Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042494_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:3:169452081:169458291:1 gene:Zm00001d042494 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat (PPR) superfamily protein
Sequence

ATGGCGTCAGGAGCCACCTTAAGCTGGGTTAAAACCCCATTTGACACCCGAAGATTTCAT
GACCTATCTAATCTAAGTTTCCGCTGCCGAAACCCTTTTGGATCAATTCAGCCCTGGTGG
CTGCAAACTGATCAAGACTCATCCCTAATCAAGGTTCGCGTGGCTGCTGATTATTCAGAC
TCAATGCCAGATTCAAAGTACACGAGAGATCGGGGTTATCACCCTCTTGAAGAAGTTAAA
GAACGTCCAAAGAAGAAGGACCTGTTGCTGACAGATATTGAAACAGCTAGAACAGTAGTA
GAGGCAAATAGCAAGGGGTTGCTTGTATTTCCTGCTAGGGTACACAATGAACCTCATGGA
CATGTTTCTTGGTCGGAGTTTCAATATGTTGTTGATGAATATGGAGACATTTTCTTTGAA
GTACCTGACAGTGAGAACATCCTGGAAGATGATACTGCAAACAATCCTGTGACAGTTTTG
ATTGGAATGGATGGACCCATTATTGGAGAAAGTAGTGTGGCGATTAGTGATTTCAGTGAT
TACATGGATGGTGAAAATTTTATGGACGTTCCTGATGAGCACCACACCAAGATTGATACA
GAAATAACTGATATTCTCATAGAGTGGGGGATGCCTGCAACAATGCGTGCAATACATCCG
ATTTACTTTGCCAAATGTTTGACAAAGGTAAGCGATAAATAA

Peptide Sequence

PEP ID

Zm00001d042494_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:3:169452081:169458291:1 gene:Zm00001d042494 transcript:Zm00001d042494_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat (PPR) superfamily protein
Sequence

MASGATLSWVKTPFDTRRFHDLSNLSFRCRNPFGSIQPWWLQTDQDSSLIKVRVAADYSD
SMPDSKYTRDRGYHPLEEVKERPKKKDLLLTDIETARTVVEANSKGLLVFPARVHNEPHG
HVSWSEFQYVVDEYGDIFFEVPDSENILEDDTANNPVTVLIGMDGPIIGESSVAISDFSD
YMDGENFMDVPDEHHTKIDTEITDILIEWGMPATMRAIHPIYFAKCLTKVSDK

Transcript Sequence

Transcript ID

Zm00001d042494_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:169452081:169458291:1 gene:Zm00001d042494 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat (PPR) superfamily protein
Sequence

CCTGCGCTGTGCGTGTAGGATGCGCAAATTACCAAAAGGGCCCTGGGCTACTGAGTTGGC
GGCTGCTCTCTCGGTGGTCCCAAAGGGAAGAGGGGGAACCGGGCAGAGAGCAGCGCAGGA
CAAGACAGGCAGAGAAGTCGCTAGCCAGACTAGTCTGCGCGGTGATCCGTCTTCCCTGGG
GTGTTCCGCCGTCCTGCAGCAGAGGCAGGGGGTTGCCGCTCTCGCCGCCGCACGCTGCGG
CTCTGCTCTGCTCCGCCTGATCCTTCCTGCGGCCCTTGTTTTTTCCTCTCGTTTCAGGTG
GCCAGCCTTGGTTTTGCAGAACTCATTCAGTGGCCTCTGCTGAAAAGTGTTCAATGGCGT
CAGGAGCCACCTTAAGCTGGGTTAAAACCCCATTTGACACCCGAAGATTTCATGACCTAT
CTAATCTAAGTTTCCGCTGCCGAAACCCTTTTGGATCAATTCAGCCCTGGTGGCTGCAAA
CTGATCAAGACTCATCCCTAATCAAGGTTCGCGTGGCTGCTGATTATTCAGACTCAATGC
CAGATTCAAAGTACACGAGAGATCGGGGTTATCACCCTCTTGAAGAAGTTAAAGAACGTC
CAAAGAAGAAGGACCTGTTGCTGACAGATATTGAAACAGCTAGAACAGTAGTAGAGGCAA
ATAGCAAGGGGTTGCTTGTATTTCCTGCTAGGGTACACAATGAACCTCATGGACATGTTT
CTTGGTCGGAGTTTCAATATGTTGTTGATGAATATGGAGACATTTTCTTTGAAGTACCTG
ACAGTGAGAACATCCTGGAAGATGATACTGCAAACAATCCTGTGACAGTTTTGATTGGAA
TGGATGGACCCATTATTGGAGAAAGTAGTGTGGCGATTAGTGATTTCAGTGATTACATGG
ATGGTGAAAATTTTATGGACGTTCCTGATGAGCACCACACCAAGATTGATACAGAAATAA
CTGATATTCTCATAGAGTGGGGGATGCCTGCAACAATGCGTGCAATACATCCGATTTACT
TTGCCAAATGTTTGACAAAGGTAAGCGATAAATAATTATTTGAAGAGTGCAGACACCACA
AACCAGCAGCACTTGGAATAGTGAAAATGGTCAAGCTGATAAAGATGCTATTAACGAAAG
GACAGACCCAGTGGGCAGTGGCCCGTTCTGGTGGCTCCCACATGAGTAGGGTCTAGACAA
GGAATAATCAAGGCAAGCTTTACTCCTGCATTTTGCAGAGAGGCTGCATTGAACTAGGAC
CTTTGGCTCAGTGAGAAGGCTTCGCACCACTGCACCAGGCTTGCCCTTCAATAAAGATGC
TATTAATGATTCATTGAATTCAGCTTACATCATGCACGATTTGAATGTGAACCTTCAAAT
CATGCACTTTAGATTGCAGTCTCCAGACCACTCCGGTTGCCCATATCAAGTTCTGAAAAA
AAAGGCAAAGATAGAAAATCAAGATGGTCTCATGTTAGCTTCAGAATATGGTATCTTTCA
GGAGGGATAGCAAATATCAGTAAAACAAAAGAAAGATTGGCAACAGTTTGATGTCTTTCT
CGGAGTATCCCTTTTCCCATCAATTAGTATTTGATAAAAACTCTGCTAAAACTAGAATAT
ATTTAGCTTTTGTATATATGCCAATCCGAACTTTTTAATTTGTTCTGAACTTTCATGTGC
CAGTCTGTTGTAGAGTAAAAACTTTACCAAAGCATTTCTCCGAGCATAAGTGGTCACAAG
AGCATAGCTCTAAATGTGTCCCTCATCAAATCTCTCAAGTTGCAGAGAACTAGGCAATCA
CGTTACCTGCTCTTTTACTGCACAGGCCATTCATAATAATAATGGGGAGAAGATGGATAG
TCCATCAAACGGTCTCTCTATTGTAGGATATCTGAGACCTGCTTTCATAGAGGAAGAGTC
TTACTTGAGGAGCATGTTTCATGGTGACAATGGTGGTTATTCATCTGACTGGAAAGTAAA
TGAAACCGATGAATACAACAGAGAAACTCGGCCAGTTTCTGGAACCAATCGCCTCATTGG
TAATTTAGTTGGTTGAAATCTTGCACGTCAGCTATCCACTTTACTCCAATTTTTATTTTA
CTAGTACTAAGCAAATATTCAGATGATGATAAATCAAGATTTGACTTCAATCATGCTGAA
ACTAGAACTGATTCAATGATCTACAAGCTGGAGATAATGACAATTGAACTGTTTTCCATG
TATGGAAAGCAGTTTAAGATTGATCCACAAGATTTTCAAGATTCAGAACCAGATATTCTT
GCAAATTCTGCTTCATCGATAATAGAACGGATCAAAGAAAACAGTGATCAGTGTGCCGCG
GCTCTCAGGTCGCTCTGTCGCCGGAAAAAGGGCCTCACTGTCGAGGAGGCAAGCTTGATT
GGTGTTGACAGCCTTGGTATTGATGTAAGAGCCTTTTCTGGCTTGGAAGTTAAGACTGTT
CGATTTTCATTCAATGCACAGGCGCTCTCTGAACGTTCAGCTGAAAAGAAGATCAGGCGA
ATGCTTTTCCCCCGTTACCAGCGTAAAAACGTGAAAGCCTCTACTGAAGATGAGTCTTAA
CCTATCAGCTGTTTTTCCTGAGAAAGCATGCAAACACCTGGTTCAAAGACAAGGTGTCAA
GGGAATCAACACAATATCATCTTATGCGAGTTTGCTAGGAGATAGCGCACAACCTGTCGA
CTATGAGAATGACCAAAAACATCAGAGTAATAAGGTTTGCCATGCATGGTCTCTAACATG
CTTCCAAGAATATAGTTTGGTTTCTGACAGATAATAAAAAAAAAACGAATAAGGTGCCAG
TTCATGTATAAAAGATGAACTGCGACTTTATGCTGGCGGAAACTGATTAGCTGACCAAGC
TTTGTCAGCTACAAATTCCCAGTAATAATAACGAGCTGCGAGGTGAAAGGGCAGAGTAAT
AAGGTCTCGTTGGCCTAAATCAGTTCTTAGTTTCTTACCCACAACCTGTAACTAACTTTG
TTGTCTCTTTTCATGTAGACATAAATGTCATGCAACGCAACTGCGATTATGGCATTGTTT
TGTTGAACTATACATAAAAGAAAACTTGATAAAGTTTCGAGTGCTTTTAGCTGTCAGATT
CTACTGTGCTCGATTGCACTACTGTACTCGTGTACTGTAAGAAAAGACTGACCAGTTATT
TTCCAGGAAAATTAAAGAACAATGAAATTTTAAAATTT