Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042507_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:170097428:170108009:-1 gene:Zm00001d042507 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 42
Sequence

ATGGGGAGCACGGGGCGCGAGCCGGAGGTGACCCGCGCCGACTTCCCCGACGGCTTCGTC
TTCGGCGTCGCTACCTCCGCGTACCAGATTGAAGGAGCGAGAAGGGAGGGAGGCAAAGGA
GACAGCATATGGGATGTATTTACAGATGACAAAGAACATGTCTTAGACAGAAGCAATGGA
GAAATTGCAGTTGATCACTACCATCGATACAAGGAAGACATTGAGCTCATGGCAAGTCTA
GGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGATGGCTTGGGG
GGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGACCTCATCAATTTTATGATTTCG
AAAGGTATTGAGCCTTACGCAACTCTATATCATTGGGATCTTCCAAACAATCTTCAGAAG
ACTCTGGGGGGCTGGATTTCTGACAAGATTGTGGAGTACTTTGCATTGTATGCAGAAGCT
TGCTTTGCAAATTTTGGAGACAGGGTAAAGCATTGGATAACGATCAATGAACCTCTCCAA
ACTGCAATCAATGGTTATGGGATTGGAATTTTTGCACCTGGAGGATGCCAAGGTGAAACT
GCTAGATGTTACTTGGCTGCCCATCACCAAATCTTGGCTCATGCTGCTGCTGTTGATGTT
TATAGAAGAAAATTCAAGGTTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAA
TGGGCAGAGCCATTTTCTGAAAATGTGGAAGACCAAATTGCTGCACAGCGGAGGCTTGAC
TTTCAACTTGGATGGTACCTAGATCCAATATATTTTGGTGATTACCCAGAAAGCATGCGT
CAGCGACTGGGCAGTGATCTTCCAACCTTTTCAGAGAAAGATAAAGAGTTCATGAGGAAC
AAAATTGATTTTGTTGGAGTAAATCATTATACTTCAAGACTCATTGCTCATCTCCAAAAT
CCAAATGATGTTTATTTCTACCAAGTGCAACAAATGGAGCGAATAGAAAAATGGAATAGT
GGTGAAAAAATTGGTGAAAGGGCTGCATCTGAATGGCTTTTCATAGTTCCTTGGGGCCTT
CATAAGTCACTTAATTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAG
AATGGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGACACG
ACGAGGGTCGGTTACTTCAAAGGGTACCTCAATTCAGTTGCGCAAGCGATCAAGGACGGA
GCTGATGTCCGCGGGTACTTTGCGTGGTCGTTCCTGGACAACTTCGAGTGGGCAATGGGC
TACACCAAGAGGTTCGGCATAGTCTACGTGGACTACAAGAACGGGCTGTCCAGGCACCCG
AAAGCATCGGCGCTGTGGTTCTCGCGCTTGCTCAGGGGCGAGGCTGGCACTGGCACAAGC
TGA

Peptide Sequence

PEP ID

Zm00001d042507_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:170097428:170108009:-1 gene:Zm00001d042507 transcript:Zm00001d042507_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 42
Sequence

MGSTGREPEVTRADFPDGFVFGVATSAYQIEGARREGGKGDSIWDVFTDDKEHVLDRSNG
EIAVDHYHRYKEDIELMASLGFSAYRFSISWARIFPDGLGGNVNDQGVAFYNDLINFMIS
KGIEPYATLYHWDLPNNLQKTLGGWISDKIVEYFALYAEACFANFGDRVKHWITINEPLQ
TAINGYGIGIFAPGGCQGETARCYLAAHHQILAHAAAVDVYRRKFKVAQGGEVGLVVDCE
WAEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRN
KIDFVGVNHYTSRLIAHLQNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGL
HKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDG
ADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRLLRGEAGTGTS

Transcript Sequence

Transcript ID

Zm00001d042507_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:170097428:170108009:-1 gene:Zm00001d042507 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 42
Sequence

TTCGTTTTTTCATCTCACGGTTCGGCTTTTGAGCAACACTGGAGCTGCTGTCAGAAAGGC
TACCTGCATGACAAACAAGTAGGGCCAATCCCTTCTGGAAGACTGGAACGGACGAACTGC
CACAGTAGACTGAACACTGGCACACAGCGCCCTCGGATCTGCCGCTCTCGTCTCGCTCGC
TCGCGTGCATTGGCCGACAAGGGACGCCACGCCGGCGTGGCTGCTCACGTGTTCTCAGTT
CTTACCCTGCGCTCTCGCCGCCCGGGGCAACTGGCGAGCGAGTGTGGCTGCCGCTTCCTC
TCCGAGTCAGGCGCCATTTAATAATTCAATTCTACCCCCAAGCCCACGCTTCCGAATTCA
CCGACTCCTCCTCCACGCCGCGTCGAGATCGCTCAGGCCTTCGCTTCCAGCAACTCCACC
ACTCAGCCCACCCGCCGGAGCAATGGGGAGCACGGGGCGCGAGCCGGAGGTGACCCGCGC
CGACTTCCCCGACGGCTTCGTCTTCGGCGTCGCTACCTCCGCGTACCAGATTGAAGGAGC
GAGAAGGGAGGGAGGCAAAGGAGACAGCATATGGGATGTATTTACAGATGACAAAGAACA
TGTCTTAGACAGAAGCAATGGAGAAATTGCAGTTGATCACTACCATCGATACAAGGAAGA
CATTGAGCTCATGGCAAGTCTAGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCG
TATATTTCCTGATGGCTTGGGGGGAAATGTCAATGATCAAGGAGTCGCCTTCTATAATGA
CCTCATCAATTTTATGATTTCGAAAGGTATTGAGCCTTACGCAACTCTATATCATTGGGA
TCTTCCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTGGAGTA
CTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAGGGTAAAGCATTGGAT
AACGATCAATGAACCTCTCCAAACTGCAATCAATGGTTATGGGATTGGAATTTTTGCACC
TGGAGGATGCCAAGGTGAAACTGCTAGATGTTACTTGGCTGCCCATCACCAAATCTTGGC
TCATGCTGCTGCTGTTGATGTTTATAGAAGAAAATTCAAGGTTGCACAAGGTGGTGAAGT
AGGGTTGGTTGTTGATTGTGAATGGGCAGAGCCATTTTCTGAAAATGTGGAAGACCAAAT
TGCTGCACAGCGGAGGCTTGACTTTCAACTTGGATGGTACCTAGATCCAATATATTTTGG
TGATTACCCAGAAAGCATGCGTCAGCGACTGGGCAGTGATCTTCCAACCTTTTCAGAGAA
AGATAAAGAGTTCATGAGGAACAAAATTGATTTTGTTGGAGTAAATCATTATACTTCAAG
ACTCATTGCTCATCTCCAAAATCCAAATGATGTTTATTTCTACCAAGTGCAACAAATGGA
GCGAATAGAAAAATGGAATAGTGGTGAAAAAATTGGTGAAAGGGCTGCATCTGAATGGCT
TTTCATAGTTCCTTGGGGCCTTCATAAGTCACTTAATTATATAGCGAAGAAGTACAATAA
TCCAGCAATTTATGTTACTGAGAATGGCATGGATGAAGAGGACGATCAATCCGCAACGCT
TGACCAGGTCCTAAACGACACGACGAGGGTCGGTTACTTCAAAGGGTACCTCAATTCAGT
TGCGCAAGCGATCAAGGACGGAGCTGATGTCCGCGGGTACTTTGCGTGGTCGTTCCTGGA
CAACTTCGAGTGGGCAATGGGCTACACCAAGAGGTTCGGCATAGTCTACGTGGACTACAA
GAACGGGCTGTCCAGGCACCCGAAAGCATCGGCGCTGTGGTTCTCGCGCTTGCTCAGGGG
CGAGGCTGGCACTGGCACAAGCTGAGCGAACTGCACGCAGGAAGCAAGCACAGAACGTCG
TTATTACAATATAAATATTCCACACAACTAGACGTTTTTCTCCTGTTGTTGTATCGTACT
ACTGTACAGTAAGCGCCAATAAGCTAGCCTCAGATGTGTGCTGCCTGCCTATACCTCTAG
TGACTGCCATTGATCCAGCACTAGCTGAAATGTACCCGGCCTCCAAGAATCAGCACCAGA
ATATATGCTTTGAATTGAACTCA