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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042697_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:177338965:177341399:-1 gene:Zm00001d042697 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:photosystem II subunit PsbS1 description: photosystem II subunit PsbS1
Sequence

ATGGCAGCGCAGTCCATGCTCATGTCGACCAGCGTCAACGGCGGCCGCGCGCTGCCGTCT
CTTCAGGCCGTCCGGCCGGCTCCATACCCGCGGCTACCGCTGCCGTCGTCGTCGTCCTCG
TCAGCTGGCTACAGGCACTCCAAGTCCGTCTCCGTGAAGACGCTCGCCCTGTTCGGCAAA
TCCAAGGTCAAGACCGCGCCGGCGAAGAAGGCTGCTGCGCCCAAGCCCAAGCCGAAGGTT
GAGGATGGTATCTTCGGCACGTCCGGCGGGATCGGTTTCACCAAGGAGAACGAGCTGTTC
GTCGGCCGCGTTGCCATGCTTGGCTTTGCCGCATCGCTACTTGGAGAGGCCATTACCGGG
AAGGGCATCCTTGCGCAGCTGAACCTGGAGACGGGCATCCCCATCTACGAGGCGGAGCCC
CTCCTCCTGTTCTTCATCCTCTTCACCCTCCTTGGCGCCATCGGCGCTCTCGGAGACCGC
GGCCGCTTCGTCGACGAGGAGGTCACCGGCCTCGACAAGGCCGTCATCCAACCCGGCAAG
GGCTTCCGCGGCGCCCTCGGCCTCAGCGAGGGAGGGCCGCTGTTCGGGTTCACCAAGTCG
AACGAGCTGTTCGTGGGGCGGATGGCGCAGCTGGGCGTGGCCTTCTCCATCATCGGCGAG
ATCATCACGGGGAAGGGCGCGCTGGCGCAGCTCAACATCGAGACGGGGGTGCCCATCAAC
GAGATAGAGCCGCTCGTCATCTTCAACGTCCTCTTCTTCTTCATCGCCGCCATCAACCCC
GGCAATGGCAGGTTCATCATCGGCGAGGAAGAGGAATAG

Peptide Sequence

PEP ID

Zm00001d042697_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:177338965:177341399:-1 gene:Zm00001d042697 transcript:Zm00001d042697_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:photosystem II subunit PsbS1 description: photosystem II subunit PsbS1
Sequence

MAAQSMLMSTSVNGGRALPSLQAVRPAPYPRLPLPSSSSSSAGYRHSKSVSVKTLALFGK
SKVKTAPAKKAAAPKPKPKVEDGIFGTSGGIGFTKENELFVGRVAMLGFAASLLGEAITG
KGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEEVTGLDKAVIQPGK
GFRGALGLSEGGPLFGFTKSNELFVGRMAQLGVAFSIIGEIITGKGALAQLNIETGVPIN
EIEPLVIFNVLFFFIAAINPGNGRFIIGEEEE

Transcript Sequence

Transcript ID

Zm00001d042697_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:177338965:177341399:-1 gene:Zm00001d042697 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:photosystem II subunit PsbS1 description: photosystem II subunit PsbS1
Sequence

GCAACAGACCCCCGCCCACGACCACACGCAGCAAGCAGCAGCCGCGCGCTCGCCTAGGAC
TACCGACTACGAGTAGTGCTCAGCTAGCCTCCATCCTCAGCGCGCGAGTGGCTGCTGCGC
ATTCCTCTCTTTATCCGTCTCTGTGCTTGTTTAATTTGTGTTCGTTCGTGAGTAGGCGGC
CGGCACATATGGCAGCGCAGTCCATGCTCATGTCGACCAGCGTCAACGGCGGCCGCGCGC
TGCCGTCTCTTCAGGCCGTCCGGCCGGCTCCATACCCGCGGCTACCGCTGCCGTCGTCGT
CGTCCTCGTCAGCTGGCTACAGGCACTCCAAGTCCGTCTCCGTGAAGACGCTCGCCCTGT
TCGGCAAATCCAAGGTCAAGACCGCGCCGGCGAAGAAGGCTGCTGCGCCCAAGCCCAAGC
CGAAGGTTGAGGATGGTATCTTCGGCACGTCCGGCGGGATCGGTTTCACCAAGGAGAACG
AGCTGTTCGTCGGCCGCGTTGCCATGCTTGGCTTTGCCGCATCGCTACTTGGAGAGGCCA
TTACCGGGAAGGGCATCCTTGCGCAGCTGAACCTGGAGACGGGCATCCCCATCTACGAGG
CGGAGCCCCTCCTCCTGTTCTTCATCCTCTTCACCCTCCTTGGCGCCATCGGCGCTCTCG
GAGACCGCGGCCGCTTCGTCGACGAGGAGGTCACCGGCCTCGACAAGGCCGTCATCCAAC
CCGGCAAGGGCTTCCGCGGCGCCCTCGGCCTCAGCGAGGGAGGGCCGCTGTTCGGGTTCA
CCAAGTCGAACGAGCTGTTCGTGGGGCGGATGGCGCAGCTGGGCGTGGCCTTCTCCATCA
TCGGCGAGATCATCACGGGGAAGGGCGCGCTGGCGCAGCTCAACATCGAGACGGGGGTGC
CCATCAACGAGATAGAGCCGCTCGTCATCTTCAACGTCCTCTTCTTCTTCATCGCCGCCA
TCAACCCCGGCAATGGCAGGTTCATCATCGGCGAGGAAGAGGAATAGGCTGCTGGCTGCT
GCTGCTGGCCTCGGACATGAGTCGTGTGCGTTTACTTTTACCTGTGACTGTAAGTGCTTT
GCTGTGTATCAATTACTCGTGATGAGACCTCGAAGGTAGGGTGTCGCGTTGGGTTGTCTG
CTTGTAGAAACAAGAGCTTATATATAAATTACTACTAGCTA