Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042621_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:3:174100814:174105355:-1 gene:Zm00001d042621 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA4
Sequence

ATGGCAACGGAGGCGTCTACCTCTGCGGCGGGCGGGATCTGGGTGGAGGGGATGTCCGCG
GACAACATCAAGGGGCTGGTGCTCGCGCTCTCCTCCAGCTTCTTCATCGGGGCCAGCTTC
ATCGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAGGTGTTGGT
GGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGATTACAATGATTGTTGGA
GAAGTGGCTAACTTTGCAGCATATGCTTTTGCTCCTGCTATCTTGGTCACACCACTTGGT
GCACTTAGCATCATAATTAGTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCAT
ATATTTGGTATACTTGGGTGTGTTCTTTGTGTTGTGGGTTCAACAACTATTGTACTTCAT
GCCCCTCAGGAGCGCACAATTGAATCTGTAGCAGAAGTGTGGGATCTTGCTACTGAACCA
GCCTTTCTATCTTATGCTGCCATCGTTCTTGCTGCAACATTTGTCCTCATATACTACTTT
ATTCCACGATATGGTCAGACACACATCATGGTCTATATTGGTGTTTGTTCCCTTGTAGGA
TCTCTGTCGGTCATGAGTGTGAAAGCTCTTGGAATAGCCTTGAAACTGACCTTTTCTGGC
ATGAATCAGCTAATTTATCCACAAACATGGTTGTTCACCATTGTTGTTGTTGCATGTATA
GTAACACAGATGAACTACCTGAACAAGGTAATACTGAATTACTGA

Peptide Sequence

PEP ID

Zm00001d042621_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:3:174100814:174105355:-1 gene:Zm00001d042621 transcript:Zm00001d042621_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA4
Sequence

MATEASTSAAGGIWVEGMSADNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGVRAGVG
GYSYLYEPLWWAGMITMIVGEVANFAAYAFAPAILVTPLGALSIIISAALADIMLKEKLH
IFGILGCVLCVVGSTTIVLHAPQERTIESVAEVWDLATEPAFLSYAAIVLAATFVLIYYF
IPRYGQTHIMVYIGVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWLFTIVVVACI
VTQMNYLNKVILNY

Transcript Sequence

Transcript ID

Zm00001d042621_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:174100814:174105355:-1 gene:Zm00001d042621 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA4
Sequence

ACACCGAAATATCCGCGTGGCGTGGACTCGGGCACCACTCTCCATTCCTGCATCCCATTC
CCATCTCTTCTTCGCCTCCTCCGCCTCGCCGGCGTCACCGTCCGGCCCCGCCTCTTCCCC
CCGCTCGAAGCTCGATCTCTCCTCCCGTTCTCCGCCCACGCAATCCCTGCCACCGCCGAA
TGCGGAACACTCGCCTTTGGTGACCGACTGACCTACCCTGCTTCTGCCGGGTTAGTTGAG
TGTCCGCGCCTACCGGACCCCGCGCCGCGTCCGGATCTCGAATGCGCCGCCGCCGCCGTC
GCGCGATCTAGCGGCTGCGCGCTGCCCCGCAGGAGGGTAGAGCTCCAGGGGCCCGGTGTG
GTCAGGCGGCGGATATGGCAACGGAGGCGTCTACCTCTGCGGCGGGCGGGATCTGGGTGG
AGGGGATGTCCGCGGACAACATCAAGGGGCTGGTGCTCGCGCTCTCCTCCAGCTTCTTCA
TCGGGGCCAGCTTCATCGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCC
GCGCAGGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGATTA
CAATGATTGTTGGAGAAGTGGCTAACTTTGCAGCATATGCTTTTGCTCCTGCTATCTTGG
TCACACCACTTGGTGCACTTAGCATCATAATTAGTGCTGCTCTTGCAGACATTATGTTGA
AGGAAAAGCTGCATATATTTGGTATACTTGGGTGTGTTCTTTGTGTTGTGGGTTCAACAA
CTATTGTACTTCATGCCCCTCAGGAGCGCACAATTGAATCTGTAGCAGAAGTGTGGGATC
TTGCTACTGAACCAGCCTTTCTATCTTATGCTGCCATCGTTCTTGCTGCAACATTTGTCC
TCATATACTACTTTATTCCACGATATGGTCAGACACACATCATGGTCTATATTGGTGTTT
GTTCCCTTGTAGGATCTCTGTCGGTCATGAGTGTGAAAGCTCTTGGAATAGCCTTGAAAC
TGACCTTTTCTGGCATGAATCAGCTAATTTATCCACAAACATGGTTGTTCACCATTGTTG
TTGTTGCATGTATAGTAACACAGATGAACTACCTGAACAAGGTAATACTGAATTACTGAT
TTTTCATTTTATTAATGGACAGTCCAATGGTGTGCATATATAGTGAGTATTGAGTACAGC
AATTACTTTTGCGCCACATGTTTTTTCATGTTCTGCATGGAAGTAAGTGGCACTGTGCTG
GCAGGAATGCAGGGTATACCCATGCTTATTGAACTTTTGCTTGTTACATGAGTCATAATG
AACTGTCGATGTGAAACTACAATGCATATTGTGAATTTATCATACTTGGCCCGTTGAGTA
GTTTGATACTTGGGTACCTTGATCATCTCCTGCTATTGTAATTGTTTTCTTTCTTGAGTT
ATCTTAAATGCAAAAGTTGTGGATGTACTACCAGATGTTTTCACATTGCATATTGTGGTT
AGTTAGGTCTAATATACATCCATGCAATACCCATTGTTGTTACCTGCAGAGCATGCGCTA
TTACTACTTTCTATAATATGCCATAATAGACATTAACATGATGTTAGGATTAATATTTCT
CAACACCTGATTCTACTTTTATAGAAATTTGGTGTGATACTTTTCAGTAAAGCAACTAAA
TTTAGTTTTTTTTTGGTAGGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATA
CTATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGGACTGGGA
TCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTTGTTACCATTCTTTCGGG
GACGTTTCTTCTCCACAAGACAAAAGACATGGTTGATGGCCTCCCGCCAACTCTACCTGT
CCGGATTCCTAAACATGAGGACGATGGAGCTGAAGGAATCCCTCTCAGATCCGCTGAAGG
CATCCCGCTCAGATCACCGAGGGCAACGGAATCGTTTCGATCAACGCTATAATGGTTGGT
GATCCTTCTTCAAAGGCCATGGTCAGCCATTCTTTCATTTGATAACACACCTTTGTAGAT
TGTATTTTAGGATTCCAAAAGGTAAAGGCACCGCTCCCCATGTAATTTTTTTGAGACACC
GGTGTAGAGTATTGGGGGAACTTATGTTATACATCTCGAAATGCCCAGAATGGGCTTAGA
TC