Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042505_T035
CDS Infomation

cds chromosome:B73_RefGen_v4:3:170028834:170033693:1 gene:Zm00001d042505 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sister chromatid cohesion 1 protein 4
Sequence

ATGGACATTGATGATAACAAAAGTCAAGACATAATAGCTGAAGGATACCACAACATGGAT
GGTGGGCATTCTAGTCATGGAAAGCTAGGTTCACTGAATCTGAATGCAATTGACCTAGGA
GGAAACAGTATCCCTAACTGGACTGGTTACAATGTACATACTCCTGATTTGAATGATATA
TTATTGCATAATGAGGGTATTGCAGGGCCATCAGCTTCGTACATTCAACCTAGCCCATAT
ACTTGTGATGAACCTGCATCACCAGAGTTCATTAGTGCTCAGGCCCCAGCTACACCTGGT
TTAATGGAAGAGACAGTTCCTTCTAGAGTCCATGAAAGTCCTGTTCTAAGTCCACAGAGA
AAACCATCACCGTCAACCAATGATGAAACTGCAAAGACTGACACTCCTGCTGCTCCAGCC
TCAGATTTTCTTCATTCGGCTACAGGAAATGCCAATGATGTTGGTGCTGAAAGGACAGAA
CTTGGATTGGCGAAGCATGTGCAAGTTGAGTCTTCTGCTTTCTGGGACGCTGATGCATCG
GGACAACAGCACACAAGTGAGGGTTTACCATCCCAGGGTCAAGCTGATCACTTAGAACCC
GCTGCTGATAAATTGGTCAATTCTGATGGTATAGCCGCATCTGTTGAAACTGTAACTGTC
AATGCAACCATTAAAGATGTACCTTTGGCTGTAAATGATTCAGAGCCATGTGTTGATGGT
TCTACTGAACCATCTGTGGTGGAGAACCTGGTACAGATTAATGGGCCATTAATTGATGCA
CAAGGTACAATTACACAAATTGCAGATTTTCAACATGAAGCCCAAGCAATGCAACAAGTA
GTGGCATCTAATGATAGACTGAATGAACTAGCAACTTCAGAATTTGCTGAGCCTGAGAAA
ATGCTGTCAGTTCCAGATTCTGAATTCAATCATCCAATTGACTTGGGGCTCATAACTGCG
GAAAAGGGAACAACTGAATCTGATGGAAGTAACATAATAGGCAGCCTTGCTAGCAGAAAA
AGACATCTGGAAGATAGCTTACCAGCTTTAGAGAGTGAGACCACTGAAAGGTTGTCTAGC
CGACCACATGGTATACGAACCAACGATTTTGTTCCCCATGATGATGATATACTGGCATCT
ATTTTAGTCGGTAGAAGGACCCCTGGATTCACACTTGATTCAACACCACTACCACCGAGG
GAATCGTCTCTGAAACGCCGGAGGTTGGGCTCGAAGATGGGCACACTCAAGAGGAAAGTG
CAAATAGACGATGCCATGGTCCTGCATGCTGATACTATACGGCAACAGTTGATCAACACT
GAGGATATACGGCGCATTCGTAAAAAAGCTCCATGCACTCGTTCCGAAATATGGATGATT
GAGAAAGGTTCACTGGAAGATGATATATTCCACGAGCCCATCTTTTCCTGCCTATCTGAG
GAGCTAAACAAATTACACAATCGGACATATGAGGCTATTGTACATCCTGCTGTACAGAAC
ATGGAACTGCAAGGTCAATTAGACATGCCTGAAGCAATTACAGAAGATAGCAATATTGCT
GGGTTTGGTGCTGCTACTATTGATGGCCCACTTCACATACCAGATGGGATTCAATCAGAT
GCCATGCTGCCACGTGCCAATGATGCATATGGCGCTACAGCTGCTTTTAGTTTGCAAGTT
CCTCCTAACAACCAGGTTAACGGTGCATCTAATGATTTTGTTATTGGCACTCTGTTTCAA
GGGGTGACTGGACCTTTTATTGGTAATGAGAAAGAAGTGGCACTTGCTGACAGAGAGCGT
GCTCAAGTAAATACACTGTATAGTGACCATTTTCAAGATGTCCCATCTGATTTGCATAGT
ACTGATGCAAACATTTCTAGTCAAGATGTGACTCTAGATAACTCTGGCCAAGCTTGCGCT
CACGCAACGGACGGCATGACAAGGGAGCTTACTCATTTTGTTCATAGTAATGCTAATATT
TTCGAGAGTAATGAGGTCCCTGCTTCTGAGATTACTGGGGTGGAATATAATCAAGGTGCC
TCTGGTTTCCCTCAATCAACGGAGGATGAAAATGCGGTGGGGTATAATCAAGATGTCTCT
GGTTTTCCTCGACCAACGGAGGATGAAAATGCGGTAGATTATAATCAAGATGCCTCTGGT
TTTCCTCGACCAACAGAAGATGTAAATGCGGTGGGATATAATCAAGATGCCTCTGGTTTT
GCTCGACCAACGGAAGATGTAAATGCGGTGGGATGTAATCAAGATGCCTCTGGTTTTCCT
CGATCAATGAAGGATGAAAATGCGGTGGAATATAATCAAGATGGCTCTGGTTTTCCTCGA
CCAGCTGAAAATGAAAATGATGTGTCTGCTATGGGAGATAATTCTGGCTTCCATGAAAAC
AACATGGGTTCTCTTACGGATCTGGATATGGTGAATGACTATGAACTGAAGGAAAGCAAT
GATTTTGGGAGTGCAATTAATGGTGTTGATACAGATTTTCTGAACTACGACGATGATGAC
GGCGGGGACTTCGACGACGCCAACGACGATGAGCCAAATCCCAACGAGTTTCAGTCTCTC
GACAACAGTGGTTGGTCTTCTCGCACCAGGGGCGTTGCAAGATACCTCAAGGCTTTATTC
GACGACGAGTCTGGTCTGGAGAGGAAGAGCGTTGCTATCGACCATCTGGTGCGCGGGAAG
ACGCGGAAGGAAGCGTCGAGAATGTTCTTCGAGACCTTGGTGCTGACGACGAAGGACTAC
ATCAGCGTGGACCAACCGAACCCCTTCGACTTGGTGAGAATAAAGCCAGGCTCAAAGCTG
CTGATGTCGGAATTCTAG

Peptide Sequence

PEP ID

Zm00001d042505_P035
PEP Infomation

pep chromosome:B73_RefGen_v4:3:170028834:170033693:1 gene:Zm00001d042505 transcript:Zm00001d042505_T035 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sister chromatid cohesion 1 protein 4
Sequence

MDIDDNKSQDIIAEGYHNMDGGHSSHGKLGSLNLNAIDLGGNSIPNWTGYNVHTPDLNDI
LLHNEGIAGPSASYIQPSPYTCDEPASPEFISAQAPATPGLMEETVPSRVHESPVLSPQR
KPSPSTNDETAKTDTPAAPASDFLHSATGNANDVGAERTELGLAKHVQVESSAFWDADAS
GQQHTSEGLPSQGQADHLEPAADKLVNSDGIAASVETVTVNATIKDVPLAVNDSEPCVDG
STEPSVVENLVQINGPLIDAQGTITQIADFQHEAQAMQQVVASNDRLNELATSEFAEPEK
MLSVPDSEFNHPIDLGLITAEKGTTESDGSNIIGSLASRKRHLEDSLPALESETTERLSS
RPHGIRTNDFVPHDDDILASILVGRRTPGFTLDSTPLPPRESSLKRRRLGSKMGTLKRKV
QIDDAMVLHADTIRQQLINTEDIRRIRKKAPCTRSEIWMIEKGSLEDDIFHEPIFSCLSE
ELNKLHNRTYEAIVHPAVQNMELQGQLDMPEAITEDSNIAGFGAATIDGPLHIPDGIQSD
AMLPRANDAYGATAAFSLQVPPNNQVNGASNDFVIGTLFQGVTGPFIGNEKEVALADRER
AQVNTLYSDHFQDVPSDLHSTDANISSQDVTLDNSGQACAHATDGMTRELTHFVHSNANI
FESNEVPASEITGVEYNQGASGFPQSTEDENAVGYNQDVSGFPRPTEDENAVDYNQDASG
FPRPTEDVNAVGYNQDASGFARPTEDVNAVGCNQDASGFPRSMKDENAVEYNQDGSGFPR
PAENENDVSAMGDNSGFHENNMGSLTDLDMVNDYELKESNDFGSAINGVDTDFLNYDDDD
GGDFDDANDDEPNPNEFQSLDNSGWSSRTRGVARYLKALFDDESGLERKSVAIDHLVRGK
TRKEASRMFFETLVLTTKDYISVDQPNPFDLVRIKPGSKLLMSEF

Transcript Sequence

Transcript ID

Zm00001d042505_T035
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:170028834:170033693:1 gene:Zm00001d042505 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sister chromatid cohesion 1 protein 4
Sequence

CTATCTTATTATCTCTTGTACATTTCATTTAACTTGTTTTTTGTCTGACTGTAACAATCT
GTATCTTTTTTTTACATGCAAAGTTTTGTATTGTTCCCCAGGAATGGTGATTAGTTCATT
TATGCTGCAAAACTAGGATTGTGTAGTTCAATGATATTGTCATAATACCAATTATCTGTG
TGTAGTAACTCAACATTTCAAATTAGGCGATGCTGCATTGTTGCCCTTTTAATCATGTCT
CGCAAGTTACACTGGTTCTATCTTTCTTCTTTGTGCTTTCAGCATTATTATTCAAGGTCG
GTCATCAGTCCCTTCTACTGATATGGACATTGATGATAACAAAAGTCAAGACATAATAGC
TGAAGGATACCACAACATGGATGGTGGGCATTCTAGTCATGGAAAGCTAGGTTCACTGAA
TCTGAATGCAATTGACCTAGGAGGAAACAGTATCCCTAACTGGACTGGTTACAATGTACA
TACTCCTGATTTGAATGATATATTATTGCATAATGAGGGTATTGCAGGGCCATCAGCTTC
GTACATTCAACCTAGCCCATATACTTGTGATGAACCTGCATCACCAGAGTTCATTAGTGC
TCAGGCCCCAGCTACACCTGGTTTAATGGAAGAGACAGTTCCTTCTAGAGTCCATGAAAG
TCCTGTTCTAAGTCCACAGAGAAAACCATCACCGTCAACCAATGATGAAACTGCAAAGAC
TGACACTCCTGCTGCTCCAGCCTCAGATTTTCTTCATTCGGCTACAGGAAATGCCAATGA
TGTTGGTGCTGAAAGGACAGAACTTGGATTGGCGAAGCATGTGCAAGTTGAGTCTTCTGC
TTTCTGGGACGCTGATGCATCGGGACAACAGCACACAAGTGAGGGTTTACCATCCCAGGG
TCAAGCTGATCACTTAGAACCCGCTGCTGATAAATTGGTCAATTCTGATGGTATAGCCGC
ATCTGTTGAAACTGTAACTGTCAATGCAACCATTAAAGATGTACCTTTGGCTGTAAATGA
TTCAGAGCCATGTGTTGATGGTTCTACTGAACCATCTGTGGTGGAGAACCTGGTACAGAT
TAATGGGCCATTAATTGATGCACAAGGTACAATTACACAAATTGCAGATTTTCAACATGA
AGCCCAAGCAATGCAACAAGTAGTGGCATCTAATGATAGACTGAATGAACTAGCAACTTC
AGAATTTGCTGAGCCTGAGAAAATGCTGTCAGTTCCAGATTCTGAATTCAATCATCCAAT
TGACTTGGGGCTCATAACTGCGGAAAAGGGAACAACTGAATCTGATGGAAGTAACATAAT
AGGCAGCCTTGCTAGCAGAAAAAGACATCTGGAAGATAGCTTACCAGCTTTAGAGAGTGA
GACCACTGAAAGGTTGTCTAGCCGACCACATGGTATACGAACCAACGATTTTGTTCCCCA
TGATGATGATATACTGGCATCTATTTTAGTCGGTAGAAGGACCCCTGGATTCACACTTGA
TTCAACACCACTACCACCGAGGGAATCGTCTCTGAAACGCCGGAGGTTGGGCTCGAAGAT
GGGCACACTCAAGAGGAAAGTGCAAATAGACGATGCCATGGTCCTGCATGCTGATACTAT
ACGGCAACAGTTGATCAACACTGAGGATATACGGCGCATTCGTAAAAAAGCTCCATGCAC
TCGTTCCGAAATATGGATGATTGAGAAAGGTTCACTGGAAGATGATATATTCCACGAGCC
CATCTTTTCCTGCCTATCTGAGGAGCTAAACAAATTACACAATCGGACATATGAGGCTAT
TGTACATCCTGCTGTACAGAACATGGAACTGCAAGGTCAATTAGACATGCCTGAAGCAAT
TACAGAAGATAGCAATATTGCTGGGTTTGGTGCTGCTACTATTGATGGCCCACTTCACAT
ACCAGATGGGATTCAATCAGATGCCATGCTGCCACGTGCCAATGATGCATATGGCGCTAC
AGCTGCTTTTAGTTTGCAAGTTCCTCCTAACAACCAGGTTAACGGTGCATCTAATGATTT
TGTTATTGGCACTCTGTTTCAAGGGGTGACTGGACCTTTTATTGGTAATGAGAAAGAAGT
GGCACTTGCTGACAGAGAGCGTGCTCAAGTAAATACACTGTATAGTGACCATTTTCAAGA
TGTCCCATCTGATTTGCATAGTACTGATGCAAACATTTCTAGTCAAGATGTGACTCTAGA
TAACTCTGGCCAAGCTTGCGCTCACGCAACGGACGGCATGACAAGGGAGCTTACTCATTT
TGTTCATAGTAATGCTAATATTTTCGAGAGTAATGAGGTCCCTGCTTCTGAGATTACTGG
GGTGGAATATAATCAAGGTGCCTCTGGTTTCCCTCAATCAACGGAGGATGAAAATGCGGT
GGGGTATAATCAAGATGTCTCTGGTTTTCCTCGACCAACGGAGGATGAAAATGCGGTAGA
TTATAATCAAGATGCCTCTGGTTTTCCTCGACCAACAGAAGATGTAAATGCGGTGGGATA
TAATCAAGATGCCTCTGGTTTTGCTCGACCAACGGAAGATGTAAATGCGGTGGGATGTAA
TCAAGATGCCTCTGGTTTTCCTCGATCAATGAAGGATGAAAATGCGGTGGAATATAATCA
AGATGGCTCTGGTTTTCCTCGACCAGCTGAAAATGAAAATGATGTGTCTGCTATGGGAGA
TAATTCTGGCTTCCATGAAAACAACATGGGTTCTCTTACGGATCTGGATATGGTGAATGA
CTATGAACTGAAGGAAAGCAATGATTTTGGGAGTGCAATTAATGGTGTTGATACAGATTT
TCTGAACTACGACGATGATGACGGCGGGGACTTCGACGACGCCAACGACGATGAGCCAAA
TCCCAACGAGTTTCAGTCTCTCGACAACAGTGGTTGGTCTTCTCGCACCAGGGGCGTTGC
AAGATACCTCAAGGCTTTATTCGACGACGAGTCTGGTCTGGAGAGGAAGAGCGTTGCTAT
CGACCATCTGGTGCGCGGGAAGACGCGGAAGGAAGCGTCGAGAATGTTCTTCGAGACCTT
GGTGCTGACGACGAAGGACTACATCAGCGTGGACCAACCGAACCCCTTCGACTTGGTGAG
AATAAAGCCAGGCTCAAAGCTGCTGATGTCGGAATTCTAGACCGTCCAAGCCAGCTTTTA
CCCCTGGCGCCATACATACGTGTTACCAATTGTATCCATCACACCGACCTACCGCACCCC
CTCCTTTACCCCCTCCAAATCCATTTTTGTTTTTGTTGTTGTTAAGTTATCCTCCTCTGT
GTAGCATCTCCCGCGC