Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042669_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:176152680:176162899:1 gene:Zm00001d042669 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGGGGCTTTTGCTCCAAGGGGTCGGCGGTGGACAAGTCACCCAGCGACACTACGCTC
GGCCCCGGCCGGGAGGTTGACCGCCATGACCGTCTAGTGGTGAAGGAGGAGAAGAAAGCT
GTGGTGGGGGAGGCTGCTGCCAAGAGGATGCAAGAAGAGCAACATCAACAGCAGCAGCAG
CAGCAGCAGCCAGCAGCGCCACCACTGCCTGTATCGGTGTCGCAAACGGCAGTGCCTGGA
GCTACCGCGGATAACACTGCAGCACCATGGGATGGGGTTTCGGAAGTAAGCTCAATTCTG
GGTAGAGCTAGTACTGCTGGCCTTGGAAAAGCAGTGGAAGTGCTTGACACACTTGGCAGT
AGCATGACAAATTTGAATATAAGTAGTTTTGGATCAGGCACTGCAACAAAGGGGAACAAA
ATATCTATTTTAGCATTTGAGGTTGCCAATACCATAGTCAAAGGTTGCAGTCTAATGCGC
GCCCTTTCAAAAGATAGCATAAAACATTTAAAAGAAACAGTGCTTCACTCTGAAGGTGTT
CAGAATCTTATATCCAAAGATATGGATGAGTTACTCAAGATTGCTGCTGCTGACAAAAGG
GAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCT
CAGTGGCACAACTTGGACCGCTACTTTGATAAGTTGACATCAGAACAGACTCCTCAACAT
CAACTGAAAGAAGAGGCAGAATCAGTAATGCAGGAATTAGTGACTTCTGTTCAGTTTACA
GCTGAACTATACCATGAAATGCATGCCCTGGATAGATTTCAACAAGATTATCAGCGTAAA
CAGCATGAAGAGGATGGTTCTAGTGTTGTGCAAAGAGGTGATAACATGCACATACTAAAG
CAGGAAGTGAAAAGCCAAAGCAAGCATGTTAAAAGTTTGAGGAAAAAGTCTCTGTGGTCT
AAGAATTTGGAAGAGGTCATGGGAAAGCTTGTGGACATTGTGCACTTCTTACATTTGGAG
ATCCATAATGTATTTGGGCGTTCAGACAGTGAAGAATCACAGGAACCTACCAAACGACGT
AATAGATTGGGTCCAGCAGGTCTTGCACTGCATTATGCAAATATCATCAGTCAGATTGAT
ACTCTTGTTTCTCGTTCAAGCTCTGTTCCTCCAAATACAAGGGATGCATTATACCAAAGT
TTGCCACCAACCATAAAGTCATCTCTCCGTTCTAAGCTACACTCCTTTGGAGTTAAGGAA
GAGCTTACTGTTTCTCAAATCAAGGCTGAAATGGAGAAGACCCTGCGGTGGCTTGTCCCT
ATTGCAAGTAACACCACCAAGGCTCACCATGGTTTCGGTTGGGTTGGAGAGTGGGCAAAT
ACTGGGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGAGACA
CTGTACCACGCTGACAAGGAGAAGACTGAAGCATATATCCTCGAGCTTGTTATTTGGCTT
CATCATCTTATCAGCCTATCCAAAACTGCAAATGGTGAAAGGTCTCCAATCAAGTCTCCT
GTTCGGTCTCCTACACAAAGAGGGGCCTCAATCACATTATCTCCAAACAAAAACAGCAGC
AATTCATCACCTCTTCTGACGCAAGAAGATCAAGATATGCTAAGGGATGTCAAGTACAGG
AAATTCATCCCTGGTATAAGCAAAAGCCAGGAGTTTGACACTAAGGAAAGGCATAATAAG
CAAAGCAGGTTAAGCAAAAGTAATAGCCATTCACCAAGCAGTGGCAACCGGAAAGAGACG
CTATCAATCAGGAGGCTGCTTCCTGTGATCGACTTTGAGATCGACAGGATAAAAGCCCTT
GATATGATCGACAGAGTTGACGATCTGAGAGTACAATGA

Peptide Sequence

PEP ID

Zm00001d042669_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:176152680:176162899:1 gene:Zm00001d042669 transcript:Zm00001d042669_T005 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGGFCSKGSAVDKSPSDTTLGPGREVDRHDRLVVKEEKKAVVGEAAAKRMQEEQHQQQQQ
QQQPAAPPLPVSVSQTAVPGATADNTAAPWDGVSEVSSILGRASTAGLGKAVEVLDTLGS
SMTNLNISSFGSGTATKGNKISILAFEVANTIVKGCSLMRALSKDSIKHLKETVLHSEGV
QNLISKDMDELLKIAAADKREELKVFSTEVVRFGNRCKDPQWHNLDRYFDKLTSEQTPQH
QLKEEAESVMQELVTSVQFTAELYHEMHALDRFQQDYQRKQHEEDGSSVVQRGDNMHILK
QEVKSQSKHVKSLRKKSLWSKNLEEVMGKLVDIVHFLHLEIHNVFGRSDSEESQEPTKRR
NRLGPAGLALHYANIISQIDTLVSRSSSVPPNTRDALYQSLPPTIKSSLRSKLHSFGVKE
ELTVSQIKAEMEKTLRWLVPIASNTTKAHHGFGWVGEWANTGSDVNCKPNGQIDLIRIET
LYHADKEKTEAYILELVIWLHHLISLSKTANGERSPIKSPVRSPTQRGASITLSPNKNSS
NSSPLLTQEDQDMLRDVKYRKFIPGISKSQEFDTKERHNKQSRLSKSNSHSPSSGNRKET
LSIRRLLPVIDFEIDRIKALDMIDRVDDLRVQ

Transcript Sequence

Transcript ID

Zm00001d042669_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:176152680:176162899:1 gene:Zm00001d042669 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGGGGCTTTTGCTCCAAGGGGTCGGCGGTGGACAAGTCACCCAGCGACACTACGCTC
GGCCCCGGCCGGGAGGTTGACCGCCATGACCGTCTAGTGGTGAAGGAGGAGAAGAAAGCT
GTGGTGGGGGAGGCTGCTGCCAAGAGGATGCAAGAAGAGCAACATCAACAGCAGCAGCAG
CAGCAGCAGCCAGCAGCGCCACCACTGCCTGTATCGGTGTCGCAAACGGCAGTGCCTGGA
GCTACCGCGGATAACACTGCAGCACCATGGGATGGGGTTTCGGAAGTAAGCTCAATTCTG
GGTAGAGCTAGTACTGCTGGCCTTGGAAAAGCAGTGGAAGTGCTTGACACACTTGGCAGT
AGCATGACAAATTTGAATATAAGTAGTTTTGGATCAGGCACTGCAACAAAGGGGAACAAA
ATATCTATTTTAGCATTTGAGGTTGCCAATACCATAGTCAAAGGTTGCAGTCTAATGCGC
GCCCTTTCAAAAGATAGCATAAAACATTTAAAAGAAACAGTGCTTCACTCTGAAGGTGTT
CAGAATCTTATATCCAAAGATATGGATGAGTTACTCAAGATTGCTGCTGCTGACAAAAGG
GAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCT
CAGTGGCACAACTTGGACCGCTACTTTGATAAGTTGACATCAGAACAGACTCCTCAACAT
CAACTGAAAGAAGAGGCAGAATCAGTAATGCAGGAATTAGTGACTTCTGTTCAGTTTACA
GCTGAACTATACCATGAAATGCATGCCCTGGATAGATTTCAACAAGATTATCAGCGTAAA
CAGCATGAAGAGGATGGTTCTAGTGTTGTGCAAAGAGGTGATAACATGCACATACTAAAG
CAGGAAGTGAAAAGCCAAAGCAAGCATGTTAAAAGTTTGAGGAAAAAGTCTCTGTGGTCT
AAGAATTTGGAAGAGGTCATGGGAAAGCTTGTGGACATTGTGCACTTCTTACATTTGGAG
ATCCATAATGTATTTGGGCGTTCAGACAGTGAAGAATCACAGGAACCTACCAAACGACGT
AATAGATTGGGTCCAGCAGGTCTTGCACTGCATTATGCAAATATCATCAGTCAGATTGAT
ACTCTTGTTTCTCGTTCAAGCTCTGTTCCTCCAAATACAAGGGATGCATTATACCAAAGT
TTGCCACCAACCATAAAGTCATCTCTCCGTTCTAAGCTACACTCCTTTGGAGTTAAGGAA
GAGCTTACTGTTTCTCAAATCAAGGCTGAAATGGAGAAGACCCTGCGGTGGCTTGTCCCT
ATTGCAAGTAACACCACCAAGGCTCACCATGGTTTCGGTTGGGTTGGAGAGTGGGCAAAT
ACTGGGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGAGACA
CTGTACCACGCTGACAAGGAGAAGACTGAAGCATATATCCTCGAGCTTGTTATTTGGCTT
CATCATCTTATCAGCCTATCCAAAACTGCAAATGGTGAAAGGTCTCCAATCAAGTCTCCT
GTTCGGTCTCCTACACAAAGAGGGGCCTCAATCACATTATCTCCAAACAAAAACAGCAGC
AATTCATCACCTCTTCTGACGCAAGAAGATCAAGATATGCTAAGGGATGTCAAGTACAGG
AAATTCATCCCTGGTATAAGCAAAAGCCAGGAGTTTGACACTAAGGAAAGGCATAATAAG
CAAAGCAGGTTAAGCAAAAGTAATAGCCATTCACCAAGCAGTGGCAACCGGAAAGAGACG
CTATCAATCAGGAGGCTGCTTCCTGTGATCGACTTTGAGATCGACAGGATAAAAGCCCTT
GATATGATCGACAGAGTTGACGATCTGAGAGTACAATGATGAACCTAGATTAAGCAATGG
CAAAGTCTGAAAAATGCACCCTCAATCTATGATCCTGAAAATCAAGATTGCTTGAAAGAT
ACAAGTAATCAGCTGAGCTGAATTGGCATGCTGTCAGCACTTCTGCAGCAATGTCCCTGC
TTGAGGTGAACAGGCATCATGGTGCCAGTTTGAAGGCACCACGAGGGTTAGAGATGGTGG
CAGCATGTTCTGGCCAACTTTGTATGATATATGGCAGGGTTAATAGGAAAGTGAAATTTT
ATTGTAAAAAGGGATTTGTTGTGTTACTTAGCTCATGTACAAGGAATACAAGTTTTGAGA
GGGCGGAGGGGGATCAAAGATCTGACTGTGTTTCTTGCTGTTTTTGTTAGTTCTATCAAA
TCCATG