Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042556_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:171674280:171676629:-1 gene:Zm00001d042556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exopolygalacturonase clone GBGE184
Sequence

ATGGCCATGCCCAAGCCCGTCCTGAGCCTGCTCGTGCACCTACACGCCGCCGTCCTGTTC
CTTCCCGCCCCGGCCGGCGGCGCGGTCTACAACGTGCTGCGCTACGGCGCGCGCCCCGAC
GGCGTGACGGACGCGGCGGGGCCCTTCCTCCGCGCGTGGGCGGACGCCTGCCGCTCGCCC
CTCCCGGCCGCCGTGTACGTGCCGCCAGGGAGGTACCTGGTGCGGAGCGCCACGTTCACC
GGCCCGTGCCACACCCGCGCCGTGACGTTCGCCGTCGCCGGCACGGTCGTCGCCCCCGCG
GCCTACGGCGCGCGCGGCTCGTCGGGGAGGTGGATCACGTTCGAGAACATGGACGGCCTC
GTCGTCGCCGGCGGCGGCACGCTGGACGGCCGCGGCAGGGCACTCTGGGCCTGCAGACAG
CGCGGGCAGCGCGACTGTCCGACCCCCACGTCCACTCTGACGATCGCCAACTCCAAGGAC
GTGGTGGTGGCCGGGCTCCGGTCGGTGGACAGCGAGCTGTTCCACGTGGTGGTGCTGCAG
TGCCACGGCGTGACGGTGCGCGGGGTGACGGTGGAGGCGCCGGCGGACAGCCCCAACACC
GACGGCATCCACCTGCACATGTCCACCCACGTGTCGGTGTACGACGCCAGGATCAGCACC
GGCGACGACTGCATCTCCATCGGCCCCGGCAACTCTCACCTCTGGATCGAGCGCGTCGCC
TGCGGCCCCGGCCACGGCATCAGCATCGGGAGCCTGGGCAAGCAGCAGGGCACGGAGGTG
GAGGCGGTGCAGAACGTGACGGTGAAGACGACGTGGTTCACCGGCACCATGAACGGGCTG
CGGATCAAGACGTGGGGCGGCTCCAAGCGCGGCTTCGTCACGGGCGTCACCTTCGCCGAC
TCCACCATGTCCGGCGTGGACAACCCCATCATCATCGACCAGAACTACTGCCCCACCAGC
AGCGGCTGCCCCGGCGCCGGCCGGAGCTCCAGCATCAGGATCAGCGACGTGCGGTACGTG
GGCATCCGGGGCTCGTCGGCCACGCCGGTGGCCGTCAACTTCGACTGCAGCCGGAGCTAC
CCCTGCAGTGGCATCAGCCTGCAGGACGTGGCGCTGACGTACCAGAACCGGGCCGCCGCC
AAGTCCTACTGCCGGAACGTGCAGGGGACCGCGCTCGGCCTCGTGCTGCCGCCGAGCTGC
CTCTGA

Peptide Sequence

PEP ID

Zm00001d042556_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:171674280:171676629:-1 gene:Zm00001d042556 transcript:Zm00001d042556_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exopolygalacturonase clone GBGE184
Sequence

MAMPKPVLSLLVHLHAAVLFLPAPAGGAVYNVLRYGARPDGVTDAAGPFLRAWADACRSP
LPAAVYVPPGRYLVRSATFTGPCHTRAVTFAVAGTVVAPAAYGARGSSGRWITFENMDGL
VVAGGGTLDGRGRALWACRQRGQRDCPTPTSTLTIANSKDVVVAGLRSVDSELFHVVVLQ
CHGVTVRGVTVEAPADSPNTDGIHLHMSTHVSVYDARISTGDDCISIGPGNSHLWIERVA
CGPGHGISIGSLGKQQGTEVEAVQNVTVKTTWFTGTMNGLRIKTWGGSKRGFVTGVTFAD
STMSGVDNPIIIDQNYCPTSSGCPGAGRSSSIRISDVRYVGIRGSSATPVAVNFDCSRSY
PCSGISLQDVALTYQNRAAAKSYCRNVQGTALGLVLPPSCL

Transcript Sequence

Transcript ID

Zm00001d042556_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:171674280:171676629:-1 gene:Zm00001d042556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exopolygalacturonase clone GBGE184
Sequence

GTCGAACACATACCTAATTATCACCTGTAAGCCAGCTGAACCACATCTCGTCGTGCACAT
CCGGAGCCCGGGAACACACACACACATTGTCATGGCCATGCCCAAGCCCGTCCTGAGCCT
GCTCGTGCACCTACACGCCGCCGTCCTGTTCCTTCCCGCCCCGGCCGGCGGCGCGGTCTA
CAACGTGCTGCGCTACGGCGCGCGCCCCGACGGCGTGACGGACGCGGCGGGGCCCTTCCT
CCGCGCGTGGGCGGACGCCTGCCGCTCGCCCCTCCCGGCCGCCGTGTACGTGCCGCCAGG
GAGGTACCTGGTGCGGAGCGCCACGTTCACCGGCCCGTGCCACACCCGCGCCGTGACGTT
CGCCGTCGCCGGCACGGTCGTCGCCCCCGCGGCCTACGGCGCGCGCGGCTCGTCGGGGAG
GTGGATCACGTTCGAGAACATGGACGGCCTCGTCGTCGCCGGCGGCGGCACGCTGGACGG
CCGCGGCAGGGCACTCTGGGCCTGCAGACAGCGCGGGCAGCGCGACTGTCCGACCCCCAC
GTCCACTCTGACGATCGCCAACTCCAAGGACGTGGTGGTGGCCGGGCTCCGGTCGGTGGA
CAGCGAGCTGTTCCACGTGGTGGTGCTGCAGTGCCACGGCGTGACGGTGCGCGGGGTGAC
GGTGGAGGCGCCGGCGGACAGCCCCAACACCGACGGCATCCACCTGCACATGTCCACCCA
CGTGTCGGTGTACGACGCCAGGATCAGCACCGGCGACGACTGCATCTCCATCGGCCCCGG
CAACTCTCACCTCTGGATCGAGCGCGTCGCCTGCGGCCCCGGCCACGGCATCAGCATCGG
GAGCCTGGGCAAGCAGCAGGGCACGGAGGTGGAGGCGGTGCAGAACGTGACGGTGAAGAC
GACGTGGTTCACCGGCACCATGAACGGGCTGCGGATCAAGACGTGGGGCGGCTCCAAGCG
CGGCTTCGTCACGGGCGTCACCTTCGCCGACTCCACCATGTCCGGCGTGGACAACCCCAT
CATCATCGACCAGAACTACTGCCCCACCAGCAGCGGCTGCCCCGGCGCCGGCCGGAGCTC
CAGCATCAGGATCAGCGACGTGCGGTACGTGGGCATCCGGGGCTCGTCGGCCACGCCGGT
GGCCGTCAACTTCGACTGCAGCCGGAGCTACCCCTGCAGTGGCATCAGCCTGCAGGACGT
GGCGCTGACGTACCAGAACCGGGCCGCCGCCAAGTCCTACTGCCGGAACGTGCAGGGGAC
CGCGCTCGGCCTCGTGCTGCCGCCGAGCTGCCTCTGATCAGACGATCGACCTTGCAACTT
ACATTGCCGGCCGGACGCAGCAGTTAGCTGCATGCGTTGTCACGTGTATATAGATGCATA
TGTCGAGTGTATTATGTACGGAGTATGTGGGGAGTGCTTACTGCTTAGACTAGGAGAACA
TTACGAGCTTCTTCTGACAGTAGATGGTTATATAGTCGATATCTGTTGGTTCTTTTCTTT
AACCCTTCGCCTTTTTCGCAGCACGATTATTGTATGAGCAAGTTTTTTAAATAA