Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042553_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:171640917:171642870:1 gene:Zm00001d042553 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin acetylesterase 5
Sequence

ATGGGAAAAGGAATGGACGCCGCTGAACAGGCCTTGCTCGCAGGCTGCTCTGCTGGCGGT
CTAGCTACGCTACTGCACTGCGACGATTTCCGCGCGAGGTTTCCGCAGGAGGTCCCGGTC
AAATGCCTTCCTGATGGCGGATTCTTCCTGGACATAAAGGATTTATCAGGAGAAAGGCAC
ATGCGGTCGGTGTTCAGTGGAGTTGTTCAGCTTCAGAATGTTAGCGGAGTTCTGCCCAAG
CGCTGCCTGGCGAAGAAGGACCCAGCAGAGTGTTTCTTCCCCGCTGAACTTATCAAGAGC
ATCAGCACCCCCACGTTCATCGTGAACTCGGAATACGATTCTTGGCAGATCGCGAACGTT
GTCGCGCCCGACGGATCCTACACTGGAGACGCGTGGACGAGCTGCAGAGACAACATTCGG
AACTGCAGCTCCGAGCAGATGGACGTGCTGCATGGGTTCAGGGCGGAACTCATCAGGGAG
CTGAAGGTTGCCGAAGGTGAGCGGGAATGGGGGCTGTTCGTCGACTCGTGCTTCACGCAC
TGTCAGACCCAGTCGAGCGACTGGTGGCATTCGCCCACCTCCCCGAGGCTCGGTAATCAG
ACTGTTGCAGAGGCTGTTGGGGACTGGTACTTTGGTAGAAGGCGGGTAGTGAAGCAGGTC
GACTGCGAGTACCCTTGCAACCCCACGTGTAGCATTCAGTAG

Peptide Sequence

PEP ID

Zm00001d042553_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:171640917:171642870:1 gene:Zm00001d042553 transcript:Zm00001d042553_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin acetylesterase 5
Sequence

MGKGMDAAEQALLAGCSAGGLATLLHCDDFRARFPQEVPVKCLPDGGFFLDIKDLSGERH
MRSVFSGVVQLQNVSGVLPKRCLAKKDPAECFFPAELIKSISTPTFIVNSEYDSWQIANV
VAPDGSYTGDAWTSCRDNIRNCSSEQMDVLHGFRAELIRELKVAEGEREWGLFVDSCFTH
CQTQSSDWWHSPTSPRLGNQTVAEAVGDWYFGRRRVVKQVDCEYPCNPTCSIQ

Transcript Sequence

Transcript ID

Zm00001d042553_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:171640917:171642870:1 gene:Zm00001d042553 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin acetylesterase 5
Sequence

ATTGCGACGGGGCGTCATTTTCTGGGGACGCGGAGGGTGAAGCACAGGACGGAACTAAGC
TGTTCTTCAGAGGATCGCGCATCTGGGACGCAGTCGTCGATGAACTCATGGGAAAAGGAA
TGGACGCCGCTGAACAGGCCTTGCTCGCAGGCTGCTCTGCTGGCGGTCTAGCTACGCTAC
TGCACTGCGACGATTTCCGCGCGAGGTTTCCGCAGGAGGTCCCGGTCAAATGCCTTCCTG
ATGGCGGATTCTTCCTGGACATAAAGGATTTATCAGGAGAAAGGCACATGCGGTCGGTGT
TCAGTGGAGTTGTTCAGCTTCAGAATGTTAGCGGAGTTCTGCCCAAGCGCTGCCTGGCGA
AGAAGGACCCAGCAGAGTGTTTCTTCCCCGCTGAACTTATCAAGAGCATCAGCACCCCCA
CGTTCATCGTGAACTCGGAATACGATTCTTGGCAGATCGCGAACGTTGTCGCGCCCGACG
GATCCTACACTGGAGACGCGTGGACGAGCTGCAGAGACAACATTCGGAACTGCAGCTCCG
AGCAGATGGACGTGCTGCATGGGTTCAGGGCGGAACTCATCAGGGAGCTGAAGGTTGCCG
AAGGTGAGCGGGAATGGGGGCTGTTCGTCGACTCGTGCTTCACGCACTGTCAGACCCAGT
CGAGCGACTGGTGGCATTCGCCCACCTCCCCGAGGCTCGGTAATCAGACTGTTGCAGAGG
CTGTTGGGGACTGGTACTTTGGTAGAAGGCGGGTAGTGAAGCAGGTCGACTGCGAGTACC
CTTGCAACCCCACGTGTAGCATTCAGTAGCTGTGAGCTGGCTTCTTCTTCGTGACCGCCA
TTGCACCGAGCTGAGATTCATGGGAGTCCTTGTTTCCTCCACTCTCGTATTTGATTTGTC
GTTGTTAGAAAACCAGTTACATTTTAATCTAGAGAACGATACATAAATGTTACCG