Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d042575_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:3:172363031:172366732:1 gene:Zm00001d042575 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase RIO2
Sequence	ATGAAGCTTGACGTGAATGCCCTTCGCTACCTCGCCAAGGACGACTTCCGTGTCCTCACC GCCGTCGAGATGGGCATGCGCAACCATGAGATTGTTCCAGTAGAACTTATTGACAGGATT GCCAGATTGAAGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAGGAACAAGCTG GTGCATCATGGTGCCACTAAATACGATGGATATCGGCTCACCTATCTGGGATATGACTTC CTTGCCATCAAGACTTTGGTTAATCGAGGAGTTTTTGCTTCAGTTGGCCGCCAGATTGGT GTTGGAAAGGAGTCAGATATATTTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATG AAGCTTCATAGGTTGGGCAGGACATCTTTTAGAGCTGTGAAATCTAAGCGTGACTATCTA AGGCACCGAAGGAGCTTTAATTGGCTGTATCTCTCACGACTCGCAGCCTTGAAGGAATTT GCCTTTATGAAGGCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAAC CGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTTGTTCAAGTGAAAAAGTTA CAAAATCCGGATGATGTTTTTGACTCAATTCTTGGTCTTATCGTTCGTTTGGCTGAGCAT GGACTCATACACTGTGACTTTAATGAGTTCAATATCATGATTGACGATGATGAAAAAATT ACAGTGATTGACTTTCCGCAGATGGTGTCTGTTTCTCACCGTAATGCCCAAATGTTTTTT GACCGAGACATTGAATGCATCTACAAGTTCTTTAACAAAAGGTTCAATCTGAGGTCAGTG AAAAATGAAGAACAAGCTGGATCTGAAAATGATGATGAAGGGAACAGCAGACCTTCCTTT TTGTCCGTGGAAAAGGGTGCTGGTTCCTTGGACAAGGAACTAGCTGCCAGTGGATTTACC AGGAAAGAGAAAGTGGATATGGATAAGGTTGTTTTCCGGCTTAGTTCTCAGGTACCGTTT TTTTGGCAAACTTTCTTACAGTACATCGAGGAAGTTGTTGAAGGGCATGATTCCAGCTCA GATGATGATAATGATGAGGACAGTTCCGATGAGCCTGATTGTGATCTTACCCCAAGTGAT TCAGACGCGCCTGGAACTTTTTCTGAAGAGCATGGAACAAGTTGTAGCGGCGAGAACAGA TTGGAAATTCCTCCCTCGGATGGCAATGGAGTGGTTATGGCACCGCTCGAATCTGGGATC AAGACGTTTTCCATGGAAGATGATGATAACGATGATGGCTCGTCAGAGGATGCTGATGAA GAAGAAGATGCTGAGCTCACGAAACAATTGAACAAGCAAAGGAGAAAAGCAATCGCAGCT GCCCATGGGCGGAGAAGACCAACGTCATCCAGGAACGCCTACAAGGACAAGGGTAAGGGC ACCATGAACTCCAAGATGCAGAGGCAGGCGTGCAACTGGTGA

Peptide Sequence

PEP ID	Zm00001d042575_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:3:172363031:172366732:1 gene:Zm00001d042575 transcript:Zm00001d042575_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase RIO2
Sequence	MKLDVNALRYLAKDDFRVLTAVEMGMRNHEIVPVELIDRIARLKHGGTYKVLRNLLRNKL VHHGATKYDGYRLTYLGYDFLAIKTLVNRGVFASVGRQIGVGKESDIFEVATDDGTVLAM KLHRLGRTSFRAVKSKRDYLRHRRSFNWLYLSRLAALKEFAFMKALGDHGFPVPTAVDCN RHCVIMSLVQGYPLVQVKKLQNPDDVFDSILGLIVRLAEHGLIHCDFNEFNIMIDDDEKI TVIDFPQMVSVSHRNAQMFFDRDIECIYKFFNKRFNLRSVKNEEQAGSENDDEGNSRPSF LSVEKGAGSLDKELAASGFTRKEKVDMDKVVFRLSSQVPFFWQTFLQYIEEVVEGHDSSS DDDNDEDSSDEPDCDLTPSDSDAPGTFSEEHGTSCSGENRLEIPPSDGNGVVMAPLESGI KTFSMEDDDNDDGSSEDADEEEDAELTKQLNKQRRKAIAAAHGRRRPTSSRNAYKDKGKG TMNSKMQRQACNW

Transcript Sequence

Transcript ID	Zm00001d042575_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:172363031:172366732:1 gene:Zm00001d042575 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase RIO2
Sequence	GATAAATTTAATATTTTAAAATTAATATGTACGAAATTGGATGCTTAGATTTTCTTATGT TATCAAGCACATTATTATAAGTAAGAATAAAACTTTGCTAGTGTCATATTCTATGGTTTG ATGTGTACTAGTCTGCGTACATGTGTTTATCGTTTAAAAATAATTGTTTTGGTAAATTTT TATCGTTATCGATGCACTTTTGATTGTATACTTTCGTTATCGATATTATTGAAATATGGA TACCGTTTTCGTTTTCGACAATATCGTATCGTTTTCGTTTCCGTCAAAATAATTTGAAAG TGAAAGTGGTGGAGTCTTTTTCCGATCGTTTTCGACCGTTTTCAGCCTTACCCAAACCCT TATTTAAAGCTATATGGCTATTTGATGTTTGCTTACTTCGTATTTCTTGTAAAAACCATC GGTCGGTCCGCCCCTGGTAGCAGCAGCAGGAGGACACCATGAAGCTTGACGTGAATGCCC TTCGCTACCTCGCCAAGGACGACTTCCGTGTCCTCACCGCCGTCGAGATGGGCATGCGCA ACCATGAGATTGTTCCAGTAGAACTTATTGACAGGATTGCCAGATTGAAGCATGGAGGCA CATACAAAGTGCTGAGGAATCTTTTGAGGAACAAGCTGGTGCATCATGGTGCCACTAAAT ACGATGGATATCGGCTCACCTATCTGGGATATGACTTCCTTGCCATCAAGACTTTGGTTA ATCGAGGAGTTTTTGCTTCAGTTGGCCGCCAGATTGGTGTTGGAAAGGAGTCAGATATAT TTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATGAAGCTTCATAGGTTGGGCAGGA CATCTTTTAGAGCTGTGAAATCTAAGCGTGACTATCTAAGGCACCGAAGGAGCTTTAATT GGCTGTATCTCTCACGACTCGCAGCCTTGAAGGAATTTGCCTTTATGAAGGCTTTAGGAG ATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCAC TTGTGCAGGGATATCCTCTTGTTCAAGTGAAAAAGTTACAAAATCCGGATGATGTTTTTG ACTCAATTCTTGGTCTTATCGTTCGTTTGGCTGAGCATGGACTCATACACTGTGACTTTA ATGAGTTCAATATCATGATTGACGATGATGAAAAAATTACAGTGATTGACTTTCCGCAGA TGGTGTCTGTTTCTCACCGTAATGCCCAAATGTTTTTTGACCGAGACATTGAATGCATCT ACAAGTTCTTTAACAAAAGGTTCAATCTGAGGTCAGTGAAAAATGAAGAACAAGCTGGAT CTGAAAATGATGATGAAGGGAACAGCAGACCTTCCTTTTTGTCCGTGGAAAAGGGTGCTG GTTCCTTGGACAAGGAACTAGCTGCCAGTGGATTTACCAGGAAAGAGAAAGTGGATATGG ATAAGGTTGTTTTCCGGCTTAGTTCTCAGGTACCGTTTTTTTGGCAAACTTTCTTACAGT ACATCGAGGAAGTTGTTGAAGGGCATGATTCCAGCTCAGATGATGATAATGATGAGGACA GTTCCGATGAGCCTGATTGTGATCTTACCCCAAGTGATTCAGACGCGCCTGGAACTTTTT CTGAAGAGCATGGAACAAGTTGTAGCGGCGAGAACAGATTGGAAATTCCTCCCTCGGATG GCAATGGAGTGGTTATGGCACCGCTCGAATCTGGGATCAAGACGTTTTCCATGGAAGATG ATGATAACGATGATGGCTCGTCAGAGGATGCTGATGAAGAAGAAGATGCTGAGCTCACGA AACAATTGAACAAGCAAAGGAGAAAAGCAATCGCAGCTGCCCATGGGCGGAGAAGACCAA CGTCATCCAGGAACGCCTACAAGGACAAGGGTAAGGGCACCATGAACTCCAAGATGCAGA GGCAGGCGTGCAACTGGTGATGGTTGAGTGCCTCTTGCGGCAGTAAATAGATTAGGCGCA GGGTTTTGTGTGGTTGTATAACCGTGGGACCCTTTACTAGAATCAACTCCGGCTTTATAT TTTTACTAGGTGAGTAATCGTGCGTCGCAACGAGAACACATAATATTACGAGAACTTATA TATAAAATGTCGCAACGAAAACATATAATATTATGAGAACTTATATACAAAA