATATCGATTTTCTTG
GTGTTTCTCTTAATTAACGCTAATCATTACTCTTTTCCTTCTGTTGTAGAATAGCCCTCC
TTTTCTGGGTGC