Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d042639_T009
CDS Infomation	cds chromosome:B73_RefGen_v4:3:174863640:174893502:-1 gene:Zm00001d042639 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mitotic spindle checkpoint protein MAD1
Sequence	ATGGAGCTCAAGCTATTGAATTCCAGTGCTTTGCCTAATCAACATGCCCCAACAGAAGAA CAGAAGTTGATCAAGCTTTTGCAAGAGGAGCTCCGGAATTATGAAAAAGAAGTGCATGAA GCTAAAAGGTTGAAATCTTCCCACATGAATGTTGAGTTGCTGAAAGAAAAACTATTGGAG GAGCAGGGGCGCAGGGAAAGAGCAGAACTTGAATTATCTAAACTGCAGGAAATTGGTGCT AGAGCACATAAGCTGGAGCTTGAATTAGCATCTTGTACAGCACTGCTCAGCAACATACCT GATGTGTCTTCTTATGCTGACATACCCCAAAAGATCGCAGATCTGCAAAAGCAAGCATTG ACATATTTGAACGAAGTTGGTGAGGTAACATCAAGGTTGAAAGAATTAGAGGTTGCACTA GAATATGCTGATCTCAGCAAGCAACAAGCAGAAGGTGAAGCTGCTCTTGCTAAAGAGAGG GCTGCAAGTGCTACTAGGGAGGTCAAGCGGCTTGAGCTTATGCTTACTGCGATCAGTGAA GAAAGAGATAAGCTGAGAAAGGAACATGCTACGGAGTCGGATCAGTCTGGGATGGAAAAA ACGATAAGAGAGCTGGAGAGCATTATACACGAGCTGAAAGAATTGATTAGTCACAAGGAC ACTGAACTCAATATAATGAATGAAAGATTAAACCTTGAAACAAGGAAAGTGAAGTCTTTG GAGCGAGAGGGAGATCAGCTACGCTCTCAGGTGGCATTACTAGAGTCTAAGTTAGGTCAT GGGGATTACTCTGCTTCAAGCACAAAAGTACTGCGCATGATGAATACTCTTGGAGTCGAC AATGAAGCCAAGCAGACAATAGAAGTACTGCAAGCTGAGCTAAAGAAAACAAAAGAGAGG CTGCAAGCAGTTGAAGAACTGAAAGGACAAACTGATCCTGGAACCGTGGTAGACGCTAAT ATTGCTGAAAAGTTAGCACAACTTAAGAATCAAATTGCGACACTTGAAAAACGTGAAGAA AGATACAAGGCGGTGTTTGCAGAGAGGATCTCGGTCTTCCGGAAAGCCTGCTGCTCCCTT TTCGGTTACAAGATAGTGATGAATGATCAGCAGCAGTCAAATGGGATTCCCGTAACACGC TTTATTCTGCAGTCAGTGTATGCCCAAAGCGATGATGAAAAGCTTGAGTTTGACTATGAA TCAGGAAGCACTAATATCGTGGTCAACGATTACACATCCCAACAAGAAATTGCTCGGCAG GTCGACATCTACATAAGGAGGACGAACTCCATACCAGCCTTCACTGCCAACCTGACAATG GAGTCTTTCAACAAAAGAAGTATATGCTGA

Peptide Sequence

PEP ID	Zm00001d042639_P009
PEP Infomation	pep chromosome:B73_RefGen_v4:3:174863640:174893502:-1 gene:Zm00001d042639 transcript:Zm00001d042639_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mitotic spindle checkpoint protein MAD1
Sequence	MELKLLNSSALPNQHAPTEEQKLIKLLQEELRNYEKEVHEAKRLKSSHMNVELLKEKLLE EQGRRERAELELSKLQEIGARAHKLELELASCTALLSNIPDVSSYADIPQKIADLQKQAL TYLNEVGEVTSRLKELEVALEYADLSKQQAEGEAALAKERAASATREVKRLELMLTAISE ERDKLRKEHATESDQSGMEKTIRELESIIHELKELISHKDTELNIMNERLNLETRKVKSL EREGDQLRSQVALLESKLGHGDYSASSTKVLRMMNTLGVDNEAKQTIEVLQAELKKTKER LQAVEELKGQTDPGTVVDANIAEKLAQLKNQIATLEKREERYKAVFAERISVFRKACCSL FGYKIVMNDQQQSNGIPVTRFILQSVYAQSDDEKLEFDYESGSTNIVVNDYTSQQEIARQ VDIYIRRTNSIPAFTANLTMESFNKRSIC

Transcript Sequence

Transcript ID	Zm00001d042639_T009
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:174863640:174893502:-1 gene:Zm00001d042639 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mitotic spindle checkpoint protein MAD1
Sequence	ACCGCCTCCATCCCCGCTCCGGCCTCCCCTCCGGAAGTCCCAAACCCTAGGAACCAGCTG AACTGCCGAAGCTTTCAGAACCCCAGGCGGCAAGAACAATTGCGGCGAGATGATTCTCCG GACTCCACCACAGCGGAAGCGCCGCGCAGGCTCCGGCGCCGGCGATGACGCCGATCTCGG TCTTGTCAAATCCGTGGGCGTCGCGAGCGCGACCGGCCGTAGTCCGGTCTCCGATCGCCG CCTGGCCCTCTACGACCGCCCCACCGCCCTCGCGCTTGCCGACGCCCCCGGGGAGCCGTT CGACGACATGGTCTGCACGTACCACTGCCGCCAGATGGTCAAATCCGAGTTCATGGTGGC ACTTGACACGGCAGAGAAGCAAGTTCAGGAGTATCAAACAAAACTTGTTGCCTTGGAGGA CCAATTATCTAAGAGTGAGGATGAAAGAATGCAGTTTCTGGATAAACTTAACTATGTGGA ACAAGAACTGGCAGCAACCAAAGGACGGGAGAGTGCATTACAGGAACGCCTACTAAAGGA GTTGGGTGAATATCAGGAACGATATCGTGGTCAAGTAATGAAAATAAATGAACTTGAGGT TGTCTTCTTACCCTTTATCATATTCTTTTCTAGGGGAGATCCCCTTTTGACACATGATCT GCATCTCTTTCATTTGTTGTATTCCTGCATTTCTTGCAAGGAACTTCAGTGCAGGAGTGC CTTGACTGCCTCATGTCTACCATATTTACTATTGCATCATATGTAGCATTGAAATTGCTC TAGGTTGATACAACTAGTATCATGCTTTATGTTTGCTAGGGTGTTGTTTCCTGTCAGTGC ATTTTGTCCCTTTCTTGGTGTGGAGGGAGCATTAAACATGTGTTTTTATTATGCAACACC ATGGTGGTAATCCTATGTCAGATATATGAATTAGTGTTCATGGCCATAGTTAAACTTGTC CTATCATATATTTGTTTTATCAGTGTACATGAATAGTGCCATGCTTTATGGTAATGTAGG TACAACTCAATAAAGAGATTGATTCTAGGATCAGTGCAGAATCATCAGTATCATCCGCGA AGGCATTGATCAAAGACTTGGAAGGGGATTTGCATCGATTATCTGAAAGTTCAGAAAGGG AGAAGAAAACCCTTAAGAAGGAACTTTCATACGTGAAAGAAGACTTATCCCTATCTGCTT CCAAAAATAATGCTGAGCTTGAGAAAACAATACTCAGAGCAGAAAACTATGAGAGTGAGG CAAAGTTGTTGAACGAGCAGTTGACCAACTTGAAAAAGCAACTTGACGAGTGTCTCAGTG AGAAGAATGAAATGGAGCTCAAGCTATTGAATTCCAGTGCTTTGCCTAATCAACATGCCC CAACAGAAGAACAGAAGTTGATCAAGCTTTTGCAAGAGGAGCTCCGGAATTATGAAAAAG AAGTGCATGAAGCTAAAAGGTTGAAATCTTCCCACATGAATGTTGAGTTGCTGAAAGAAA AACTATTGGAGGAGCAGGGGCGCAGGGAAAGAGCAGAACTTGAATTATCTAAACTGCAGG AAATTGGTGCTAGAGCACATAAGCTGGAGCTTGAATTAGCATCTTGTACAGCACTGCTCA GCAACATACCTGATGTGTCTTCTTATGCTGACATACCCCAAAAGATCGCAGATCTGCAAA AGCAAGCATTGACATATTTGAACGAAGTTGGTGAGGTAACATCAAGGTTGAAAGAATTAG AGGTTGCACTAGAATATGCTGATCTCAGCAAGCAACAAGCAGAAGGTGAAGCTGCTCTTG CTAAAGAGAGGGCTGCAAGTGCTACTAGGGAGGTCAAGCGGCTTGAGCTTATGCTTACTG CGATCAGTGAAGAAAGAGATAAGCTGAGAAAGGAACATGCTACGGAGTCGGATCAGTCTG GGATGGAAAAAACGATAAGAGAGCTGGAGAGCATTATACACGAGCTGAAAGAATTGATTA GTCACAAGGACACTGAACTCAATATAATGAATGAAAGATTAAACCTTGAAACAAGGAAAG TGAAGTCTTTGGAGCGAGAGGGAGATCAGCTACGCTCTCAGGTGGCATTACTAGAGTCTA AGTTAGGTCATGGGGATTACTCTGCTTCAAGCACAAAAGTACTGCGCATGATGAATACTC TTGGAGTCGACAATGAAGCCAAGCAGACAATAGAAGTACTGCAAGCTGAGCTAAAGAAAA CAAAAGAGAGGCTGCAAGCAGTTGAAGAACTGAAAGGACAAACTGATCCTGGAACCGTGG TAGACGCTAATATTGCTGAAAAGTTAGCACAACTTAAGAATCAAATTGCGACACTTGAAA AACGTGAAGAAAGATACAAGGCGGTGTTTGCAGAGAGGATCTCGGTCTTCCGGAAAGCCT GCTGCTCCCTTTTCGGTTACAAGATAGTGATGAATGATCAGCAGCAGTCAAATGGGATTC CCGTAACACGCTTTATTCTGCAGTCAGTGTATGCCCAAAGCGATGATGAAAAGCTTGAGT TTGACTATGAATCAGGAAGCACTAATATCGTGGTCAACGATTACACATCCCAACAAGAAA TTGCTCGGCAGGTCGACATCTACATAAGGAGGACGAACTCCATACCAGCCTTCACTGCCA ACCTGACAATGGAGTCTTTCAACAAAAGAAGTATATGCTGAAGACATGAAACTAGTGTCA GGGCACATTGCTTGATTTCTGTATGTTATCATTGACGAAGAGTATGTATATGAGCACTCA CATTGGTGGGTGAAAACTGCTCCTGCTAATTGAAGTTGAGGCTGGAGCTTTGATT