Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042962_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:3:184999336:185011550:1 gene:Zm00001d042962 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ypt/Rab-GAP domain of gyp1p superfamily protein
Sequence

ATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGAGACGCCTATGGCTTC
GCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAGTATGCGAACATCTATAAGGAGGAG
GAAGAGGAGAGGTCCGACAGATGGAAGAATTTTCTGGATCGGCAGGCTGAGGATGGAGAA
TCATCTGGAGAGGATGCCAAGGTTGCGCCATCCAACGAGGAAGATGGAGTTGCTGCCAAG
GATGGCAGGACAGAGCCAAGACCACATAAAATCCAAATATGGTCTGAAATCAGGCCCTCT
TTGGGCCATATTAAGGAGATGATGAACTCACGCGTGAAAAAGCAATCTTCTTCTGTTAAT
GACGGGTACACGAGGGATGAACCACACCCTGGTAATTCTGAAGGGAGCAAGCCATCGGAG
GATTCAGATGATGAGTTCTATGATGTAGAGAAGGTTGATCCTAGCCAAGAAGTGCCTGCA
ACTGACATAGCCAATGCTGAGTCAGGTACAAATAGAGGTGCAGAACAAGAACATTATCCT
TGGAAAGAAGAATTAGAATGCTTAGTCCGTGATGGGCTTCCAATGGCCCTGAGAGGAGAG
CTGTGGCAAGCTTTTATTGGTATTGGAGCTCGTCGGGTCGAAGGGTACTATGAGGGCCTC
CTTGCAGCGGACAGTGAAAGTCAAGACAACAAATATCCGGGATCTCCAACTTCGGAATGT
GGTGACGGAAAACCAAAACCATCTCAAACATTTTCTTCTGAAAAATGGAAAGGGCAAATA
GAGAAGGATTTGCCTAGAACATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAAT
GCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAG
GCAATGAACTTCTTTGCTGGCTTGCTACTTCTGCTGATGCCAGAAGAGAATGCATTTTGG
GCATTGACAGGCATTATGGATGACTATTTTGATGGTTACTTCTCTGAAGAAATGATCGAA
TCTCAGGTGGATCAGCTTGTTTTAGAGGAGTTAGTCCGAGGGAGATTCCCAAAGTTAGTA
AATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCT
ATTTTTATGAACATGCTTCCCTGGGAAAGTGTGCTTCGTGTGTGGGATGTTCTTCTCTTT
GAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATGGTCCT
GCACTTGTGACAACAAAAGATGCTGGGGATGCAGTAACCCTTTTGCAGTCTTTAGCTGGT
TCCACTTTTGACAGTAGCCAGCTTGTTTTAACAGCTTGCATGGGATATCAAGCTGTAGGT
GAAGCAAGACTGCAAGAATTGAGAAATAAACACCGACCATCTGTTATCTCCTCAATGGAA
CAGAGAGCAAAAGGTCTTCGTGTCTGGAGGGATACGAACAGGCTTGCATCTAGGCTATAT
AATTTTAAGCGTGACACTGAACCATTGGTGTCGTTATCAGAAGAACAGTCAAATGACTTG
ACAGATGGCGATAAGAACCAAGAAGCCAATTGTAGTAATGTGGATGATATGTATCATGGC
CTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGGTAGTCTGGCTG
AAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCCGCTGTTCTGAGGGCTGATGAA
TTAGAGACAGCACTTATGGAGATGGTTAAGCAAGATAACAGACGCGAATTAAGTGCAAAG
GTCGAGCAATTGGAACAAGAGTTATCTGAGCTTAGGCAAGCTCTATCAGACAAGCAGGAA
CAGGAACAAGCAATGCTTCAGGTTCTGATGCGTGTAGAGCAAGAACAGAAAGTCACAGAG
GACGCCCGTATCTTTGCAGAGCAAGATGCTGCTGCTCAGAAATATGCTGCACATATACTT
CAGGAGAAGTACGAGGGAGCTATGGCTTCACTTGCTCAAATGGAGAACAGAGCAGTTATG
GCAGAAACTATGTTAGAGGCAACCATTCAGTACCAATCTAGTCAGCAGAAAGCACAGCTT
CCATCGCCCTCTCCTTCTCCAAGGACCCCAACTCGAGATGCATCACCAGGCCAAGGGAAC
CAAGATTCATCGCAGGAGTTCCAGCCTAGAAGAATAAGCTTGCTTGCCCCATTTTCTTCC
CTCGGATGGCGAGACAAGAACAAGAACGGCTCTGATGAGTCAACAAACGGTAAGCTCAAT
AATAGCACCGATCAAGGGGTTGAAACACCCAAAAAGGACGACGAAAAGAAGGCCGACTCG
CCAAAAGAGAGTGAACAGATTGTCCGAACACCGGAAAGAGACAATGAACTGAGACTAGGG
ACACCCAAGATGGATAGTGAGGTACCAAGTGTGGAAATGGCGGCAAACAGTACGAATGGG
CTGGAGGACCAGTTGGAGGAGATAAAATTGGATTGA

Peptide Sequence

PEP ID

Zm00001d042962_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:3:184999336:185011550:1 gene:Zm00001d042962 transcript:Zm00001d042962_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ypt/Rab-GAP domain of gyp1p superfamily protein
Sequence

MKAKALPFIAFEHKRDAYGFAVRPQHLQRYREYANIYKEEEEERSDRWKNFLDRQAEDGE
SSGEDAKVAPSNEEDGVAAKDGRTEPRPHKIQIWSEIRPSLGHIKEMMNSRVKKQSSSVN
DGYTRDEPHPGNSEGSKPSEDSDDEFYDVEKVDPSQEVPATDIANAESGTNRGAEQEHYP
WKEELECLVRDGLPMALRGELWQAFIGIGARRVEGYYEGLLAADSESQDNKYPGSPTSEC
GDGKPKPSQTFSSEKWKGQIEKDLPRTFPGHPALDEDGRNALRRLLTAYARHNPPVGYCQ
AMNFFAGLLLLLMPEENAFWALTGIMDDYFDGYFSEEMIESQVDQLVLEELVRGRFPKLV
NHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGP
ALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACMGYQAVGEARLQELRNKHRPSVISSME
QRAKGLRVWRDTNRLASRLYNFKRDTEPLVSLSEEQSNDLTDGDKNQEANCSNVDDMYHG
LTVNSEIDSLPDPKDQVVWLKGELCQLLEERRSAVLRADELETALMEMVKQDNRRELSAK
VEQLEQELSELRQALSDKQEQEQAMLQVLMRVEQEQKVTEDARIFAEQDAAAQKYAAHIL
QEKYEGAMASLAQMENRAVMAETMLEATIQYQSSQQKAQLPSPSPSPRTPTRDASPGQGN
QDSSQEFQPRRISLLAPFSSLGWRDKNKNGSDESTNGKLNNSTDQGVETPKKDDEKKADS
PKESEQIVRTPERDNELRLGTPKMDSEVPSVEMAANSTNGLEDQLEEIKLD

Transcript Sequence

Transcript ID

Zm00001d042962_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:184999336:185011550:1 gene:Zm00001d042962 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ypt/Rab-GAP domain of gyp1p superfamily protein
Sequence

GTCGCGGGATTCGCCGGGAACGCCCACACCACCGGCCGCAGCCGACCAGGCAGACGAGTA
GGGTGGTGGTGGTGGTAGCGGTAGCGCGGGGGCGGGGCGGCGCTGCGTGACCGACGCCAC
GGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGAGACGCCTATG
GCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAGTATGCGAACATCTATAAGG
AGGAGGAAGAGGAGAGGTCCGACAGATGGAAGAATTTTCTGGATCGGCAGGCTGAGGATG
GAGAATCATCTGGAGAGGATGCCAAGGTTGCGCCATCCAACGAGGAAGATGGAGTTGCTG
CCAAGGATGGCAGGACAGAGCCAAGACCACATAAAATCCAAATATGGTCTGAAATCAGGC
CCTCTTTGGGCCATATTAAGGAGATGATGAACTCACGCGTGAAAAAGCAATCTTCTTCTG
TTAATGACGGGTACACGAGGGATGAACCACACCCTGGTAATTCTGAAGGGAGCAAGCCAT
CGGAGGATTCAGATGATGAGTTCTATGATGTAGAGAAGGTTGATCCTAGCCAAGAAGTGC
CTGCAACTGACATAGCCAATGCTGAGTCAGGTACAAATAGAGGTGCAGAACAAGAACATT
ATCCTTGGAAAGAAGAATTAGAATGCTTAGTCCGTGATGGGCTTCCAATGGCCCTGAGAG
GAGAGCTGTGGCAAGCTTTTATTGGTATTGGAGCTCGTCGGGTCGAAGGGTACTATGAGG
GCCTCCTTGCAGCGGACAGTGAAAGTCAAGACAACAAATATCCGGGATCTCCAACTTCGG
AATGTGGTGACGGAAAACCAAAACCATCTCAAACATTTTCTTCTGAAAAATGGAAAGGGC
AAATAGAGAAGGATTTGCCTAGAACATTTCCAGGACACCCTGCACTAGATGAGGATGGCA
GAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACT
GCCAGGCAATGAACTTCTTTGCTGGCTTGCTACTTCTGCTGATGCCAGAAGAGAATGCAT
TTTGGGCATTGACAGGCATTATGGATGACTATTTTGATGGTTACTTCTCTGAAGAAATGA
TCGAATCTCAGGTGGATCAGCTTGTTTTAGAGGAGTTAGTCCGAGGGAGATTCCCAAAGT
TAGTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCC
TATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGTGCTTCGTGTGTGGGATGTTCTTC
TCTTTGAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATG
GTCCTGCACTTGTGACAACAAAAGATGCTGGGGATGCAGTAACCCTTTTGCAGTCTTTAG
CTGGTTCCACTTTTGACAGTAGCCAGCTTGTTTTAACAGCTTGCATGGGATATCAAGCTG
TAGGTGAAGCAAGACTGCAAGAATTGAGAAATAAACACCGACCATCTGTTATCTCCTCAA
TGGAACAGAGAGCAAAAGGTCTTCGTGTCTGGAGGGATACGAACAGGCTTGCATCTAGGC
TATATAATTTTAAGCGTGACACTGAACCATTGGTGTCGTTATCAGAAGAACAGTCAAATG
ACTTGACAGATGGCGATAAGAACCAAGAAGCCAATTGTAGTAATGTGGATGATATGTATC
ATGGCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGGTAGTCT
GGCTGAAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCCGCTGTTCTGAGGGCTG
ATGAATTAGAGACAGCACTTATGGAGATGGTTAAGCAAGATAACAGACGCGAATTAAGTG
CAAAGGTCGAGCAATTGGAACAAGAGTTATCTGAGCTTAGGCAAGCTCTATCAGACAAGC
AGGAACAGGAACAAGCAATGCTTCAGGTTCTGATGCGTGTAGAGCAAGAACAGAAAGTCA
CAGAGGACGCCCGTATCTTTGCAGAGCAAGATGCTGCTGCTCAGAAATATGCTGCACATA
TACTTCAGGAGAAGTACGAGGGAGCTATGGCTTCACTTGCTCAAATGGAGAACAGAGCAG
TTATGGCAGAAACTATGTTAGAGGCAACCATTCAGTACCAATCTAGTCAGCAGAAAGCAC
AGCTTCCATCGCCCTCTCCTTCTCCAAGGACCCCAACTCGAGATGCATCACCAGGCCAAG
GGAACCAAGATTCATCGCAGGAGTTCCAGCCTAGAAGAATAAGCTTGCTTGCCCCATTTT
CTTCCCTCGGATGGCGAGACAAGAACAAGAACGGCTCTGATGAGTCAACAAACGGTAAGC
TCAATAATAGCACCGATCAAGGGGTTGAAACACCCAAAAAGGACGACGAAAAGAAGGCCG
ACTCGCCAAAAGAGAGTGAACAGATTGTCCGAACACCGGAAAGAGACAATGAACTGAGAC
TAGGGACACCCAAGATGGATAGTGAGGTACCAAGTGTGGAAATGGCGGCAAACAGTACGA
ATGGGCTGGAGGACCAGTTGGAGGAGATAAAATTGGATTGATATCCTTTGGCTGGTCGCT
AAGCCGCAACATAAGGTGCCATTAAATTATGTATTGGTGTATCCATCTTCCACCTCTATT
CTTTTAGGTTTATAGATTCTTGTATAACTTGAGGAGAGAGAATGAATAAACTATGTTTGC
CCTCTTATAGGTCTGTTGATCGCCTGTAAGCTATCATAAGTACACATGAAAAAGACGTAC
CAAATAGAAGATTACCACGAAAGCAATTTTTGG