Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042812_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:180955995:180958405:-1 gene:Zm00001d042812 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

ATGGGCATCCAGGTCGCGGCGGTCGTGATCCCGCCGCCCTGCTCTTCTCCTTCCTCCTCC
TCCTCCTCTCCGGCGTCGCCTTCGTCCTCGGCCATTGCCACGTCGCCGCAGCATGCCGTT
CTTGGCGCCAGGCTGGCGAGGAGCCAGTCGTCGCTGGCTTGCTGGAACGCCGCCGGTCTC
GGCCGGCGGCGCGGCGGGGAGCACACGATCAGGCGCGCTCTCAGCGCGAGCATCGACAGC
GTCGGGAGCGACGGCGGGGACGACGAGGAGTTCTCGAGGAGGATCCAGGAGCTCGCGGTG
GGTCAGCACCCGGGCGCCGGCGGCTGCGGGTGGCCGGCGAGCGTGGAGCGGAGCGCGAGC
AGCGTCGGGCTGCCGCTGTCCCTGCGGATGCTCAAACGGAGGAAGCAGCAGCAGCTGGAG
CAGGGGCGGTGGGACGAGCGGCTGGTCGACAGCGCCGGCGAGTCCGCGCGCGCCGCGGTG
GGGCGCGCCTTCTCCTCGATGGTGCTCATCATCCGGGAGCTCCAGAGCTTCACGCTGCAG
ATGCGGGAGACGCTCTTGTACGAGGACCTGCAGGGCGTCCTGGCGCGCGTCCACGCCGAG
ATGCACGCCTCCTTCGTCTGGCTCTTCCAGCACATCTTCTCCGGCACCCCGGCCCTTATG
GTCTCCCTCATGCTGCTCCTCGCCAACTTCACCGTCTACTCCATGGGCGACAGCGTCGCG
GCCGCTGCCAGCCTCCTCCCACCGCACGCAGCCGTGGCGGCTGTGGAGATGGTGGACACC
CAGCAACCGGAGCAATCCCATTCCCAGCAGCAGCGGTTCGACACCCCCGCGCTCAAGACG
TTCTCCACTGGCCGCACGGCCTCGGTGGGCGGAAACGGCGGCGGGGGCGGCAAGGTGCGG
CCGGTTGCCGGCGCCACGGGCGACGGCCAGTCGGACGAGTCGTCGTCGTACCGACAAAGC
GGAGCTGTGCTGCCGCAGGACGTGTCGCAGGCGACGCCCCTGGGCGCGGGCGCGGGCGCG
GGGTCGGAGGCGTCCGTGTCCGACTCAATGGCCGTGGAGGAGGCACAGCAGACTGTACAG
GACGAGCTGGTCATCTGGAAACGGATATCCGACGAAGCCATCAGGATGCAGGCGAGCGTG
CGTGCAGAGGAGCTGATGGACCCGGAAATCCTGGAGCAGCTCGTCGCGCCCGTGGAGGCA
CCGAAGCCAGACGTGGCCTATCCGTCGGAGGAGCACGTGGCCACGGCGCAGAGATACGAG
CAGGCCGTGTCCGAGGAGCCCAACAGCTCGCTGCTCCTGGCGAACTTTGCGCAGTTCCTG
TACCAGGTGCAGGGCGACCTCGACAGGGCGGAGCACTTCTTCAGGAGGGCGGTGCGCGCG
GAGCCGGCGGACGCGGAGGCGCTGGGGCGGTACGCGGCGTTCCTGTGGCAGGCGCGCAAC
GACCTCGCGGCCGCGGAGGAGACGTACCAGGAGGCCATCGCCGCCGACCCCGGCAACGCG
CACCACGCGGCAGCCTACGCGCACTTCCTGTGGAACACGGGCGGTGAGGACACATGCTAC
CCGCTCGACTGA

Peptide Sequence

PEP ID

Zm00001d042812_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:180955995:180958405:-1 gene:Zm00001d042812 transcript:Zm00001d042812_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

MGIQVAAVVIPPPCSSPSSSSSSPASPSSSAIATSPQHAVLGARLARSQSSLACWNAAGL
GRRRGGEHTIRRALSASIDSVGSDGGDDEEFSRRIQELAVGQHPGAGGCGWPASVERSAS
SVGLPLSLRMLKRRKQQQLEQGRWDERLVDSAGESARAAVGRAFSSMVLIIRELQSFTLQ
MRETLLYEDLQGVLARVHAEMHASFVWLFQHIFSGTPALMVSLMLLLANFTVYSMGDSVA
AAASLLPPHAAVAAVEMVDTQQPEQSHSQQQRFDTPALKTFSTGRTASVGGNGGGGGKVR
PVAGATGDGQSDESSSYRQSGAVLPQDVSQATPLGAGAGAGSEASVSDSMAVEEAQQTVQ
DELVIWKRISDEAIRMQASVRAEELMDPEILEQLVAPVEAPKPDVAYPSEEHVATAQRYE
QAVSEEPNSSLLLANFAQFLYQVQGDLDRAEHFFRRAVRAEPADAEALGRYAAFLWQARN
DLAAAEETYQEAIAADPGNAHHAAAYAHFLWNTGGEDTCYPLD

Transcript Sequence

Transcript ID

Zm00001d042812_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:180955995:180958405:-1 gene:Zm00001d042812 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

GCAGCACTAGCACTGGTACCAGCAACCTTCACGAGCTGCGTGGTGAGGTTGACCAGGACT
CCTTCCGGATCCTGAAATAAGGCCACCGCTCGTTTCCTCTCCACCTCCCTCCTCCTTCAC
TCCCTCCCCTTGCGTTTAGCCTCCCGCTGTTGTGGAGCCGCGGGCCATTCCCAACCATCG
TTGCGGTGGTGGCCGGTATTGGCCGAGACCCATGGGCATCCAGGTCGCGGCGGTCGTGAT
CCCGCCGCCCTGCTCTTCTCCTTCCTCCTCCTCCTCCTCTCCGGCGTCGCCTTCGTCCTC
GGCCATTGCCACGTCGCCGCAGCATGCCGTTCTTGGCGCCAGGCTGGCGAGGAGCCAGTC
GTCGCTGGCTTGCTGGAACGCCGCCGGTCTCGGCCGGCGGCGCGGCGGGGAGCACACGAT
CAGGCGCGCTCTCAGCGCGAGCATCGACAGCGTCGGGAGCGACGGCGGGGACGACGAGGA
GTTCTCGAGGAGGATCCAGGAGCTCGCGGTGGGTCAGCACCCGGGCGCCGGCGGCTGCGG
GTGGCCGGCGAGCGTGGAGCGGAGCGCGAGCAGCGTCGGGCTGCCGCTGTCCCTGCGGAT
GCTCAAACGGAGGAAGCAGCAGCAGCTGGAGCAGGGGCGGTGGGACGAGCGGCTGGTCGA
CAGCGCCGGCGAGTCCGCGCGCGCCGCGGTGGGGCGCGCCTTCTCCTCGATGGTGCTCAT
CATCCGGGAGCTCCAGAGCTTCACGCTGCAGATGCGGGAGACGCTCTTGTACGAGGACCT
GCAGGGCGTCCTGGCGCGCGTCCACGCCGAGATGCACGCCTCCTTCGTCTGGCTCTTCCA
GCACATCTTCTCCGGCACCCCGGCCCTTATGGTCTCCCTCATGCTGCTCCTCGCCAACTT
CACCGTCTACTCCATGGGCGACAGCGTCGCGGCCGCTGCCAGCCTCCTCCCACCGCACGC
AGCCGTGGCGGCTGTGGAGATGGTGGACACCCAGCAACCGGAGCAATCCCATTCCCAGCA
GCAGCGGTTCGACACCCCCGCGCTCAAGACGTTCTCCACTGGCCGCACGGCCTCGGTGGG
CGGAAACGGCGGCGGGGGCGGCAAGGTGCGGCCGGTTGCCGGCGCCACGGGCGACGGCCA
GTCGGACGAGTCGTCGTCGTACCGACAAAGCGGAGCTGTGCTGCCGCAGGACGTGTCGCA
GGCGACGCCCCTGGGCGCGGGCGCGGGCGCGGGGTCGGAGGCGTCCGTGTCCGACTCAAT
GGCCGTGGAGGAGGCACAGCAGACTGTACAGGACGAGCTGGTCATCTGGAAACGGATATC
CGACGAAGCCATCAGGATGCAGGCGAGCGTGCGTGCAGAGGAGCTGATGGACCCGGAAAT
CCTGGAGCAGCTCGTCGCGCCCGTGGAGGCACCGAAGCCAGACGTGGCCTATCCGTCGGA
GGAGCACGTGGCCACGGCGCAGAGATACGAGCAGGCCGTGTCCGAGGAGCCCAACAGCTC
GCTGCTCCTGGCGAACTTTGCGCAGTTCCTGTACCAGGTGCAGGGCGACCTCGACAGGGC
GGAGCACTTCTTCAGGAGGGCGGTGCGCGCGGAGCCGGCGGACGCGGAGGCGCTGGGGCG
GTACGCGGCGTTCCTGTGGCAGGCGCGCAACGACCTCGCGGCCGCGGAGGAGACGTACCA
GGAGGCCATCGCCGCCGACCCCGGCAACGCGCACCACGCGGCAGCCTACGCGCACTTCCT
GTGGAACACGGGCGGTGAGGACACATGCTACCCGCTCGACTGATGCATGCGACGCCGCTA
CCGTCCAGCACAGTTCATCGGTGCCTCCCATAGAAAAAACTGAAACAAAAAAGAAAGAGA
AAAGAACACTCCGCCGCTCCACTGCCTCGGCAAGTCCACGCTCTTTCTCACGGCATGTGC
TTGAGCGGCCACCCGGGGCAGCAGTACTAGACTACAAGTGAAGCTGAAGCTTATACACTT
CGCGTTACAGGAACCGTTGGTTCGCTTTAGTGTCTAGTCTAGGCATGTTCTTTCTCTTCC
CTGTGGTTGCTCGTTCTGGGCAATGGCCGACGGAAATCCGCGGCTCGCTGCTGCTTCCCG
ATCCGGAAACCCGGCGACTGCGAGTTGAGAGCCCGGCCGGGAACGGCGGCAACGCTCGGT
TGTCGGTGGGCCCGTCTGTCCACTTGGCGTCGCATGGATGTTTTCTACTGGCACTTTTGC
ACGGTATGCCGCTTTGTTCAGTGGAGCAGAAAAGTATATATATATATACTTATATAC