Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042802_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:180309672:180319833:1 gene:Zm00001d042802 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable 3-deoxy-D-manno-octulosonic acid transferase mitochondrial
Sequence

ATGCGGCCGACCCGCGCGGCGTCGCGTGGGGGATGGGCGTTATACGAGCTGTACAGGACA
ACGAGCCGCGTGGCGGCGCCGGCAGTGCTATTGTGGCGGCGACTGCAAGGGCTGGAGCAC
CCGACGCGGTGGCCGGAGCGGCTAGGACGGCCGTCCGCGGCGCGGCCTCGGCCGGGCTCT
CCGCTCGTGTGGTTTCATGCCGTATCCCTTGGCGAGGGAATGGCCGCGCTTCCCATTGTT
CGCCACTGCGTCCGCCTCCGTCCCGGCCTCCCCGTGCTTTTCACCACCACCACCCTCTCC
TCGTCCGAAGTTATCATGGATCTACTCCCTGATGGTGTCATATATCAGTTTGCTCCTCTT
GACTGTCCTACTGCAATAGATAGTTTTATTGGATACTGGAAGCCAAGTTTGGTACTTCTT
CTGGAAAGTGAACTCTGGCCAAACCTCATCATGTCTGCAGCAGCAAAAGGGATTGCAGTG
GCTCTTTTAAATGCACGCATATCATTGAAATCCTTCAACCACTGGTCGATGCCTCTAATG
TTCCCATTAGTTTCTTTGATGCTCTCTAAACTATCACTTGTTGTCCCATTGGTAAGTACC
CATGGCAATGCTGACGTTATTTTTATGTACATCTATTACTGCTGCCATTATTCGTTTCTT
ATCATTACAGAGTACTATTCAAGCTGTTCGTTTTCAGCTGCTACATACACCACCAGGAAT
CATACATTTTGCTGGAGATTTAAAATATGGTATACTCAAGTTTTGTCTAGTCTTTCCTGA

Peptide Sequence

PEP ID

Zm00001d042802_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:180309672:180319833:1 gene:Zm00001d042802 transcript:Zm00001d042802_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable 3-deoxy-D-manno-octulosonic acid transferase mitochondrial
Sequence

MRPTRAASRGGWALYELYRTTSRVAAPAVLLWRRLQGLEHPTRWPERLGRPSAARPRPGS
PLVWFHAVSLGEGMAALPIVRHCVRLRPGLPVLFTTTTLSSSEVIMDLLPDGVIYQFAPL
DCPTAIDSFIGYWKPSLVLLLESELWPNLIMSAAAKGIAVALLNARISLKSFNHWSMPLM
FPLVSLMLSKLSLVVPLVSTHGNADVIFMYIYYCCHYSFLIITEYYSSCSFSAATYTTRN
HTFCWRFKIWYTQVLSSLS

Transcript Sequence

Transcript ID

Zm00001d042802_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:180309672:180319833:1 gene:Zm00001d042802 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable 3-deoxy-D-manno-octulosonic acid transferase mitochondrial
Sequence

GCCTCTGCCATCCCCGTTGCCAAAACAACTCTTCCTTCGTTCAGTGTCGAACTATCGATG
CGGCCGACCCGCGCGGCGTCGCGTGGGGGATGGGCGTTATACGAGCTGTACAGGACAACG
AGCCGCGTGGCGGCGCCGGCAGTGCTATTGTGGCGGCGACTGCAAGGGCTGGAGCACCCG
ACGCGGTGGCCGGAGCGGCTAGGACGGCCGTCCGCGGCGCGGCCTCGGCCGGGCTCTCCG
CTCGTGTGGTTTCATGCCGTATCCCTTGGCGAGGGAATGGCCGCGCTTCCCATTGTTCGC
CACTGCGTCCGCCTCCGTCCCGGCCTCCCCGTGCTTTTCACCACCACCACCCTCTCCTCG
TCCGAAGTTATCATGGATCTACTCCCTGATGGTGTCATATATCAGTTTGCTCCTCTTGAC
TGTCCTACTGCAATAGATAGTTTTATTGGATACTGGAAGCCAAGTTTGGTACTTCTTCTG
GAAAGTGAACTCTGGCCAAACCTCATCATGTCTGCAGCAGCAAAAGGGATTGCAGTGGCT
CTTTTAAATGCACGCATATCATTGAAATCCTTCAACCACTGGTCGATGCCTCTAATGTTC
CCATTAGTTTCTTTGATGCTCTCTAAACTATCACTTGTTGTCCCATTGGTAAGTACCCAT
GGCAATGCTGACGTTATTTTTATGTACATCTATTACTGCTGCCATTATTCGTTTCTTATC
ATTACAGAGTACTATTCAAGCTGTTCGTTTTCAGCTGCTACATACACCACCAGGAATCAT
ACATTTTGCTGGAGATTTAAAATATGGTATACTCAAGTTTTGTCTAGTCTTTCCTGAGAA
TAGATTTTAAGTGATCATATGAGTGATTTAGTTTTAAAGATTGTCTTGGGAGCTTGAAAG
ATAACCAGGTTTACAAATCAAATGATTTATTAGATGATTCATGTAATTCACATAGCTGTT
GGAGATGTTAATACCGGGGAGAATCAGGTCAAGGAAATAAAAGATTTGCAACGGCAGTTT
AGCAATAGGCCCCTCTGGATGGCTGCTTCTATTCACAGAGGTGAAGAAGAAGGTAAGAAC
TCAGGATCTGCACCTCTTGCTGATTTCTGGACTAATAAAATGTATTATATCACTTATTCA
CTTCAGTTCCAGTAATCTGTAAAAATAACTGTTAGCATTTCACATTTTCATAATAACGGT
TACTCCTGCTATCCCTAATCTGTGTTGACTTCTTCGAGTTCTCTAAGAACAACTTTGATT
ACCACTCCTGCAACCGTTGATTTCTGAAAATGGTGTTAGAATCTTATACCAAGAATAACA
CTTTCAATGGCAGATATATGATGTCATTACATAATGGTGAGGATTAAAAGTTTAATTTAC
ATTTAATTAAGATAGTTAAATAGCGTATATTTATAGATTGTCATACTAATGGAATATTTG
TTCAAGATATACAGGAGTACTGTATCAATTCTTCTATATCCTCAAGCTTGGAATAAATCA
ATACTAAAAGTGTCTTTGTTTTAGAGAATCACCTCTGTCATAGTTTCATTCATGTAGTTT
TATCCCCCCCCCCCCTGAACAATATTCATGTGATTTCTTATGAATGATCTTCTGTCATAT
CATTATTCTGCCTCATTTCTTGTATTTCTGTTTGTACTCTGATCAGGAAAAATGGAGTGG
CTTTTGTGAAAATACATCTCAGTTATTTATTAATCATTTTCACATTTTCAGTATGGAGTG
ACTTGGAGATATTACATTCCTGACTTATTATTCTTGCGTTCTCAACATGAAGGGAATGAT
TTCAGTTTTTTCACAAGCCATCTTGATTTTTTGCTTTATTTTTTCAGTCATCCTCCGCAT
TCATGAAGAGTTGGTCAACGTGTATCCCGTTCTACTACTAATTCTTGTGCCAAGACATCC
TGAAGACTGTAAGAATATTTCCTTGGCACTAAAGAAACAGAAGGTCAATTTTGTGCTGAG
GTCAACTAGGGAAGTGGTCTCTTCAATCACTAGGGTATATATGGTTGATACTTTAGGTTT
GTGAACATCTACTTCTTAAAGTTGATGTACTTCTGCAAATTATGTGTGCCATATTTTAAC
TCCCTAGTCCCTCCTCCATAGTCTATTCTGAAATAGTGACCATATTTTGATCAAGAAAAA
GCATGCAAAATAGATTTTGGCCTTTAATTTCTCTTGTTACAATGTGTTGTCATTTGCTAA
AGAATCAACACCATTGCAATAAGCACTTCAAGTCTTGAAATACAAATTTATTGATGCAAG
TTTTATGTCCTAAACTTGCACATAGTTTGAACAATTGTGAATTGTTGGTCAAAGTTTGTA
AAGTTTGGCCTTTTCTTGTAGACAATATGCTTATCATTCTGAGACACATGGAGCATTAGC
TAACAGCATAAAATACCATGAAAAACAGGGGAATTAAGAATGCTTTACAGGGTCACCCCA
ATTGCAGTTGTTGGTGGTTCATTTCTACCTGGCTTAGCCGGCCATAATTTTTCTGAGGCT
GCTGCCGCTGGTTGTGCTGTTATGACTGGTGAGTCAAAGGCATCGGCATACTTTATGTTT
GACATTTCTTTGTGAAAAGTCACAATATTTGTTGTTCGTAAAGTGAACTCTGGCATGCAG
GACCCCACGTTGGACACTTCTACCATATGCTGGTCGAAATGTGGCAAATAAATCCTTTAG
CTGTCAAGCAGGTGTCAGGAGAATTTGAACTGCTGCAAACACTAAAAGAACTGCTTGGTG
ATGCCAGCACTCTGGGAGCACGTCAAAGAGCTGCAAAAGATGCATTTTCGATTATGTCAG
ATGGAGTTGTGAACCGTGTATGGGATTTAGTCTGCAGGCTGGGCATTGATTCCCAAACAA
ATACGTTGAGCAGTTGACTTAGCTGAGGCTTATTCTTGTAATCTCTGTGGGACTGTAGGA
GTGGAAATGCACAGGGAGACTGAAACCAAAAACCGGCGATTGTGGCATGCTGGCGACCTG
GTGAGTGGTGAGTGGTGACAAAGGACTAAGCTCACATGATAGAACATATATCCACGTCAT
TTGCTCGACTTGCTCCTGTCGGAAATTTAGATATATTCCATAAAAATCCTTTGAGATGTC
TGTCATCTTTTCATTTCCTTGTAGCATGGATATGATATATTTTGTCATTCCTTAGTGCCA
GCCAGCAGATGATGTTTTGCAGTGCCTTTTCCTTTGTTAAATTGGCACATTCAAGGCTCC
AGGAATTTCAAGGGCCATGCCAATTTTAGGGTTAGATGTGAACTGTTAAATGCATATGAC
ATGCTTTTTCAGGCGTGATATGTGTGATTGATGTTCTTTTCTATCTTGGCAAAGTACAGT
TTTGGGG