Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042922_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:3:184004406:184007904:-1 gene:Zm00001d042922 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable mediator of RNA polymerase II transcription subunit 37c
Sequence

ATGGCGAAGGGCGAGGGTCCGGCGATCGGGATCGATCTCGGCACCACCTACTCGTGCGTC
GGCGTGTGGCAGCACGACCGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACG
CCGTCCTATGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAG
GTGGCCATGAACCCCACCAACACCGTCTTCGGGTTCATTTTATCAATATTGTATGGGAGC
TCTGGCGAGAAGAACGTGCTCATCTTCGACCTTGGTGGTGGCACGTTTGACGTGTCGCTC
CTCACCATCGAGGAGGGCATCTTCGAGGTGAAGGCCACTGCGGGTGACACTCACCTTGGA
GGCGAGGATTTCGACAATCGCATGGTGAACCACTTCGTCCAAGAGTTCAAGCGCAAGCAT
AAGAAGGACATCAGCGGCAACCCTCGTGCACTGCGCCGGCTGCGCACGGCGTGCGAGCGC
GCCAAGCGCACGCTGTCATCGACCGCCCAGACGACCATTGAGATCGACTCCTTGTTCGAG
GGCATCGACTTCTACTCTACAATCACCAGGGCTCGCTTTGAGGAGCTCAACATGGACTTG
TTCCGCAAGTGCATGGAACCTGTGGAGAAGTGCCTGCGCGACGCCAAGATGGACAAGAGC
AGCGTGCACGACGTCGTGCTCGTCGGTGGCTCCACCCGCATTCCCAAGGTGCAGCAGCTG
CTGCAGGATTTCTTCAACGGCAAAGAACTCTGCAAGAGCATCAACCCCGACGAGGCTGTG
GCGTACGGCGCGGCTGTACAGGCCGCCATCCTCAGTGGCGAGGGCAACGAGAAGGTGCAG
GACCTGCTCCTACTCGACGTCACGCCACTGTCTCTCGGCCTGGAGACTGCAGGTGGCGTC
ATGACGGTGCTTATCCCGAGGAACACCACAATCCCGACCAAGAAGGAGCAGGTCTTCTCG
ACGTACTCCGACAATCAGCCGGGCGTCCTGATACAGGTGTACGAGGGTGAGCGCGCGAGG
ACCAAGGACAACAACCTCCTCGGCAAGTTCGAGCTCTCGGGCATCCCTCCTGCTCCCCGC
GGCGTGCCCCAGATCACCGTCACCTTCGACATCGACGCCAATGGCATCCTCAACGTCTCT
GCTGAGGACAAGACCACCGGCCAGAAGAACAAGATCACGATCACTAACGACAAGGGCCGG
CTTAGCAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCTGAGAAGTACAAGGCCGAGGAC
GAGGAGGTCAAGAAGAAGGTGGACGCTAAGAACACGCTCGAGAACTATGCCTATAACATG
AGGAACACCATCAAGGATGACAAGATCGCCTCCAAGCTCTCGGCAGATGACAAGAAAAAG
ATCGAGGACGCCGTCGATAGCGCCACCAGCTGGCTGGACAGCAACCAGCTAGCTGAGGTG
GACGAGTTCGAAGACAAGATGAAGGAGCTCGAGGGCATCTGCAACCCCATCATCGCCAAG
ATGTACCAAGGCGCTGGCGCGGGCATGGGCGATGCGGCTGGCATGGACGAGGATGCCCCG
TCTGGTGGGAGCGGTGCTGGTCCCAAGATCGAAGAGGTCGATTAA

Peptide Sequence

PEP ID

Zm00001d042922_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:3:184004406:184007904:-1 gene:Zm00001d042922 transcript:Zm00001d042922_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable mediator of RNA polymerase II transcription subunit 37c
Sequence

MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ
VAMNPTNTVFGFILSILYGSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG
GEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFE
GIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQL
LQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGV
MTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPR
GVPQITVTFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAED
EEVKKKVDAKNTLENYAYNMRNTIKDDKIASKLSADDKKKIEDAVDSATSWLDSNQLAEV
DEFEDKMKELEGICNPIIAKMYQGAGAGMGDAAGMDEDAPSGGSGAGPKIEEVD

Transcript Sequence

Transcript ID

Zm00001d042922_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:184004406:184007904:-1 gene:Zm00001d042922 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable mediator of RNA polymerase II transcription subunit 37c
Sequence

GGGGCCAACGTGTTCCCACTTGTCACGCCGCTATTAGCCTGTCTCCCGAACCGCACCATC
CAGACCCTTCCGGAACGCCCCTCCGATCTGAATTCAACGGTAGGTCTCCGCCGCGCTCGA
ACGTTCCCGAAACCACGTCCACACCACGATAAAAACCCACGCGCTGCCTCCTCCCTTCCT
CAACTTCAACTATCATTGCAAAAGCAAAGCACGCAATCCAATTTCCCTCCATTTCTCTAG
ATCTCGAGTTGCTCTGCTACTTCTTTTAGATTCCTTCTTTCGTTCGGGAGAGCGATTCTC
TAGCTGGTGGCAATGGCGAAGGGCGAGGGTCCGGCGATCGGGATCGATCTCGGCACCACC
TACTCGTGCGTCGGCGTGTGGCAGCACGACCGGGTGGAGATCATCGCCAACGACCAGGGC
AACCGCACCACGCCGTCCTATGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCC
GCCAAGAACCAGGTGGCCATGAACCCCACCAACACCGTCTTCGGGTTCATTTTATCAATA
TTGTATGGGAGCTCTGGCGAGAAGAACGTGCTCATCTTCGACCTTGGTGGTGGCACGTTT
GACGTGTCGCTCCTCACCATCGAGGAGGGCATCTTCGAGGTGAAGGCCACTGCGGGTGAC
ACTCACCTTGGAGGCGAGGATTTCGACAATCGCATGGTGAACCACTTCGTCCAAGAGTTC
AAGCGCAAGCATAAGAAGGACATCAGCGGCAACCCTCGTGCACTGCGCCGGCTGCGCACG
GCGTGCGAGCGCGCCAAGCGCACGCTGTCATCGACCGCCCAGACGACCATTGAGATCGAC
TCCTTGTTCGAGGGCATCGACTTCTACTCTACAATCACCAGGGCTCGCTTTGAGGAGCTC
AACATGGACTTGTTCCGCAAGTGCATGGAACCTGTGGAGAAGTGCCTGCGCGACGCCAAG
ATGGACAAGAGCAGCGTGCACGACGTCGTGCTCGTCGGTGGCTCCACCCGCATTCCCAAG
GTGCAGCAGCTGCTGCAGGATTTCTTCAACGGCAAAGAACTCTGCAAGAGCATCAACCCC
GACGAGGCTGTGGCGTACGGCGCGGCTGTACAGGCCGCCATCCTCAGTGGCGAGGGCAAC
GAGAAGGTGCAGGACCTGCTCCTACTCGACGTCACGCCACTGTCTCTCGGCCTGGAGACT
GCAGGTGGCGTCATGACGGTGCTTATCCCGAGGAACACCACAATCCCGACCAAGAAGGAG
CAGGTCTTCTCGACGTACTCCGACAATCAGCCGGGCGTCCTGATACAGGTGTACGAGGGT
GAGCGCGCGAGGACCAAGGACAACAACCTCCTCGGCAAGTTCGAGCTCTCGGGCATCCCT
CCTGCTCCCCGCGGCGTGCCCCAGATCACCGTCACCTTCGACATCGACGCCAATGGCATC
CTCAACGTCTCTGCTGAGGACAAGACCACCGGCCAGAAGAACAAGATCACGATCACTAAC
GACAAGGGCCGGCTTAGCAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCTGAGAAGTAC
AAGGCCGAGGACGAGGAGGTCAAGAAGAAGGTGGACGCTAAGAACACGCTCGAGAACTAT
GCCTATAACATGAGGAACACCATCAAGGATGACAAGATCGCCTCCAAGCTCTCGGCAGAT
GACAAGAAAAAGATCGAGGACGCCGTCGATAGCGCCACCAGCTGGCTGGACAGCAACCAG
CTAGCTGAGGTGGACGAGTTCGAAGACAAGATGAAGGAGCTCGAGGGCATCTGCAACCCC
ATCATCGCCAAGATGTACCAAGGCGCTGGCGCGGGCATGGGCGATGCGGCTGGCATGGAC
GAGGATGCCCCGTCTGGTGGGAGCGGTGCTGGTCCCAAGATCGAAGAGGTCGATTAA