Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d042978_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:185628580:185630553:-1 gene:Zm00001d042978 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGCCGCCCACTACAGCCCCGGCCGCTGCCGCGGCGCTCCCATCACCTTCTCACCGCAGG CTCCCCGCCGCGAAATCCGTCTGGCTGAACCCCAACCTCCCCTCTTCTCACCCCCTCCAC CAGCGCCACAAGTCCGCCGCCGAGCTCCAACAACGGCAGCACGATGACCGTACGATCGAC GTCCCGGCCCTCGTCACCGCGCTCTCGGCCGCGCGGACGGCTCCCGACCTGGCAGCCGTG CTCGCCACGCACCGACCCGTCTCCGCGCGCCTCCTCGGTGCGCTCCTCTCCCGCCTCCCC GACCCCCGCCGCGGCGTCGCGCTGCTCGACCTCCTCGCGCCGGACCTCCCCGCCCCCACG CTCCTCATCCCATATAACCTACTGCTCCGCTCTGCTTGCCGCGCTGGCGAGCTCCGCCTC GCCTCCGGCCTCCTCCTCGAGATGCGGGAGAGGGGCGTGACCCCCGACGCGTTCTCGTAC TCCACCCTCCTCGCCGCGCTCACCCGTGCGGGCCACCTCGACCACGCGCTCACCTTCCTG CCGCTCATGGAGGATGACGCCGTGGCTCCGGACCTGATCCTCTTCTCCAACCTCATTCAC CTCGCCCTCCGCGGTGGCGACGCGCCCAAGGCGCTGGCGCTGTTCTCCCGGCTGCGTGCC GCGGGGATCAGGCCCGACCTCAAGGCATACAACGCGGCCGTCGCCGCCTACTGCAAGTCC GACCTTCTCCGCGACGCCAAGCGGATGCTGCTCCACGACATGCCGGCCGACGGCGTCGCG CCCGACGCGGAGACATACTCCCCCATCCTCGCGGCGCTGGCGCGAAGGGGGCGGCACCTC GCGGCCGTGTCGCTGTTCTCGCACATGCGCGCCGTGGCGCGCGTCAAGCCGGACATCTCG GTGTTCAACATCATCCTCAACGCGTACGGGCAGCTGGACCTCGCGCGCGAGGCGGACCGG CTGTTCTGGTCCATGCGCCGGGCAGGCGTGCCGCCAAGCGTGGTGACCTACAACACCATG CTCCGTGTGTACGGCGATGCAGGGCTGTTCGGCGAGGCAGTTCACCTGTTTGACCTCATG CGCAGCACTTCAGATGGCAACGGTGGCGCTGGTAGCAGCGTCAAACCGAATGTGGTGACG TACAACACCATGATTACCATCTACGGCAAGTCGCTGGAGGACGAGAAAGCTGGAAGGTTG GTGCAGGAGATGCAGGCCATTGGCGTCCAGCCTGATGCCATCACTTACTCCACTATCTTG TCCATATGGGTGAAGGCCGGGAAGCTCGACCGCGCTGCCAGGCTGTTTGAGAAGCTGAGG GAAGCTGGCACGGAGATCGACCCAGTGCTGTACCAGACAATGGTAGTGGCCTATGAGCGT GCCGGGCTTGTCTCACAGGCCAAGCGTTTGTTGCGCGATCTGAAAGACCCGGAGGGCATC CCCAAGGAGACAGCCATTAAAATCTTGGCCAGTGCCGGTCGTCTGGAAGAGGCCGCATGG CTGTTCCGTCGTGCGGTCAACACCGGTGAGATCAAGGACTCATCGGTGCACAGAGCAATG ATGGACTTGTACGCGAAGAACCGGAGGCACCGTAATGTGATCGAGGTGTTCGATGAAATG AGGAAGTTGGGCCAGTTGCCAGACTCAGAGATCATTGCCACCGCGATGAATGCTTATGGC AAGCTGAAGGAGTTCGACAAGGCCGCGGCGCTGTACCAGGCAATGAGGGAGGCAGGTTGT GTGTTCTCAGACCGGGTGCACTTTCAGATGATTAGCCTCCTTGGCGCTCAGAAGGACTTC AAGGCGCTCGAAGTGCTGGTTGGCGAGCTAAGCCATGACCCAAGCATCGACAAGAGGGAG CTTTATCTTGTGGCTGCAGGCGTTTATGAGAGAGCGTACAAGTTTGATAAGGCATCCCAG ATTATAAGCCAGATAAGAAGCTCCAACGAATTCGATGTCCAGAAACTCAGATAA

Peptide Sequence

PEP ID	Zm00001d042978_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:185628580:185630553:-1 gene:Zm00001d042978 transcript:Zm00001d042978_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MPPTTAPAAAAALPSPSHRRLPAAKSVWLNPNLPSSHPLHQRHKSAAELQQRQHDDRTID VPALVTALSAARTAPDLAAVLATHRPVSARLLGALLSRLPDPRRGVALLDLLAPDLPAPT LLIPYNLLLRSACRAGELRLASGLLLEMRERGVTPDAFSYSTLLAALTRAGHLDHALTFL PLMEDDAVAPDLILFSNLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKS DLLRDAKRMLLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDIS VFNIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLM RSTSDGNGGAGSSVKPNVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTIL SIWVKAGKLDRAARLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLKDPEGI PKETAIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEM RKLGQLPDSEIIATAMNAYGKLKEFDKAAALYQAMREAGCVFSDRVHFQMISLLGAQKDF KALEVLVGELSHDPSIDKRELYLVAAGVYERAYKFDKASQIISQIRSSNEFDVQKLR

Transcript Sequence

Transcript ID	Zm00001d042978_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:185628580:185630553:-1 gene:Zm00001d042978 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGCCGCCCACTACAGCCCCGGCCGCTGCCGCGGCGCTCCCATCACCTTCTCACCGCAGG CTCCCCGCCGCGAAATCCGTCTGGCTGAACCCCAACCTCCCCTCTTCTCACCCCCTCCAC CAGCGCCACAAGTCCGCCGCCGAGCTCCAACAACGGCAGCACGATGACCGTACGATCGAC GTCCCGGCCCTCGTCACCGCGCTCTCGGCCGCGCGGACGGCTCCCGACCTGGCAGCCGTG CTCGCCACGCACCGACCCGTCTCCGCGCGCCTCCTCGGTGCGCTCCTCTCCCGCCTCCCC GACCCCCGCCGCGGCGTCGCGCTGCTCGACCTCCTCGCGCCGGACCTCCCCGCCCCCACG CTCCTCATCCCATATAACCTACTGCTCCGCTCTGCTTGCCGCGCTGGCGAGCTCCGCCTC GCCTCCGGCCTCCTCCTCGAGATGCGGGAGAGGGGCGTGACCCCCGACGCGTTCTCGTAC TCCACCCTCCTCGCCGCGCTCACCCGTGCGGGCCACCTCGACCACGCGCTCACCTTCCTG CCGCTCATGGAGGATGACGCCGTGGCTCCGGACCTGATCCTCTTCTCCAACCTCATTCAC CTCGCCCTCCGCGGTGGCGACGCGCCCAAGGCGCTGGCGCTGTTCTCCCGGCTGCGTGCC GCGGGGATCAGGCCCGACCTCAAGGCATACAACGCGGCCGTCGCCGCCTACTGCAAGTCC GACCTTCTCCGCGACGCCAAGCGGATGCTGCTCCACGACATGCCGGCCGACGGCGTCGCG CCCGACGCGGAGACATACTCCCCCATCCTCGCGGCGCTGGCGCGAAGGGGGCGGCACCTC GCGGCCGTGTCGCTGTTCTCGCACATGCGCGCCGTGGCGCGCGTCAAGCCGGACATCTCG GTGTTCAACATCATCCTCAACGCGTACGGGCAGCTGGACCTCGCGCGCGAGGCGGACCGG CTGTTCTGGTCCATGCGCCGGGCAGGCGTGCCGCCAAGCGTGGTGACCTACAACACCATG CTCCGTGTGTACGGCGATGCAGGGCTGTTCGGCGAGGCAGTTCACCTGTTTGACCTCATG CGCAGCACTTCAGATGGCAACGGTGGCGCTGGTAGCAGCGTCAAACCGAATGTGGTGACG TACAACACCATGATTACCATCTACGGCAAGTCGCTGGAGGACGAGAAAGCTGGAAGGTTG GTGCAGGAGATGCAGGCCATTGGCGTCCAGCCTGATGCCATCACTTACTCCACTATCTTG TCCATATGGGTGAAGGCCGGGAAGCTCGACCGCGCTGCCAGGCTGTTTGAGAAGCTGAGG GAAGCTGGCACGGAGATCGACCCAGTGCTGTACCAGACAATGGTAGTGGCCTATGAGCGT GCCGGGCTTGTCTCACAGGCCAAGCGTTTGTTGCGCGATCTGAAAGACCCGGAGGGCATC CCCAAGGAGACAGCCATTAAAATCTTGGCCAGTGCCGGTCGTCTGGAAGAGGCCGCATGG CTGTTCCGTCGTGCGGTCAACACCGGTGAGATCAAGGACTCATCGGTGCACAGAGCAATG ATGGACTTGTACGCGAAGAACCGGAGGCACCGTAATGTGATCGAGGTGTTCGATGAAATG AGGAAGTTGGGCCAGTTGCCAGACTCAGAGATCATTGCCACCGCGATGAATGCTTATGGC AAGCTGAAGGAGTTCGACAAGGCCGCGGCGCTGTACCAGGCAATGAGGGAGGCAGGTTGT GTGTTCTCAGACCGGGTGCACTTTCAGATGATTAGCCTCCTTGGCGCTCAGAAGGACTTC AAGGCGCTCGAAGTGCTGGTTGGCGAGCTAAGCCATGACCCAAGCATCGACAAGAGGGAG CTTTATCTTGTGGCTGCAGGCGTTTATGAGAGAGCGTACAAGTTTGATAAGGCATCCCAG ATTATAAGCCAGATAAGAAGCTCCAACGAATTCGATGTCCAGAAACTCAGATAA