Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042540_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:3:171278363:171281078:1 gene:Zm00001d042540 gene_biotype:protein_coding transcript_biotype:protein_coding description:Linoleate 9S-lipoxygenase 1
Sequence

ATGCCGGCGGCGCTGAAGCCTTACCGCGACGACGAGCTCCGCAACCTGAGGGGCGACGAC
CAGCAGGGCCCGTACCAGGAGCACGACCGCGTCTACCGCTACGACGTCTACAACGACCTC
GGCAACCCCGACGCCAAAAACCCGCGCCCCGTCCTCGGCGGCTCCAAGCACCACCCCTAC
CCGCGCCGCGGCCGCACGGGCCGGAAGCCGACGCAGACAGACCCCAACAGCGAGAGCAGG
CTGACGCTGACCGACGGCGACGTCTACGTGCCGCGCGACGAGCGCTTCGGCCACATCAAG
AACTCCGACGAGTTCCGCAAGCAGTTCCCGCTACAGATGGTCAAGGACCTCATGCCCGCC
GGCGGCGACTACGTCCTCAAGCTCCCCATGCCCAAAATCATCAAAGAGGACAAGAAAGCT
TGGATGAGTGACGAGGAGTTCGCAAGGGAGACCCTCGCCGGCGTGAACCCCTTGATCATC
AGGCGTCTCACGGAGTTCCCTCCGAAAAGCACCCTTGATCCGAGCAAGTACGGCGACCAG
ACGAGCACCATCACGGAGGCGCACATCGCGGGGAGCCTGGAGGGCCTCACCGTGCAGCAG
GCGCTGGACAGCAACCGGCTCTACATCCTGGACCACCACGACCACTACATGCCGTTCCTG
ATCGAGGTCAACAGCCTGAACGACAACTTCATCTACGCCACCAGGACGCTCCTGTTCCTG
CGCGGCGACGGCACGCTCGCGCCGGTGGCCATCGAGATGAGCCTCCCCGAGCTCCGGGAC
GGCATCACGGCCGCGAAGAGCACGGTGTACACGCCGGCGCCGCCGACGGCCGGCGCGGAG
GCGTGGGTGTGGCGCCTGGCCAAGGCCTACGTGAACGTGAACGACTACTGCTGGCACCAG
GGCATCAGCCACTGGCTCAACACGCACGCGGTGATGGAGCCGTTCGTGATCGCCACCAAC
CGGCAGCTCAGCGTGACGCACCCCGTGCACAGGCTGCTGCTGCCGCACTACCGCGACACC
ATGAACATCAACGCCCTCGCGCGCCAGAAGCTCATCAACGCCGGCGGCATCTTCGAGATG
ACCGTCTTCCCGCGCAAGTACGCCATCGAGATCTCCTCCAAAGTCTACGGCAGCTGGAAC
TTCACCGAGCAGGCCCTCCCCGACGACCTCATCAAGCGAGGCATGGCCGTTCCAGATCCG
TCGAGCCCCTACAAGGTGCGGCTGCTGATCGAGGACTACCCGTACGCCTCGGACGGGCTG
GCCGTGTGGCACGCCATCGAGCAGTGGGTGACGGAGTACCTGGCCATCTACTACCCCAAC
GACGGCGTGCTGCAGGCCGACGTGGAGCTGCAGGCGTGGTGGAAGGAGGCGCGCGAGGTC
GGGCACGCCGACCTCAAGGACGAGCACTGGTGGCCCAAGATGCAGACGGTGCCGGAGCTC
GTGAAGGCCTGCACCACCATCATCTGGATCGCGTCGGCGCTACACGCTGCCGTCAACTTC
GGGCAGTACCCGTACTGCGGGTACCACCCGAACCGGCCGTCCGTGAGCCGGCGGCCCATG
CCGGTGCCGGGCTCCGACGCGTACAAGGAGCTGGAGAAGAACCCGGAGAAGTTCTTCGTG
CGCTCCATCACCGCCCAATTCCAGGCCGTCGTCGGCATCTCGCTGCTGGAGATCCTGTCC
AGCCACTCCTCCGACGAGGTGTACCTCGGCCAGCGCGACACCAAGGAGTGGACGTCGGAC
GCCAAGGCGCAGGAGGCGTTCAAGCGGTTCGGCGCGCGGCTGACCGAGATCGAGAAACGC
GTGGAGGCCATGAACAAGGACCCGCGCTTCAAGAACCGCTACAGCGCGGCCCAGTTCCCC
TACACCCTGCTCTTCCCCAACACCTCCGACAAGGGCGATAACACCGGCGTCACCGCCAAG
GGCATCCCCAACAGCATTTCCATCTGA

Peptide Sequence

PEP ID

Zm00001d042540_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:3:171278363:171281078:1 gene:Zm00001d042540 transcript:Zm00001d042540_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:Linoleate 9S-lipoxygenase 1
Sequence

MPAALKPYRDDELRNLRGDDQQGPYQEHDRVYRYDVYNDLGNPDAKNPRPVLGGSKHHPY
PRRGRTGRKPTQTDPNSESRLTLTDGDVYVPRDERFGHIKNSDEFRKQFPLQMVKDLMPA
GGDYVLKLPMPKIIKEDKKAWMSDEEFARETLAGVNPLIIRRLTEFPPKSTLDPSKYGDQ
TSTITEAHIAGSLEGLTVQQALDSNRLYILDHHDHYMPFLIEVNSLNDNFIYATRTLLFL
RGDGTLAPVAIEMSLPELRDGITAAKSTVYTPAPPTAGAEAWVWRLAKAYVNVNDYCWHQ
GISHWLNTHAVMEPFVIATNRQLSVTHPVHRLLLPHYRDTMNINALARQKLINAGGIFEM
TVFPRKYAIEISSKVYGSWNFTEQALPDDLIKRGMAVPDPSSPYKVRLLIEDYPYASDGL
AVWHAIEQWVTEYLAIYYPNDGVLQADVELQAWWKEAREVGHADLKDEHWWPKMQTVPEL
VKACTTIIWIASALHAAVNFGQYPYCGYHPNRPSVSRRPMPVPGSDAYKELEKNPEKFFV
RSITAQFQAVVGISLLEILSSHSSDEVYLGQRDTKEWTSDAKAQEAFKRFGARLTEIEKR
VEAMNKDPRFKNRYSAAQFPYTLLFPNTSDKGDNTGVTAKGIPNSISI

Transcript Sequence

Transcript ID

Zm00001d042540_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:171278363:171281078:1 gene:Zm00001d042540 gene_biotype:protein_coding transcript_biotype:protein_coding description:Linoleate 9S-lipoxygenase 1
Sequence

GGAGAAGCACGGCGTCCCGGGCGCCATCATCGTGAAGAACAACCACGCCTCCGAGTTCTT
CCTCAAGACCATCACCATCGACGACGTCCCCGGCCACGGCCCCATCGTCTTCGTCGCCAA
CTCATGGGTGTACCCGCAGTACAAGTACCGCTACAACCGCGTCTTCTTCTCCAACGACAC
GTACCTCCCCAGCCAGATGCCGGCGGCGCTGAAGCCTTACCGCGACGACGAGCTCCGCAA
CCTGAGGGGCGACGACCAGCAGGGCCCGTACCAGGAGCACGACCGCGTCTACCGCTACGA
CGTCTACAACGACCTCGGCAACCCCGACGCCAAAAACCCGCGCCCCGTCCTCGGCGGCTC
CAAGCACCACCCCTACCCGCGCCGCGGCCGCACGGGCCGGAAGCCGACGCAGACAGACCC
CAACAGCGAGAGCAGGCTGACGCTGACCGACGGCGACGTCTACGTGCCGCGCGACGAGCG
CTTCGGCCACATCAAGAACTCCGACGAGTTCCGCAAGCAGTTCCCGCTACAGATGGTCAA
GGACCTCATGCCCGCCGGCGGCGACTACGTCCTCAAGCTCCCCATGCCCAAAATCATCAA
AGAGGACAAGAAAGCTTGGATGAGTGACGAGGAGTTCGCAAGGGAGACCCTCGCCGGCGT
GAACCCCTTGATCATCAGGCGTCTCACGGAGTTCCCTCCGAAAAGCACCCTTGATCCGAG
CAAGTACGGCGACCAGACGAGCACCATCACGGAGGCGCACATCGCGGGGAGCCTGGAGGG
CCTCACCGTGCAGCAGGCGCTGGACAGCAACCGGCTCTACATCCTGGACCACCACGACCA
CTACATGCCGTTCCTGATCGAGGTCAACAGCCTGAACGACAACTTCATCTACGCCACCAG
GACGCTCCTGTTCCTGCGCGGCGACGGCACGCTCGCGCCGGTGGCCATCGAGATGAGCCT
CCCCGAGCTCCGGGACGGCATCACGGCCGCGAAGAGCACGGTGTACACGCCGGCGCCGCC
GACGGCCGGCGCGGAGGCGTGGGTGTGGCGCCTGGCCAAGGCCTACGTGAACGTGAACGA
CTACTGCTGGCACCAGGGCATCAGCCACTGGCTCAACACGCACGCGGTGATGGAGCCGTT
CGTGATCGCCACCAACCGGCAGCTCAGCGTGACGCACCCCGTGCACAGGCTGCTGCTGCC
GCACTACCGCGACACCATGAACATCAACGCCCTCGCGCGCCAGAAGCTCATCAACGCCGG
CGGCATCTTCGAGATGACCGTCTTCCCGCGCAAGTACGCCATCGAGATCTCCTCCAAAGT
CTACGGCAGCTGGAACTTCACCGAGCAGGCCCTCCCCGACGACCTCATCAAGCGAGGCAT
GGCCGTTCCAGATCCGTCGAGCCCCTACAAGGTGCGGCTGCTGATCGAGGACTACCCGTA
CGCCTCGGACGGGCTGGCCGTGTGGCACGCCATCGAGCAGTGGGTGACGGAGTACCTGGC
CATCTACTACCCCAACGACGGCGTGCTGCAGGCCGACGTGGAGCTGCAGGCGTGGTGGAA
GGAGGCGCGCGAGGTCGGGCACGCCGACCTCAAGGACGAGCACTGGTGGCCCAAGATGCA
GACGGTGCCGGAGCTCGTGAAGGCCTGCACCACCATCATCTGGATCGCGTCGGCGCTACA
CGCTGCCGTCAACTTCGGGCAGTACCCGTACTGCGGGTACCACCCGAACCGGCCGTCCGT
GAGCCGGCGGCCCATGCCGGTGCCGGGCTCCGACGCGTACAAGGAGCTGGAGAAGAACCC
GGAGAAGTTCTTCGTGCGCTCCATCACCGCCCAATTCCAGGCCGTCGTCGGCATCTCGCT
GCTGGAGATCCTGTCCAGCCACTCCTCCGACGAGGTGTACCTCGGCCAGCGCGACACCAA
GGAGTGGACGTCGGACGCCAAGGCGCAGGAGGCGTTCAAGCGGTTCGGCGCGCGGCTGAC
CGAGATCGAGAAACGCGTGGAGGCCATGAACAAGGACCCGCGCTTCAAGAACCGCTACAG
CGCGGCCCAGTTCCCCTACACCCTGCTCTTCCCCAACACCTCCGACAAGGGCGATAACAC
CGGCGTCACCGCCAAGGGCATCCCCAACAGCATTTCCATCTGA