Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042683_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:176794763:176800634:-1 gene:Zm00001d042683 gene_biotype:protein_coding transcript_biotype:protein_coding description:POT family protein

Sequence

ATGGGGTTCTTTGAGCGTATTGGGTTCGTCGGCGTGTCGGCCAACTTGATCACGTACCTC
ACCGGGCCACTCGGCATGTCCACGGCTGCCGCGGCCGCCGGCGTGAACGCGTGGTCCGGA
ACCGTGCAGGTGCTACCGCTCGTCGGCGCTCTCGTCGCTGATTCGCGGCTTGGCCGGTAT
CGAGCTATCCTCGCCGCCTGCGTGCTCTATCTTCTGAGCTTGGGAATGCTAACAGCCTCA
TCCATGATGCTAACCGCGAGCTCGCCGCCGTCGCCGTCTCCTGCCCGGCTCACCCTCTTC
TATGTCGCGCTCTACCTGCTGGCTCTGGCGCAAGGCTTTTTTGGGCCATGCGGGGAAGCC
TTCGGAGCAGACCAGTTCACGCCTAGCGACATCGACGACCTCAGCGCGCCCACACTCCGG
AGCTCATACTTCAACTGGTTCCACTTCTCCATGTCCTGGGGCTACGCCATCGCGACGGCT
GGGCTGAGCTACGTCCAGGACAACGCCGGCTGGACCTTGGGGTTCGGCGCGTGCTGGACC
GCCATGGTGCTATGCCTTGTCGTCTTCTTACTTGGCACGCGAACGTACCGTGCCGCCAAG
CAACCCATCGATGGCGTGCAGGCGTGGGTCGCGAGGGTCTTCCGTCGGAGTGGCACCACT
CCAACTGATGAAAGGCTGCTTCTAGCTCCACAACCTGAGGGTGAGGGCGGACTCATAGCT
AAGCTGCTCCCGATATGGTTGACGAGCTTAGTCTTCGCAGCCATCTACTCGCAGACGTCC
ACTCTGTTCACCAAGCAAGCCAGCACATTGGACAGGCACCTTGGCACGGAGACGGGTCTC
GTCGTGCCGCCCGCGGCGCTCCAGTGCTTGATCGACGTCACCTTCATCGTCATGATCCCC
TTATACGACCGCGTCATTGTGCCCTTGGCGAGGCGCCTCACAGGGCACGCCTCGGGCATC
ACGATGCTCCAGCGCATCGGCGCCAGCATGGCCACGTCCTGTGTCGCCATGGCCGTCGCG
GCGCTGGTGGAAGTCAGGCGGCTCCGCGTGGCCAGAGACGCGGGCCTGGTCGACCGGCCG
GACGTGGCTCTGCCGATGAGCCTGTGGTGGATGATTCCGCAGTACGTTCTCATGGGCCTT
GCCGCGGTGCTGGGTATGGTTGGCCTCGAGGAGTTCTTCTACGACCAGATGCCCGACGCT
CTCCGCAGCGTCGGTCTCGCGCTGTGCCTGAGCATCTTTGGGGTGGGAAGCTACGCCAGC
AGCATGCTTGTGTCCGTCATCGACTGGGCGACGAGGGTCAAAGGGGAGAGCTGGTTCTCT
GACAATCTCAACCGAGCCCACCTCGACTACTTCTACTGGCTCCTGGCAGGGCTCGCGGCT
CTGGAGGTAGCCGTCTTCTTGCATTTTGCAAATCGATACGTCTACACAAAAAAAGCCGAG
CTGTGA

Peptide Sequence

PEP ID

Zm00001d042683_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:176794763:176800634:-1 gene:Zm00001d042683 transcript:Zm00001d042683_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:POT family protein

Sequence

MGFFERIGFVGVSANLITYLTGPLGMSTAAAAAGVNAWSGTVQVLPLVGALVADSRLGRY
RAILAACVLYLLSLGMLTASSMMLTASSPPSPSPARLTLFYVALYLLALAQGFFGPCGEA
FGADQFTPSDIDDLSAPTLRSSYFNWFHFSMSWGYAIATAGLSYVQDNAGWTLGFGACWT
AMVLCLVVFLLGTRTYRAAKQPIDGVQAWVARVFRRSGTTPTDERLLLAPQPEGEGGLIA
KLLPIWLTSLVFAAIYSQTSTLFTKQASTLDRHLGTETGLVVPPAALQCLIDVTFIVMIP
LYDRVIVPLARRLTGHASGITMLQRIGASMATSCVAMAVAALVEVRRLRVARDAGLVDRP
DVALPMSLWWMIPQYVLMGLAAVLGMVGLEEFFYDQMPDALRSVGLALCLSIFGVGSYAS
SMLVSVIDWATRVKGESWFSDNLNRAHLDYFYWLLAGLAALEVAVFLHFANRYVYTKKAE
L

Transcript Sequence

Transcript ID

Zm00001d042683_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:176794763:176800634:-1 gene:Zm00001d042683 gene_biotype:protein_coding transcript_biotype:protein_coding description:POT family protein

Sequence

TAACATGATTTTCCCTTGAGCCTTGGTTTGCATATATAGCTGAACTCATCTCCATCATTG
TGTTTTTTTTTTTTCGAGAAACACTCACTGACGGCAGTAATAGCCAGTAGGGCGCTGGAA
TAAATACTCCAGCCGTTGCTGCGGCCATTAGCCACGAGACGAATTGAAGCCGCAAAAGGT
TCGACGTGCTCCTATCGTTGCGGAGGCGCGCCGCGGGGATACGAATGGAGTCCGGCGGCG
CCGGCGAGCTTCTGTCCGGACCTGCTGGGTCGCCCGTCACATCCAAACCCGGCGGTGGGC
GTGGCGGTTGGCGTGCCGCCCTCTTCATCATCGGTAATCATGCAGATTGCAAGTCTCCAA
ATTTCCTAGTTCGTCCGCAGGTTTTCATGCTTCACTGTCACCGTTGCTGTTGGCTGTTGC
TATGCTACCATATATATATATGCAGTGATGGGGTTCTTTGAGCGTATTGGGTTCGTCGGC
GTGTCGGCCAACTTGATCACGTACCTCACCGGGCCACTCGGCATGTCCACGGCTGCCGCG
GCCGCCGGCGTGAACGCGTGGTCCGGAACCGTGCAGGTGCTACCGCTCGTCGGCGCTCTC
GTCGCTGATTCGCGGCTTGGCCGGTATCGAGCTATCCTCGCCGCCTGCGTGCTCTATCTT
CTGAGCTTGGGAATGCTAACAGCCTCATCCATGATGCTAACCGCGAGCTCGCCGCCGTCG
CCGTCTCCTGCCCGGCTCACCCTCTTCTATGTCGCGCTCTACCTGCTGGCTCTGGCGCAA
GGCTTTTTTGGGCCATGCGGGGAAGCCTTCGGAGCAGACCAGTTCACGCCTAGCGACATC
GACGACCTCAGCGCGCCCACACTCCGGAGCTCATACTTCAACTGGTTCCACTTCTCCATG
TCCTGGGGCTACGCCATCGCGACGGCTGGGCTGAGCTACGTCCAGGACAACGCCGGCTGG
ACCTTGGGGTTCGGCGCGTGCTGGACCGCCATGGTGCTATGCCTTGTCGTCTTCTTACTT
GGCACGCGAACGTACCGTGCCGCCAAGCAACCCATCGATGGCGTGCAGGCGTGGGTCGCG
AGGGTCTTCCGTCGGAGTGGCACCACTCCAACTGATGAAAGGCTGCTTCTAGCTCCACAA
CCTGAGGGTGAGGGCGGACTCATAGCTAAGCTGCTCCCGATATGGTTGACGAGCTTAGTC
TTCGCAGCCATCTACTCGCAGACGTCCACTCTGTTCACCAAGCAAGCCAGCACATTGGAC
AGGCACCTTGGCACGGAGACGGGTCTCGTCGTGCCGCCCGCGGCGCTCCAGTGCTTGATC
GACGTCACCTTCATCGTCATGATCCCCTTATACGACCGCGTCATTGTGCCCTTGGCGAGG
CGCCTCACAGGGCACGCCTCGGGCATCACGATGCTCCAGCGCATCGGCGCCAGCATGGCC
ACGTCCTGTGTCGCCATGGCCGTCGCGGCGCTGGTGGAAGTCAGGCGGCTCCGCGTGGCC
AGAGACGCGGGCCTGGTCGACCGGCCGGACGTGGCTCTGCCGATGAGCCTGTGGTGGATG
ATTCCGCAGTACGTTCTCATGGGCCTTGCCGCGGTGCTGGGTATGGTTGGCCTCGAGGAG
TTCTTCTACGACCAGATGCCCGACGCTCTCCGCAGCGTCGGTCTCGCGCTGTGCCTGAGC
ATCTTTGGGGTGGGAAGCTACGCCAGCAGCATGCTTGTGTCCGTCATCGACTGGGCGACG
AGGGTCAAAGGGGAGAGCTGGTTCTCTGACAATCTCAACCGAGCCCACCTCGACTACTTC
TACTGGCTCCTGGCAGGGCTCGCGGCTCTGGAGGTAGCCGTCTTCTTGCATTTTGCAAAT
CGATACGTCTACACAAAAAAAGCCGAGCTGTGAATCTGCAATTCTTGAAACTTTACAAGT
ATAAAAAATACTTCGCTTATGTTAAAAGAACATGATGTTGGATTTTAGTTGGGCCTGGCC
CAATTTTATTTAATTAGGACAAAAAAATCCTAAGGCATGGACAAAATGCTGGTGAAATAA
AGTGTTTAGTCTCACACGGAA