Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042713_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:3:178060326:178071840:1 gene:Zm00001d042713 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA polymerase alpha catalytic subunit
Sequence

ATGCGTCCAGAAGATTGGCAGAAACGGGGAATGCTCAGCCATTTTACTGTTGTGCGCAAA
CTTGAAGGTAGCATATTTCCTATAGGTCTTGCTAAGGAAGCTTCTGATAGGAACCAGAAG
GCTGGTAGCAACGTGCTAGCACTAGAAAGCAGTGAACGTGCATTATTAAATCGCTTGATG
ATTGAGCTGAGCAAACTTGATTGTGATGTACTTGTGGGACACAATATTTCAGGGTTCGAC
TTGGATGTGCTTCTACACCGTGCTCAGACATGCAAAGTGCCAAGCAGCATGTGGTCCAAG
ATTGGTCGTCTCAGGCGATCATTAATGCCCAGGCTTACCAAAGGAAGCACACTCTATGGT
TCTGGAGCAAGTCCAGGAATTATGTCCTGTGTTGCTGGCCGTCTTCTCTGTGACACCTAT
TTATGCTCTCGTGACCTTCTGAAGGAGGTGAGTTATTCCTTGACACAACTTGCAGAAACA
CAGTTAAAAAAGGTCAGGAAGGAGGTTTCTCCACACGATATACCTATGATGTTCCAGTCT
TCAGGCGAACTGCTCAAACTGGTTGAATATGGTGAGACAGATGCATGGCTTTCTTTGGAG
CTCATGTTTCATTTGAGTGTTCTCCCACTGACACGACAATTAACCAACATTAGTGGTAAC
CTGTGGGGGAAAACACTCCAGGGTGCTAGGGCTCAGAGGGTAGAATATCTACTACTGCAT
TCATTCCATGCAAGAAAATTTATTGCACCAGATAAATTTGCACGCAACAAAGAGCTGAAC
TCCACAAAAAGAAAAATGAATCCTGATACTGGGGGTGCAAATGCTGATGATGGTGCTGCT
GATCCTTCCGTTGATGATGAAGTGCATAATGGTGATCAAAGTAAAGCTAGAAAAGGACCT
TCATATGCTGGTGGATTAGTTTTGGAGCCTAAGAAGGGTCTATATGACAAGTATGTTCTA
CTTCTCGACTTCAACAGCCTTTACCCTTCAATAATTCAGGAATTCAACATATGCTTTACC
ACTGTCGAGCGTTCTTCTGATGGCAGTGTACCTAATTTGCCAGCATCAAAAGTTACTGGT
GTTTTACCTGAGTTGCTGAGGAGTTTGGTGGAGAGGAGAAGGATGGTTAAATCATGGTTG
AAGACTGCTTCTGGTCTTAAAAAGCAGCAGTTCGATATTCAGCAACAAGCATTGAAACTT
ACTGCAAATAGCATGTATGGTTGCTTGGGCTTTTCCAACTCCAGGTTTTATGCAAAGCCA
CTTGCTGAGCTGATTACACTCCAAGGTAGAGAGATATTGCAAAACACTGTAGATCTGGTT
CAGAACAATTTAAATTTGGAGGTTATCTATGGTGATACAGATTCTATCATGATACATACT
GGACTTGATGACATCTCCAGGGCAAAAGCAATTGCAGGAAAGGTTATTCAGGAGGTGAAC
AAAAAGTACCGTTGTCTGGAGATTGATCTTGATGGCATATACAAGAGAATGTTACTTCTT
AAAAAGAAGAAATATGCTGCTATTAAAGTAGCACTGGATGGCAGCTTACGAGAGAACATT
GAACGCAAGGGGCTCGATATGGTCAGACGTGATTGGAGTTTGCTGTCAAAAGACATTGGA
GATTTTTGTCTTAAACAAATTCTGTCTGGAGGGACATGTGATGATGTTGTTGAGTCAATA
CATAGTTCACTTGTCCAGGTGCAAGAGCAAATGAGAAGTGGTCAAATAGAACTCGAAAAA
TATGTTATCACAAAGAGCTTAACAAAAGCACCAGAAGATTATCCAGATGCTAAAAATCAG
CCTCATGTTCAGGTTGCTTTGAGACTCAAGCAAAATGGTTACTCTGGTTGCTCAGCTGGT
GACACAGTACCTTATATAATTTGCTCTCAGCAGGACTCAGATAATGCACATTCTGTGGGA
ATAGCTCAGAGAGCTAGACATCCCGAGGAGTTAAAAAGAGACCCTGACAAGTGGATGATT
GACATTGACTATTATTTATCACAACAGATTCATCCTGTCGTTTCTCGTCTGTGTGCTTCC
ATTCAGGGCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAGTTC
CAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCTGTTATCTGTAATC
GATGACGAAGATGAGAGATATCGTGGTTGTGAACCACTGCGTTTGTCATGCCCAAGCTGT
TCTGGTACCTTCGACTGCCCCCCTGTATCTAGTCTGATTACTAGTGCTAGTGCTACAAGT
GTATCAGATCCAATTGAAGGAAAGGATGCTACTGCTAATTTCTGGCGCCATATGCGGTGC
CCAAGATGCCTAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAG
ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAGATGTGTGAC
GATGAGGGTTGCAAATACTCGACTCACAGCGTAAACCTTAGAGTTATGGGGGATTCTGAG
AGAGGAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGTACAAG
GAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTTGATGCAACCCGGTGT
CTTGAAAAGCTGGACCAGAAGGCAAGGCTCCCCTTCGAGAGAGAGTTTGTAGCAGTAGGC
CAAACAATTAAATTGGCACTGCTAGAGATCCAGAAAATCCGAGACAGATGTGCATTTGGA
TGGGTTCAGCTAAAGGACCTTGCCGTATCAATATGA

Peptide Sequence

PEP ID

Zm00001d042713_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:3:178060326:178071840:1 gene:Zm00001d042713 transcript:Zm00001d042713_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA polymerase alpha catalytic subunit
Sequence

MRPEDWQKRGMLSHFTVVRKLEGSIFPIGLAKEASDRNQKAGSNVLALESSERALLNRLM
IELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSSMWSKIGRLRRSLMPRLTKGSTLYG
SGASPGIMSCVAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKVRKEVSPHDIPMMFQS
SGELLKLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH
SFHARKFIAPDKFARNKELNSTKRKMNPDTGGANADDGAADPSVDDEVHNGDQSKARKGP
SYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEFNICFTTVERSSDGSVPNLPASKVTG
VLPELLRSLVERRRMVKSWLKTASGLKKQQFDIQQQALKLTANSMYGCLGFSNSRFYAKP
LAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVIQEVN
KKYRCLEIDLDGIYKRMLLLKKKKYAAIKVALDGSLRENIERKGLDMVRRDWSLLSKDIG
DFCLKQILSGGTCDDVVESIHSSLVQVQEQMRSGQIELEKYVITKSLTKAPEDYPDAKNQ
PHVQVALRLKQNGYSGCSAGDTVPYIICSQQDSDNAHSVGIAQRARHPEELKRDPDKWMI
DIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSAKFQPRLTESSNQDTSMMLLSVI
DDEDERYRGCEPLRLSCPSCSGTFDCPPVSSLITSASATSVSDPIEGKDATANFWRHMRC
PRCLDNTVESKFSPSMLANQMKRQADNFISLYYKGLQMCDDEGCKYSTHSVNLRVMGDSE
RGTVCPNYPRCNGRLVRQYKESDLYRQLSYFCYVLDATRCLEKLDQKARLPFEREFVAVG
QTIKLALLEIQKIRDRCAFGWVQLKDLAVSI

Transcript Sequence

Transcript ID

Zm00001d042713_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:178060326:178071840:1 gene:Zm00001d042713 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA polymerase alpha catalytic subunit
Sequence

GATTGATAGTCCAATGCGTCCAGAAGATTGGCAGAAACGGGGAATGCTCAGCCATTTTAC
TGTTGTGCGCAAACTTGAAGGTAGCATATTTCCTATAGGTCTTGCTAAGGAAGCTTCTGA
TAGGAACCAGAAGGCTGGTAGCAACGTGCTAGCACTAGAAAGCAGTGAACGTGCATTATT
AAATCGCTTGATGATTGAGCTGAGCAAACTTGATTGTGATGTACTTGTGGGACACAATAT
TTCAGGGTTCGACTTGGATGTGCTTCTACACCGTGCTCAGACATGCAAAGTGCCAAGCAG
CATGTGGTCCAAGATTGGTCGTCTCAGGCGATCATTAATGCCCAGGCTTACCAAAGGAAG
CACACTCTATGGTTCTGGAGCAAGTCCAGGAATTATGTCCTGTGTTGCTGGCCGTCTTCT
CTGTGACACCTATTTATGCTCTCGTGACCTTCTGAAGGAGGTGAGTTATTCCTTGACACA
ACTTGCAGAAACACAGTTAAAAAAGGTCAGGAAGGAGGTTTCTCCACACGATATACCTAT
GATGTTCCAGTCTTCAGGCGAACTGCTCAAACTGGTTGAATATGGTGAGACAGATGCATG
GCTTTCTTTGGAGCTCATGTTTCATTTGAGTGTTCTCCCACTGACACGACAATTAACCAA
CATTAGTGGTAACCTGTGGGGGAAAACACTCCAGGGTGCTAGGGCTCAGAGGGTAGAATA
TCTACTACTGCATTCATTCCATGCAAGAAAATTTATTGCACCAGATAAATTTGCACGCAA
CAAAGAGCTGAACTCCACAAAAAGAAAAATGAATCCTGATACTGGGGGTGCAAATGCTGA
TGATGGTGCTGCTGATCCTTCCGTTGATGATGAAGTGCATAATGGTGATCAAAGTAAAGC
TAGAAAAGGACCTTCATATGCTGGTGGATTAGTTTTGGAGCCTAAGAAGGGTCTATATGA
CAAGTATGTTCTACTTCTCGACTTCAACAGCCTTTACCCTTCAATAATTCAGGAATTCAA
CATATGCTTTACCACTGTCGAGCGTTCTTCTGATGGCAGTGTACCTAATTTGCCAGCATC
AAAAGTTACTGGTGTTTTACCTGAGTTGCTGAGGAGTTTGGTGGAGAGGAGAAGGATGGT
TAAATCATGGTTGAAGACTGCTTCTGGTCTTAAAAAGCAGCAGTTCGATATTCAGCAACA
AGCATTGAAACTTACTGCAAATAGCATGTATGGTTGCTTGGGCTTTTCCAACTCCAGGTT
TTATGCAAAGCCACTTGCTGAGCTGATTACACTCCAAGGTAGAGAGATATTGCAAAACAC
TGTAGATCTGGTTCAGAACAATTTAAATTTGGAGGTTATCTATGGTGATACAGATTCTAT
CATGATACATACTGGACTTGATGACATCTCCAGGGCAAAAGCAATTGCAGGAAAGGTTAT
TCAGGAGGTGAACAAAAAGTACCGTTGTCTGGAGATTGATCTTGATGGCATATACAAGAG
AATGTTACTTCTTAAAAAGAAGAAATATGCTGCTATTAAAGTAGCACTGGATGGCAGCTT
ACGAGAGAACATTGAACGCAAGGGGCTCGATATGGTCAGACGTGATTGGAGTTTGCTGTC
AAAAGACATTGGAGATTTTTGTCTTAAACAAATTCTGTCTGGAGGGACATGTGATGATGT
TGTTGAGTCAATACATAGTTCACTTGTCCAGGTGCAAGAGCAAATGAGAAGTGGTCAAAT
AGAACTCGAAAAATATGTTATCACAAAGAGCTTAACAAAAGCACCAGAAGATTATCCAGA
TGCTAAAAATCAGCCTCATGTTCAGGTTGCTTTGAGACTCAAGCAAAATGGTTACTCTGG
TTGCTCAGCTGGTGACACAGTACCTTATATAATTTGCTCTCAGCAGGACTCAGATAATGC
ACATTCTGTGGGAATAGCTCAGAGAGCTAGACATCCCGAGGAGTTAAAAAGAGACCCTGA
CAAGTGGATGATTGACATTGACTATTATTTATCACAACAGATTCATCCTGTCGTTTCTCG
TCTGTGTGCTTCCATTCAGGGCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGA
TTCGGCTAAGTTCCAACCAAGATTGACTGAGTCGAGCAACCAAGATACATCTATGATGCT
GTTATCTGTAATCGATGACGAAGATGAGAGATATCGTGGTTGTGAACCACTGCGTTTGTC
ATGCCCAAGCTGTTCTGGTACCTTCGACTGCCCCCCTGTATCTAGTCTGATTACTAGTGC
TAGTGCTACAAGTGTATCAGATCCAATTGAAGGAAAGGATGCTACTGCTAATTTCTGGCG
CCATATGCGGTGCCCAAGATGCCTAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTAT
GCTCGCCAACCAGATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTT
GCAGATGTGTGACGATGAGGGTTGCAAATACTCGACTCACAGCGTAAACCTTAGAGTTAT
GGGGGATTCTGAGAGAGGAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGT
AAGACAGTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTTGA
TGCAACCCGGTGTCTTGAAAAGCTGGACCAGAAGGCAAGGCTCCCCTTCGAGAGAGAGTT
TGTAGCAGTAGGCCAAACAATTAAATTGGCACTGCTAGAGATCCAGAAAATCCGAGACAG
ATGTGCATTTGGATGGGTTCAGCTAAAGGACCTTGCCGTATCAATATGATGTTTTTCTTG
TGTGAAAGGGCTCAATTAGATAAGTTTGAATTAACCGTGCAAGAAATTCATCTCTCTGTA
GGTTATTCTAGATCTCGTTGGTAAAAGGAACAGGACACGGCAAACGGTGTATCGAAACAC
CAGCCGTCTTTGGTATTTCCCTGCGTGACAGACCTTGTATCATCTATACATGTGTTTTAG
CCAGTGGCTGTATTG