Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042692_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:177204041:177208754:-1 gene:Zm00001d042692 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TRANSPARENT TESTA 12
Sequence

ATGGCATGGCTTGGCTTGCAGCTTCGAGTACTGGTCGTTCGAGATCCTTGTGCTGTTTGC
AGGGCTGATGCCCGACTCTCATCTCAGCACTTCCATCATTGCAATGTGGTAGTTAACTTA
ACTTACTCTAGCTACTACCATCATTCATTTCGACAATACATAAACCATATCATACATGAT
CACCTATGGCTTCGCCGCTGTCATCAGCACAAGGGTGTCCAACGAGCTGGGAGCCCGGAA
CATCGCCAACGCCAGGAAGGCGCTCACTGTGTCGCTGGCGCTGTCCCTGATGCTGGGGGT
GGCGTTCCTGCTGCTCCTGGGCCTCGGCCACGACCTCTGGGTGCGCCTCTTCATCACCAG
CGAGGCCGTGGTCAGCGCCTTCGCCTCCATGACGCCGCTGCTCATCGGCTCCGTCGTGCT
GGACTCCACGCAGGGGTACTCTGCGGCGTCGCCAGGGGCTACGGGTGGCAGCACCTGGCG
GCGTGGACCAACCTGGTGGCCTTCTATGTCATCGGCTTGCCGCTCGCCATCCTCTTAGGA
TTCACGCTCGCCTTCCAAACCAAGGGGCTGTGGATGGGGCAGATATGCAGCCTCCTCTGC
CAGAACTGCGTCCTCTTTTTTATCACCCTGCGAACCAACTGGCAGGAGTTAGACCTGACC
ATATTCAACAAGGACAACGATTTTGTCTGCTAG

Peptide Sequence

PEP ID

Zm00001d042692_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:177204041:177208754:-1 gene:Zm00001d042692 transcript:Zm00001d042692_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TRANSPARENT TESTA 12
Sequence

MAWLGLQLRVLVVRDPCAVCRADARLSSQHFHHCNVVVNLTYSSYYHHSFRQYINHIIHD
HLWLRRCHQHKGVQRAGSPEHRQRQEGAHCVAGAVPDAGGGVPAAPGPRPRPLGAPLHHQ
RGRGQRLRLHDAAAHRLRRAGLHAGVLCGVARGYGWQHLAAWTNLVAFYVIGLPLAILLG
FTLAFQTKGLWMGQICSLLCQNCVLFFITLRTNWQELDLTIFNKDNDFVC

Transcript Sequence

Transcript ID

Zm00001d042692_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:177204041:177208754:-1 gene:Zm00001d042692 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein TRANSPARENT TESTA 12
Sequence

GAGTTGCGTCCGCCCCTTGCCCCCTCCCTCTCCGTGTCTCCGATTCTGGATCTGCCCATG
CCGTAACCCGCAGGCTCCCGGCATCTCGCTCTTGCCTCCAAAATTCACCTTCGCCGATTG
CCGTCGTGGGCCGCCGCGATGGCGTTGCGGACGCCTCGTACCACCTCCGTCGCATTCTCC
GCTGACTCCCCCCTCGGCGGCGTCCCAATACGCTCCTCAACAGCCTGCTCCGTTCCCACG
CCACCTCCTCTCGCTCCGCTGCGACCACCGAGGACCACCAGAGCGGGACGCCGCGGAACT
CGTCGGCCACGTCCTGGCCGTCGCGCATGCTGACGACGAGGCTGTTGCCCTCCCGGGCGC
CCTCGGCGCGGAGCTCGCACGCGTCCTGCGAGCGCGCGGCGCCGCTGAGGTACGCCTTCA
CCTCCTCGTAGGTGTTGTCGTTGTCGGAGACGGGGCCATAGCGTGAGTAGCGCACCTCGC
CGCCGGGCTCCGAGATGTCGATGGTCACGTAGGGGTCCACGACGTTGAGCAGGCACCGGG
CGCGCCGGCGGAGGAACAAGTTGAAGTAGGTCCGGAACAGAGGACAGGGAGGGACCTAAA
ATTCAAGCCCAAAGGACCAAAGCCCGAAGTTTCTTTTCTTCCCCGCAAAGAAAGAAGGCA
AGAGTTCTCGGCTTCTCGCAAGTCGCGACAGAGAAAGAGGCGGAGTTGCGGAGAAGATGC
AGAGCAGCAGCATGAAGAGGGAGATCAGCGAGGCCCACGACACCATTCGCTTCGGCATCA
ACGCCGGCGTCAAAGCGGACCTCGCCCCGCCGCACCCGAATGAAATCCAGAAATCATTTC
TTCGTTCTAAATTGTAAGTCGGATCAACTTTTACATACAAAGTTTTTCTTTTTCCATCTG
CAAAACCAAAACGACTAAATTAAGAATGGAGCCAAAACGACCTCAATTTAGGAATAGAGG
GAGTGGCTGGTTTCAATTACTTGAACTATATATGGAGGTGTTTGATGACAGGAAATAGGT
GTTTGGTGACAGGAAAGTCTAGAAATAGGTGTTTATAGATTCATCGCGACACGAATTCAC
CAGAAAAGGTTACAAGAGAAATGCAGAGATTTATTCTATGGAGAAAGCATCAGGGCATTC
TGCTTTGCGTCACAAAGTTTCAAACCCAGCAAAACCCCCAGTCGATATATCAGATAGGAT
GATTGGTGATACCAAAGGAAGCAAACTCAAACACACAAAGTTTCAGAAGCACAGCTACTG
CTTGCTCCCTCAGGCGACCTTGACCTCGATGGTCTTGGGCTTCTTGGGCTCCGGCGGGGG
CAGCTTCTCGACGGTCACCGTGAGCACGCCGTCCCTGCACACGGTGTCGCATCGGGCGGC
TCGACGAGGCGGACAAAGCCGGTGGCAGACCATGGGTGCAATGGGTGCAGAGGTGAGTGC
CTGGATGATTCCGTCTGTTCTGTTCTTATATAATATTGAACAAATATTCAGACATGATAC
AAGTGCAGACTTAGGTGGATGGTTCTAAATGTTCACGACAAAAAAATGTGTGGCGCATGG
GTTTCTGTCCTGAGGGTGCGCAGATCGGTCGCCATTAGAAAGATGCAGCTTCAACTACTT
TGGACCAGGTGCAAAGTCATGGCAGTTCTGATAGGGCACGTAAGTATTTTGCTTTCTTGA
TACACTTCAATCCTTCATTTGTTCCACTGCACTGACATTCGTTTCTGACAAACCCATCTC
ATAATCTCACTGATAAAATGGACTTTGTACTAGCTTGCTAATTTATGACACTAGATTCGT
TTTGAGTACACATTGTCTGGACAAAATCTAATAAAATTACAATATCCAGATGAAAGCACA
AACAATATTTTTTATTGCTACTTATGTTTACATTAACCAGTGGTGGTCATTCACTCCTGA
CTTTCTTAAGAAAGAACGCAGACGAAATATTTGCAACAATGACCCTTCTTGGAGAGGGCT
CATGCCCATTCTTTGTCAGGAACAACACATGCTTTGACTGCCACCGTCCTCTGGCTTCCT
TTCCCTCTCTCTCTTTATTTGTTTTTTATGAGGTTGTGTCCAAAATTGACGAAAGGTGAT
AATGTTTTAGCTGCAGTGTCAAATAGCCTATGGTACGTTTGTGGTATAGTGGTGTTACCA
TAGTTCTGTTTAGTTCTATGATCAAAAACTTTGACATGGTTTCCTTACGGTGCTTTCTTA
GTGTTTCCTATCATTGCATTAAGTTGTTTGGTATAATTTGCAGTCAGCTAATACGATACG
AAACGTCTTGACATCTTGCTCAGAGCCTTAGCAAGGGGGGCACTGTACTCCAAGAATTAT
AGAAAAAGTTTATAACAAGGGGGGCCACTGTACTCACAATTATAGTCTCCACGGCTTGAT
ACTCTAATCACAAACAAATTCAAAAGCAATCTTTAGGATTCACTAGATCAGATGTTGCAA
CTGGTACTACCTCTTGATCTGCATGGCAGCACTCATGTAGTCTATCCATTCATTCATTAA
TATTATGTTTGCCTAGCCTGAAAAATCCCAAACATGGATATGGATAAAGAAACATTAAGT
AAAGAACAGTGTGGTCTCTAAATGTTAATAGAATATTCAGTTAGGCTTGTTTTGTTGTTC
AGAAGATTTTAAATATGCTGCTTCATTCAGTTGACTGAATTTTCCAAAAATTCTCACAAC
TAGGATTTTTTAAAATCCGCTTTCTGAAATCATCTAAAAGAAAGCAGGGAATCACAAATT
AGTAGAGAATTTTGTGAAATTATTCAAAAAAATTCAAAGTATTCAATGAGTCACTGAGAT
CTTTGAATAATCGATGATGCTTCATTGCTCTTTCAAACAAGTATTACAGGAGTCATTTAT
AAAACCGTGGAAAACTTTAGATAAAATTCCCATGAAATTAGTGTGAAGCAACGCAGAACA
TTAACCTATTGTGCACTCATGCAAGGAACAGAGCACCCAGTACTACTGGTTCTTAGATAA
ATGGATTAACACCCAGTACTGCAAGGAACAGAGCATCCGTGCATACCTGTTGGCAACAAA
GCCTTCTGTTGCATCATTATGCATTCACTTTTGCAATGATTTTTTTGCACTGATAAAGAG
AAGTAGTCTTTTATGTTATTTTGCCACCATTTGCAATAGTTCTAGCTTTACTCGTCGGCC
AATTTATCAGTTGCAGGTACTAACGGTGCCAGGCTACCAGCTTTGACTATGTGATTTCAT
TACTTGTTGTATTTAGAAAATCTAATATTATGAAGGTCAACTTTCTTATTTTACTGAAAG
TCTAAAACACACTACCTATTAACATATTAGTGCCTGCTCAAGTGCAGAAAAATGGTCAAA
ATCTTCCTTGTGTTGTCTTAGCAATGCTTTAGCACTCCATATATTCTATTATAATTAGGC
AGGGTTGGAGAAGAAAAGCGCATCACAGGGAATATCTATGACACTTTTATACTCATGTTC
TTGTGTTTCTTGTTTGCAGCCTACACAAATCTGGAGTTTGAACACACGACAGGTGATATG
CTTATCTTTTGTGGATGGACTGTTCGCTTGGCTTTTGCTGATTGAATTGGAGCTGCACTT
GTAGTTTGGTAACGTTTATATACATAACTATGCGGATTGCGTTAGCTAGAATATGTCTTC
CAGTACCTGGGTGACAATGGGCTCTAAATTTTAGAGTGTTGTAGATTTGTTTTGTTGCAA
ATGTGGCATGGCATGGCTTGGCTTGCAGCTTCGAGTACTGGTCGTTCGAGATCCTTGTGC
TGTTTGCAGGGCTGATGCCCGACTCTCATCTCAGCACTTCCATCATTGCAATGTGGTAGT
TAACTTAACTTACTCTAGCTACTACCATCATTCATTTCGACAATACATAAACCATATCAT
ACATGATCACCTATGGCTTCGCCGCTGTCATCAGCACAAGGGTGTCCAACGAGCTGGGAG
CCCGGAACATCGCCAACGCCAGGAAGGCGCTCACTGTGTCGCTGGCGCTGTCCCTGATGC
TGGGGGTGGCGTTCCTGCTGCTCCTGGGCCTCGGCCACGACCTCTGGGTGCGCCTCTTCA
TCACCAGCGAGGCCGTGGTCAGCGCCTTCGCCTCCATGACGCCGCTGCTCATCGGCTCCG
TCGTGCTGGACTCCACGCAGGGGTACTCTGCGGCGTCGCCAGGGGCTACGGGTGGCAGCA
CCTGGCGGCGTGGACCAACCTGGTGGCCTTCTATGTCATCGGCTTGCCGCTCGCCATCCT
CTTAGGATTCACGCTCGCCTTCCAAACCAAGGGGCTGTGGATGGGGCAGATATGCAGCCT
CCTCTGCCAGAACTGCGTCCTCTTTTTTATCACCCTGCGAACCAACTGGCAGGAGTTAGA
CCTGACCATATTCAACAAGGACAACGATTTTGTCTGCTAGGAATCTAGAAAGAGTTTTTC
TTTTCTTTTTTGCCATGTGCTGTTGCTGAAACATTGAACCATCAGCATCAGGCTTCGACA
GAGCTGTCTGATGTTTGTTCATCAATTCATCACCAGTGTAACACTACAGATTGTAACATT
TGGAATCTCAAGGATAGGAATTAAAAATGTTCTGATAC