Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042793_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:3:179879845:179900348:1 gene:Zm00001d042793 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ATGAATGATGGATCTGTTTCAGGCGCTGATGTTGAATTAGGGAAAGAGACAACTTGTCAG
ACTGCTTCATTTGGCTGCAGTTTGGACCACACTGCTTGCACAGAGTTTAATGCCAAGTTA
TGTATTGTTGCAGTTGATGCAGCATTGCCACCTATTGACAAACTGACCTGTTCACCTGGT
ACTGTATCAGGAGATGTGTGTACAGCCCCAACTCTAACAACTGCAATCTGTACAAAACCT
AAGAGACCACGGGGGAGACCTCGAAAGTATCCAGTTCAAATCAATGGTAGATCTGTTTCA
GGCACTGTTGCTGAATTAGGACAAGAGTCAACTTGTCAGCCAGTTTCATTTGGCCACACT
GTTTGCACAGAGTTTAATGCTAATTTAAGTATTGTTCCAGTTGATGCAGCATTGCCAATT
GTCGACAAACTGTGCAGTTCATCTGGTACTGTAGTAAAAGAAAGTGTGTGTACCGAACCA
TCTCCAGCAACTGCAACTCGTAAGCAACCAAAGAGAACACGGGGGATGCCTCGAAAGTAT
TCAGACACTATGATTGACCTGGGGAAAGATACAACTGGTCATCCTGTTTTATTTGGACGC
AGTATGGATCACACTGCTTGCACAGAGTCTAACTCTAGTTTTAGCATTGTTGCAGTTGAT
GCATCATCACTGTTTGCATCTTCATCTACTGCAACTTGTGATGATAAGTCAAAAGGTCAG
AGCATTAGAGGGAAAGATAAGAAGAAAACAATTTCTAATGCTCTATATTGCCCTGTGGTT
TCTGGTGTTGAATCACAGAGCATTTGTTCCACAGAAATTCTTCCAAATGATCCTGCAGTC
TCTGTTGAGAATGCTTTGCCATCTGCACAGAACACGGTATCAATGAATGAGCTTTGTTCG
GCTAGCTTGTTAAACCGTGAGGGTAATGCGTGTAAAAGTGCTCTTTCAGATGATTCTGAA
CTGCCTATCCACATTTCACCTAAATCAAGTAATAAAAGAGAGTCAAGTGGCAGGAGGGGA
AGAGGAAGGCCTAAAACGATACCACTTTCTGCTGGAACTGGTCATTTTGTGGCTTCTGTT
GCCAGTCTCCCAAAGACAACCTGTGTACTGACTAGTTCAAGCAATCTCACGTCGTTGAAC
AAGAGTGGTGGCAAATTTATAGTAAGTAGCGTTAGTTCATGTGGCTGTGATGTTGAGAAA
TGCAGTGTTCATTCAGGTGTTTTGTTGTCTGATGATGCACCACCAGCACATGGCTTACAA
AATACAAATTGTAAGGAAGAATCGAATACCAAAATAGGAAAAGCGGGATCTAGAAATAAG
CCTGTTGCAGTTGAGCACAATCATTTTACTGATCTTAATGTAAAAGAACAAAAAGTGCAG
ACAACTCCAATGTCAGGTGATCCTGTGATCTTGGTTGAAAATTGTATGGAAGGACAAGGC
CCCAGAAAGGCTGGGGGGCAACTTCAAAGGATACCTGCTTCAAACAAGAGTAGTGGCGCA
TCTGTTGGTGGTGGAACATATAAAATAGAGACATTATCCACACCAATGACTAAAGGATCA
TCTAAAAATAATGACATGGCTTATGGGGCTGGTTTGAATCAGTCTCAGAATGCAATTGTT
GGTTGTGAAGGCATGGAAGTTATTGAAAGCAACACTGCCAATTATACTTCTCATTGTAAT
GAAAATGCACGAGCAAATCAAGTTGCACCCAGTTTCAAGAACAGTGATAGGGTCATTGAT
GAAACGGAAGCTGCGGAACTTGGGCCACTCAAGGAACCAAGGGAAGATGACAATTTGTTT
ACTTGTGTAAACTCAAACTCAGCTTCAATTACAAGTGACATTGCTCAACCAAGAGTTGTC
TTGTGTTTAGCTCACAACGGCAAAGTCGCTTGGGACATCAAATGGAAGCCTCCTTTACTA
AGTCAACCTGAACAGAAATCACGACTTGGTTTTCTTGCAGTATTGTTGGGGAATGGCGCT
CTTGAAGTGTGGGAAGTTCCATCACCATGTATGATCCAGAAAATATATTCCCCCTCTAAG
GTGGAGGGTTCTGACCCTCGTTTTCTAAAGCTCCAACCTGTATTTAGGTGTGTCAAAGTG
AAGTGCAGGAACAGGCAAAGGTACTGTGGCTTCAAAGTTTTAGCATGTGATTGA

Peptide Sequence

PEP ID

Zm00001d042793_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:3:179879845:179900348:1 gene:Zm00001d042793 transcript:Zm00001d042793_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

MNDGSVSGADVELGKETTCQTASFGCSLDHTACTEFNAKLCIVAVDAALPPIDKLTCSPG
TVSGDVCTAPTLTTAICTKPKRPRGRPRKYPVQINGRSVSGTVAELGQESTCQPVSFGHT
VCTEFNANLSIVPVDAALPIVDKLCSSSGTVVKESVCTEPSPATATRKQPKRTRGMPRKY
SDTMIDLGKDTTGHPVLFGRSMDHTACTESNSSFSIVAVDASSLFASSSTATCDDKSKGQ
SIRGKDKKKTISNALYCPVVSGVESQSICSTEILPNDPAVSVENALPSAQNTVSMNELCS
ASLLNREGNACKSALSDDSELPIHISPKSSNKRESSGRRGRGRPKTIPLSAGTGHFVASV
ASLPKTTCVLTSSSNLTSLNKSGGKFIVSSVSSCGCDVEKCSVHSGVLLSDDAPPAHGLQ
NTNCKEESNTKIGKAGSRNKPVAVEHNHFTDLNVKEQKVQTTPMSGDPVILVENCMEGQG
PRKAGGQLQRIPASNKSSGASVGGGTYKIETLSTPMTKGSSKNNDMAYGAGLNQSQNAIV
GCEGMEVIESNTANYTSHCNENARANQVAPSFKNSDRVIDETEAAELGPLKEPREDDNLF
TCVNSNSASITSDIAQPRVVLCLAHNGKVAWDIKWKPPLLSQPEQKSRLGFLAVLLGNGA
LEVWEVPSPCMIQKIYSPSKVEGSDPRFLKLQPVFRCVKVKCRNRQRYCGFKVLACD

Transcript Sequence

Transcript ID

Zm00001d042793_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:179879845:179900348:1 gene:Zm00001d042793 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ATATCCAATTCCAATGAATGATGGATCTGTTTCAGGCGCTGATGTTGAATTAGGGAAAGA
GACAACTTGTCAGACTGCTTCATTTGGCTGCAGTTTGGACCACACTGCTTGCACAGAGTT
TAATGCCAAGTTATGTATTGTTGCAGTTGATGCAGCATTGCCACCTATTGACAAACTGAC
CTGTTCACCTGGTACTGTATCAGGAGATGTGTGTACAGCCCCAACTCTAACAACTGCAAT
CTGTACAAAACCTAAGAGACCACGGGGGAGACCTCGAAAGTATCCAGTTCAAATCAATGG
TAGATCTGTTTCAGGCACTGTTGCTGAATTAGGACAAGAGTCAACTTGTCAGCCAGTTTC
ATTTGGCCACACTGTTTGCACAGAGTTTAATGCTAATTTAAGTATTGTTCCAGTTGATGC
AGCATTGCCAATTGTCGACAAACTGTGCAGTTCATCTGGTACTGTAGTAAAAGAAAGTGT
GTGTACCGAACCATCTCCAGCAACTGCAACTCGTAAGCAACCAAAGAGAACACGGGGGAT
GCCTCGAAAGTATTCAGACACTATGATTGACCTGGGGAAAGATACAACTGGTCATCCTGT
TTTATTTGGACGCAGTATGGATCACACTGCTTGCACAGAGTCTAACTCTAGTTTTAGCAT
TGTTGCAGTTGATGCATCATCACTGTTTGCATCTTCATCTACTGCAACTTGTGATGATAA
GTCAAAAGGTCAGAGCATTAGAGGGAAAGATAAGAAGAAAACAATTTCTAATGCTCTATA
TTGCCCTGTGGTTTCTGGTGTTGAATCACAGAGCATTTGTTCCACAGAAATTCTTCCAAA
TGATCCTGCAGTCTCTGTTGAGAATGCTTTGCCATCTGCACAGAACACGGTATCAATGAA
TGAGCTTTGTTCGGCTAGCTTGTTAAACCGTGAGGGTAATGCGTGTAAAAGTGCTCTTTC
AGATGATTCTGAACTGCCTATCCACATTTCACCTAAATCAAGTAATAAAAGAGAGTCAAG
TGGCAGGAGGGGAAGAGGAAGGCCTAAAACGATACCACTTTCTGCTGGAACTGGTCATTT
TGTGGCTTCTGTTGCCAGTCTCCCAAAGACAACCTGTGTACTGACTAGTTCAAGCAATCT
CACGTCGTTGAACAAGAGTGGTGGCAAATTTATAGTAAGTAGCGTTAGTTCATGTGGCTG
TGATGTTGAGAAATGCAGTGTTCATTCAGGTGTTTTGTTGTCTGATGATGCACCACCAGC
ACATGGCTTACAAAATACAAATTGTAAGGAAGAATCGAATACCAAAATAGGAAAAGCGGG
ATCTAGAAATAAGCCTGTTGCAGTTGAGCACAATCATTTTACTGATCTTAATGTAAAAGA
ACAAAAAGTGCAGACAACTCCAATGTCAGGTGATCCTGTGATCTTGGTTGAAAATTGTAT
GGAAGGACAAGGCCCCAGAAAGGCTGGGGGGCAACTTCAAAGGATACCTGCTTCAAACAA
GAGTAGTGGCGCATCTGTTGGTGGTGGAACATATAAAATAGAGACATTATCCACACCAAT
GACTAAAGGATCATCTAAAAATAATGACATGGCTTATGGGGCTGGTTTGAATCAGTCTCA
GAATGCAATTGTTGGTTGTGAAGGCATGGAAGTTATTGAAAGCAACACTGCCAATTATAC
TTCTCATTGTAATGAAAATGCACGAGCAAATCAAGTTGCACCCAGTTTCAAGAACAGTGA
TAGGGTCATTGATGAAACGGAAGCTGCGGAACTTGGGCCACTCAAGGAACCAAGGGAAGA
TGACAATTTGTTTACTTGTGTAAACTCAAACTCAGCTTCAATTACAAGTGACATTGCTCA
ACCAAGAGTTGTCTTGTGTTTAGCTCACAACGGCAAAGTCGCTTGGGACATCAAATGGAA
GCCTCCTTTACTAAGTCAACCTGAACAGAAATCACGACTTGGTTTTCTTGCAGTATTGTT
GGGGAATGGCGCTCTTGAAGTGTGGGAAGTTCCATCACCATGTATGATCCAGAAAATATA
TTCCCCCTCTAAGGTGGAGGGTTCTGACCCTCGTTTTCTAAAGCTCCAACCTGTATTTAG
GTGTGTCAAAGTGAAGTGCAGGAACAGGCAAAGGTACTGTGGCTTCAAAGTTTTAGCATG
TGATTGATACTTTTGCTTGATTGGTCACCTTCTCCTCCTCATGATATGATATTGGCGGGT
TGTCATGATGGAACGGTTGCTTTATGGAACTTCTCGATGAATTTGCCAACACAAGATTCA
AAACCTTTTATTCCCATTAGAGCTCTCTCTTGGGCACCATATATAAGTGAAGAAAGCACA
GATACCTTTGTCACTGCTGGAGAGGATGGTCTAAAGTTCTGGGATTTAAGAGATCCATAC
CATCCTCTTTGGGAGCTAACTACTGCTCCAAGGGCTGTATTAAGTCTTCATTGGCTAAAA
GATGGAAGGGGGATCATTATCTCACTGGAAGATGGTACATTGAAGTTTCTAAGCTTGCCT
CGGATTGCAAATGATGTTCCAGCCACTGGAAGGCCATTTTCCGGAACAAAAACTCAGGGT
GTTGCAACTTATCAGTTGTCAGAATATTTGATTTGGAGTGTCCATGCTTCAGAACCTACA
GGTTGTGTGGCTTACTGTGGGGCAGATGGTACTGCTGTGTACTTCCAGCTAAAATCGAGA
TTCTGGGATAAGGAGCCTGGGCGTAACCGTGTTCCTTATTTCCTCTGTGGATCATTATCA
GAGGATGGAGAAAATATTAAGATTGGCAGCAGGCTGCAAACATCTCCATTACCAAATGTG
CCTGTGGGGACCAAAAAGGGTTCAAAACCATCCCAAAGTATAGTTCAGGCGCTTGCTACA
AGCGATGTCACTAGCCTGCTGACATATCAGCTCAACTCCCCCACAGGAAACAATGATGCC
GTAAATCTAGAAGCTCATGATGATCAAGATGATGGACGCAGCAAAGAGCAAGGAGCAGGT
GCTGTAAATCAAGAACTTGATGGTGAACAAGATGATGGACACCGTGAAGAACAAGCAGCA
GGCATGGTAACCACAGAATTTGGCGATGATCAAGCCGATGGACACAGCGAAGAACAAGGA
GCTGGTGCAATAATCTCAGCCACTCCTGCAAAGGAAGAGAATGATGGAACATGGAACGAC
AAGGGTGTTCAATCCCCTAAAGACCTTAATGTCGTCCCTCCGAATTCTGTCGCTTTGAAT
CAAGTGCGGTGGAACATGAACAAGGGTAGCCAGAGATGGCTGTGCTATGGAGGTGCTGCA
GGCATCATACGATGCCAGAGAATCTGAAGAGCCGCAATCTGGAATGCTCTTCGAGAAACA
GAGGCTTGTCACACAGATGGTGGTAGGTTCTACTCTATTCTTTTCTGCTACTTTTGACCG
GGTCGCCGAGGGTGGTTGGCTTAGCTGTGCATAGGGGAGAACCGATGCAATAGACCTTTG
CATCTTAGAATTGCAGTCCCCAGGTTCTGAATACATATGGTATGGAACCTGGGTCCTGAT
AGTTGCGGTAGTACCAGTGCATGCGAACCTGAGCTTTTGCGTTCCATTCTGTGTAAGGGC
TTGTTCGTTTGTCTAGGAATGGATTTGGAATCGTTTCAGCTAATCAAAACTTATATAACT
TAGAGAAGAAATCCAGCTAGAAATTGTTCCCTAATGTGGTTCCTAACTGTTACCTTATGA
TGTGAACAGAACATGATGCATTCGGGAGGAAATAATAAATGCCATAGTGCTC