Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042541_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:3:171421718:171425214:1 gene:Zm00001d042541 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase1 description: lipoxygenase2
Sequence

ATGTTCGGGAACATCGGAAAGATCCCCATCATCGGCGACCTGACGGGCAGCAACAAGAAT
GCGCACCTCAAGGGCAACGTGGTGCTCGTGCGCAAGACCGTGCTCGGCTTGGACGTCACC
AGCATCGCCGGCTCCCTCCTCGACGGCATCGGCGAGTTCCTCAAGCAGTTCCCACTCGAG
CTCGTCAAGGATGTCCTCCCGGTCGGCGGCGACTACCTCCTCAAGCTCCCCATGCCGCAG
ATCATCAAAGAGGACAAGACAGGTTGGATGACAGATGAGGAGTTTGGACGGGAGATTCTC
GCCGGCGTGAACCCCATGCTCGTCAAGCGTCTCACGGAGTTCCCTCCGAGGAGCAGTCTT
GACCCGAGCAAGTACGGCGACCACACCAGCACCATCAGGGAGGCGGACCTCGAGAACAAG
CTCGAGGGCCTGACGGTGCAGCAGGCGCTGCACGGCAACCGGCTCTACATCCTGGACCAC
CACGACAACTTCATGCCGTTCCTGGTCAGGGTGAACAGCCTGGAGGGCAACTTCATCTAC
GCCACCAGGACCGTGCTGTTCCTGCGCGGCGACGGCACGCTGGTGCCGGTGGCCATCGAG
CTGAGCCTGCCCGAGCTCCGGGACGGCCTGACCACCGCCAAGAGCACCGTGTACACGCCC
AAGTCGACCACCGGCGCGGAGGCGTGGGTGTGGCACCTGGCCAAGGCCTACGCCAACGTG
AACGACTACTGCTGGCACCAGCTCATCAGCCACTGGCTCAACACCCACGCCGTGATGGAG
CCGTTCGTGATCGCCACCAACCGGCAGCTCAGCGTGACGCACCCCGTGCACAAGCTCCTC
CTGCCGCACTACCGTGACACCATGAACATCAACTCCAACGCGCGCCAGATGCTCGTCAAC
GCCGGCGGCATCTTCGAGACCACCGTCTTCCCGCGCCAGTACGCGTTCGAGATGTCCTCC
GTCATCTACAAGGACTGGAACTTCACAGAGCAGGCTCTCCCTGACGACCTAATCAAGAGA
GGCATGGCGGTCGCAGACCCGTCGAGCCCGTACAAGGTACGGCTGCTGGTGGAGGACTAC
CCGTACGCGTCGGACGGGCTGGCCATCTGGCACGCCATCGAGCAGTGGGTGACGGAGTAC
CTCGCCGTCTACTACCCCAACGACGGCGTGCTGCGGGCGGACGTGGAGCTGCAGGCGTGG
TGGAAGGAGGCGCGCGAGGTCGGGCACGCCGACCTCAAGGACGCGCCCTGGTGGCCCAAG
ATGCAGACGGTGGCCGAGCTGGTCAAGGCCTGCACCACCATCATCTGGATCGCGTCGGCG
CTCCACGCGGCCGTCAACTTCGGGCAGTACCCGTACGCCGGGTACCTCCCGAACCGCCCG
TCCGTCAGCCGGAAGCCGATGCCGGCGCCGGGCAGCGACGAGTACGCGGAGCTGGAGCGC
AAGCCGGAGAAGGTGTTCGTGCGCACCATCACCAGCCAGTTCCAGGCCCTCGTCGGCATC
TCGCTGCTGGAGATCCTGTCCAGCCACTCCTCCGACGAGGTGTACCTCGGCCAGCGCGAC
ACCAAGGAGTGGACGTCGGACGCCAAGGCGCAGGAGGCGTTCAAGCGGTTCGGCGCGCGG
CTGACCGAGATCGAGAAACGCGTCGTCACCATGAACGCGGACCCTCGCCTCAAGAACCGC
AACGGCCCGGCCGAGTTCCCCTACACGCTGCTCTACCCCAACACCTCCGACACGAAGGGC
GACGCCGCCGGCATCACCGCCAAGGGCATTCCAAACAGCATCTCCATTTGA

Peptide Sequence

PEP ID

Zm00001d042541_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:3:171421718:171425214:1 gene:Zm00001d042541 transcript:Zm00001d042541_T006 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase1 description: lipoxygenase2
Sequence

MFGNIGKIPIIGDLTGSNKNAHLKGNVVLVRKTVLGLDVTSIAGSLLDGIGEFLKQFPLE
LVKDVLPVGGDYLLKLPMPQIIKEDKTGWMTDEEFGREILAGVNPMLVKRLTEFPPRSSL
DPSKYGDHTSTIREADLENKLEGLTVQQALHGNRLYILDHHDNFMPFLVRVNSLEGNFIY
ATRTVLFLRGDGTLVPVAIELSLPELRDGLTTAKSTVYTPKSTTGAEAWVWHLAKAYANV
NDYCWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVHKLLLPHYRDTMNINSNARQMLVN
AGGIFETTVFPRQYAFEMSSVIYKDWNFTEQALPDDLIKRGMAVADPSSPYKVRLLVEDY
PYASDGLAIWHAIEQWVTEYLAVYYPNDGVLRADVELQAWWKEAREVGHADLKDAPWWPK
MQTVAELVKACTTIIWIASALHAAVNFGQYPYAGYLPNRPSVSRKPMPAPGSDEYAELER
KPEKVFVRTITSQFQALVGISLLEILSSHSSDEVYLGQRDTKEWTSDAKAQEAFKRFGAR
LTEIEKRVVTMNADPRLKNRNGPAEFPYTLLYPNTSDTKGDAAGITAKGIPNSISI

Transcript Sequence

Transcript ID

Zm00001d042541_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:171421718:171425214:1 gene:Zm00001d042541 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase1 description: lipoxygenase2
Sequence

TCACCGACTCACACTCACACAGCAAATACCCCACAAGGCCACTCCAAAGACCTAGTAGTG
GAACCGAAGATGTTCGGGAACATCGGAAAGATCCCCATCATCGGCGACCTGACGGGCAGC
AACAAGAATGCGCACCTCAAGGGCAACGTGGTGCTCGTGCGCAAGACCGTGCTCGGCTTG
GACGTCACCAGCATCGCCGGCTCCCTCCTCGACGGCATCGGCGAGTTCCTCAAGCAGTTC
CCACTCGAGCTCGTCAAGGATGTCCTCCCGGTCGGCGGCGACTACCTCCTCAAGCTCCCC
ATGCCGCAGATCATCAAAGAGGACAAGACAGGTTGGATGACAGATGAGGAGTTTGGACGG
GAGATTCTCGCCGGCGTGAACCCCATGCTCGTCAAGCGTCTCACGGAGTTCCCTCCGAGG
AGCAGTCTTGACCCGAGCAAGTACGGCGACCACACCAGCACCATCAGGGAGGCGGACCTC
GAGAACAAGCTCGAGGGCCTGACGGTGCAGCAGGCGCTGCACGGCAACCGGCTCTACATC
CTGGACCACCACGACAACTTCATGCCGTTCCTGGTCAGGGTGAACAGCCTGGAGGGCAAC
TTCATCTACGCCACCAGGACCGTGCTGTTCCTGCGCGGCGACGGCACGCTGGTGCCGGTG
GCCATCGAGCTGAGCCTGCCCGAGCTCCGGGACGGCCTGACCACCGCCAAGAGCACCGTG
TACACGCCCAAGTCGACCACCGGCGCGGAGGCGTGGGTGTGGCACCTGGCCAAGGCCTAC
GCCAACGTGAACGACTACTGCTGGCACCAGCTCATCAGCCACTGGCTCAACACCCACGCC
GTGATGGAGCCGTTCGTGATCGCCACCAACCGGCAGCTCAGCGTGACGCACCCCGTGCAC
AAGCTCCTCCTGCCGCACTACCGTGACACCATGAACATCAACTCCAACGCGCGCCAGATG
CTCGTCAACGCCGGCGGCATCTTCGAGACCACCGTCTTCCCGCGCCAGTACGCGTTCGAG
ATGTCCTCCGTCATCTACAAGGACTGGAACTTCACAGAGCAGGCTCTCCCTGACGACCTA
ATCAAGAGAGGCATGGCGGTCGCAGACCCGTCGAGCCCGTACAAGGTACGGCTGCTGGTG
GAGGACTACCCGTACGCGTCGGACGGGCTGGCCATCTGGCACGCCATCGAGCAGTGGGTG
ACGGAGTACCTCGCCGTCTACTACCCCAACGACGGCGTGCTGCGGGCGGACGTGGAGCTG
CAGGCGTGGTGGAAGGAGGCGCGCGAGGTCGGGCACGCCGACCTCAAGGACGCGCCCTGG
TGGCCCAAGATGCAGACGGTGGCCGAGCTGGTCAAGGCCTGCACCACCATCATCTGGATC
GCGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCGTACGCCGGGTACCTCCCG
AACCGCCCGTCCGTCAGCCGGAAGCCGATGCCGGCGCCGGGCAGCGACGAGTACGCGGAG
CTGGAGCGCAAGCCGGAGAAGGTGTTCGTGCGCACCATCACCAGCCAGTTCCAGGCCCTC
GTCGGCATCTCGCTGCTGGAGATCCTGTCCAGCCACTCCTCCGACGAGGTGTACCTCGGC
CAGCGCGACACCAAGGAGTGGACGTCGGACGCCAAGGCGCAGGAGGCGTTCAAGCGGTTC
GGCGCGCGGCTGACCGAGATCGAGAAACGCGTCGTCACCATGAACGCGGACCCTCGCCTC
AAGAACCGCAACGGCCCGGCCGAGTTCCCCTACACGCTGCTCTACCCCAACACCTCCGAC
ACGAAGGGCGACGCCGCCGGCATCACCGCCAAGGGCATTCCAAACAGCATCTCCATTTGA
GTTCTGTC