Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042619_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:174092432:174095154:1 gene:Zm00001d042619 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

ATGGCGGAGAACAACGTCGTGGCCACGTACTACTACCCGACGGCAGCGCCGGCGGCCATG
GAGGTCTGCGGCGCGGAGCTCGGCCAGGGCAAGCCCGACAAGTGCTTCGACGACGATGGC
CGCCCCAAGCGCAATGGGACGATGTGGACGGCGAGCGCGCACATCATCACGGCGGTGATC
GGCTCCGGGGTGCTCTCGCTGGGGTGGGCCATCGCGCAGCTCGGCTGGGTGGCCGGACCC
GTCGTCATGCTGCTCTTCTCGCTCGTCACCTACTACACCTCGTCGCTGCTCGCAGACTGC
TACCGCTCCGGCGACCCCAGCACCGGCAAGCGGAACTACACCTACATGGACGCCGTCAAC
GCGAACCTCAGTGGCATCAAGGTCCAGATCTGCGGGTTCCTGCAGTACGCCAACATCGTG
GGCGTGGCCATCGGCTACACCATCGCTGCCTCCATTAGCATGCTCGCGATCAGGAGGGCC
AACTGCTTCCACCAGAAGGGACACGGCAACCCCTGCAAGATCTCCAGCACGCCCTACATG
ATCATCTTCGGCGTGGCGGAGATCTTCTTCTCGCAGATCCCGGACTTCGACCAGATCTCC
TGGCTCTCCATCCTCGCCGCCGTCATGTCCTTCACCTACTCCTCCATTGGGCTCGGCCTG
GGCGTCGTCCAAGTCATCGCGAACAGAGGCGTGCAGGGCAGCCTGACCGGCATCACCATC
GGCGTGGTGACCCCGATGGACAAGGTGTGGCGCAGCCTCCAGGCGTTCGGCGACGTCGCC
TTCGCCTACTCCTACTCCCTCATCCTGATCGAGATCCAGGACACCATCCGGGCGCCGCCG
CCGTCGGAGTCGACGGTGATGAAGCGCGCCACGGTGGTGAGCGTGGCGGTCACCACGCTC
TTCTACATGCTGTGCGGCTGCATGGGGTACGCGGCGTTCGGCGACGGCGCGCCCGGGAAC
CTCCTCACGGGCTTCGGCTTCTACGAGCCCTTCTGGCTCCTGGACGTGGCCAACGCCGCC
ATCGTGGTCCACCTGGTCGGCGCCTACCAGGTCTACTGCCAGCCGCTGTTCGCCTTCGTG
GAGAAGTGGGCCGCGCAGCGGTGGCCGGACTCGGCGTACATCACCGGGGAGGTCGAGGTC
CCGCTCCCGCTCCCGGCGAGCCGGCGGCGGTGCTGCAAGGTGAACCTGTTCCGGGCGACG
TGGCGGACGGCGTTCGTCGTGGCCACGACGGTCGTGTCCATGCTGCTGCCCTTCTTCAAC
GACGTGGTGGGCTTCCTGGGCGCGCTCGGCTTCTGGCCGCTCACCGTCTACTTCCCCGTC
GAGATGTACGTGGTGCAGAAGAAGGTGCCGCGGTGGAGCTCCCGGTGGGTGTGCCTGCAG
ATGCTCAGCCTCGGCTGCCTCGTCATCTCCATCGCCGCCGCAGCCGGGTCCATCGCCGGC
ATCGCGTCCGACCTCAAAGTCTACCGCCCGTTCAAGTCCTACTGA

Peptide Sequence

PEP ID

Zm00001d042619_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:174092432:174095154:1 gene:Zm00001d042619 transcript:Zm00001d042619_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

MAENNVVATYYYPTAAPAAMEVCGAELGQGKPDKCFDDDGRPKRNGTMWTASAHIITAVI
GSGVLSLGWAIAQLGWVAGPVVMLLFSLVTYYTSSLLADCYRSGDPSTGKRNYTYMDAVN
ANLSGIKVQICGFLQYANIVGVAIGYTIAASISMLAIRRANCFHQKGHGNPCKISSTPYM
IIFGVAEIFFSQIPDFDQISWLSILAAVMSFTYSSIGLGLGVVQVIANRGVQGSLTGITI
GVVTPMDKVWRSLQAFGDVAFAYSYSLILIEIQDTIRAPPPSESTVMKRATVVSVAVTTL
FYMLCGCMGYAAFGDGAPGNLLTGFGFYEPFWLLDVANAAIVVHLVGAYQVYCQPLFAFV
EKWAAQRWPDSAYITGEVEVPLPLPASRRRCCKVNLFRATWRTAFVVATTVVSMLLPFFN
DVVGFLGALGFWPLTVYFPVEMYVVQKKVPRWSSRWVCLQMLSLGCLVISIAAAAGSIAG
IASDLKVYRPFKSY

Transcript Sequence

Transcript ID

Zm00001d042619_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:174092432:174095154:1 gene:Zm00001d042619 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

GTTGCCTCCTTGGACACTCCGCAGATTGACATGGCGGAGAACAACGTCGTGGCCACGTAC
TACTACCCGACGGCAGCGCCGGCGGCCATGGAGGTCTGCGGCGCGGAGCTCGGCCAGGGC
AAGCCCGACAAGTGCTTCGACGACGATGGCCGCCCCAAGCGCAATGGGACGATGTGGACG
GCGAGCGCGCACATCATCACGGCGGTGATCGGCTCCGGGGTGCTCTCGCTGGGGTGGGCC
ATCGCGCAGCTCGGCTGGGTGGCCGGACCCGTCGTCATGCTGCTCTTCTCGCTCGTCACC
TACTACACCTCGTCGCTGCTCGCAGACTGCTACCGCTCCGGCGACCCCAGCACCGGCAAG
CGGAACTACACCTACATGGACGCCGTCAACGCGAACCTCAGTGGCATCAAGGTCCAGATC
TGCGGGTTCCTGCAGTACGCCAACATCGTGGGCGTGGCCATCGGCTACACCATCGCTGCC
TCCATTAGCATGCTCGCGATCAGGAGGGCCAACTGCTTCCACCAGAAGGGACACGGCAAC
CCCTGCAAGATCTCCAGCACGCCCTACATGATCATCTTCGGCGTGGCGGAGATCTTCTTC
TCGCAGATCCCGGACTTCGACCAGATCTCCTGGCTCTCCATCCTCGCCGCCGTCATGTCC
TTCACCTACTCCTCCATTGGGCTCGGCCTGGGCGTCGTCCAAGTCATCGCGAACAGAGGC
GTGCAGGGCAGCCTGACCGGCATCACCATCGGCGTGGTGACCCCGATGGACAAGGTGTGG
CGCAGCCTCCAGGCGTTCGGCGACGTCGCCTTCGCCTACTCCTACTCCCTCATCCTGATC
GAGATCCAGGACACCATCCGGGCGCCGCCGCCGTCGGAGTCGACGGTGATGAAGCGCGCC
ACGGTGGTGAGCGTGGCGGTCACCACGCTCTTCTACATGCTGTGCGGCTGCATGGGGTAC
GCGGCGTTCGGCGACGGCGCGCCCGGGAACCTCCTCACGGGCTTCGGCTTCTACGAGCCC
TTCTGGCTCCTGGACGTGGCCAACGCCGCCATCGTGGTCCACCTGGTCGGCGCCTACCAG
GTCTACTGCCAGCCGCTGTTCGCCTTCGTGGAGAAGTGGGCCGCGCAGCGGTGGCCGGAC
TCGGCGTACATCACCGGGGAGGTCGAGGTCCCGCTCCCGCTCCCGGCGAGCCGGCGGCGG
TGCTGCAAGGTGAACCTGTTCCGGGCGACGTGGCGGACGGCGTTCGTCGTGGCCACGACG
GTCGTGTCCATGCTGCTGCCCTTCTTCAACGACGTGGTGGGCTTCCTGGGCGCGCTCGGC
TTCTGGCCGCTCACCGTCTACTTCCCCGTCGAGATGTACGTGGTGCAGAAGAAGGTGCCG
CGGTGGAGCTCCCGGTGGGTGTGCCTGCAGATGCTCAGCCTCGGCTGCCTCGTCATCTCC
ATCGCCGCCGCAGCCGGGTCCATCGCCGGCATCGCGTCCGACCTCAAAGTCTACCGCCCG
TTCAAGTCCTACTGATCAGATTCACGGCCTACGGGAGACGCAGCAGCATGTGGTATATAG
GCATATACTAGCAACCATGTTCGTGAGTTGCAACTCATAAGTACTTAAATCAGACTCTGC
ATCATTGCTAAACGCGAGTTTTTTTAACTTGTATACGCATGATTCATGAGTCCCAATTAC
ATATGAAAAGGATGCAACACAATATATATTGAAATATAAAAGATCTCGTACCGATAGTCG