Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042475_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:3:168871287:168878640:-1 gene:Zm00001d042475 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable thimet oligopeptidase
Sequence

ATGTGTCTTGCTATTGTATTATTTGCAATTTGTATTAAGATGATTTTGCAAATTGATTTG
ACTATCGTTTTGCTGAATTGTCTAATTATGGTTGAACAGGTGAAAGAGTTTGAGCGCAAT
GGAGTAAAACTATCTCAAAGCAAGAGAAAAGAAATGGAGAAATTGAAATCTCATATAGAT
GCATTAAACTTGAAGTATCTCCAAAATTTGAATGATTTCACCAAATTCCTTCTTTTAGGT
GAAGATGAACTAGCTGGAATGCCCTTTGAGTTCCTTAAGGATCTGGAAAAGGCTGATGGG
AAGTTTAAGGTTCCGTTGACTAGTTACCATGTTACTCCAGTTCTTGAGCACTGCAAGGTT
GGCTCTACCAGGAAGCAGATTGCTGTTGCTTATGGACAAAAAGGTGGGAAGGATAATGTA
GCCATCCTAGAAAATTTGGTCCAGCTAAGACACAAGTTTGCTAAATTGCTGGGGTACACC
AACTATGCTGATTTTGCTATTGAGCCCAGAATGCCAAAGACTTCGAGGAAGATCTTAGAG
TTTTTGGAAGAGATGTCTGAACAATTAAGTGATGTGGCTAATAGAGAGCTCAACATACTC
AAAGACCTCAAGATCAAGGAGGAAGGAAATGCTCAGTTTGGAATGGAAGATTTGTTGTAC
TACATCAAAAGAGCTGAAGAATTCAAGGTTGATCTTGACGTTGGTGAAATTAAACAATAC
TTCCCTGTTGGCCTGGTCATATCTGGAATGCTGAAGATATTTCAGGATCTATTTGCACTA
CGATTCGACGAAATTAAGGATGTTGATGTTTGGCATGATACAGTTCGTGTGTTTTCTGTT
TGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTTGATATCTTTTCCAGGGAA
GGAAAGTATGCCCACACTTGTGTTGTGACCCTTCAGAATGGATGCTTATGTTCTAATGGT
ACACGTAAGGTTCCGGCTGCTGTGATATTATCTCAGTGTCCAAAAGAGTTTGATGGTAAT
TCAGCATTGCTGCGGTTCCCTGAAGTTGTGAGGCTATTCCATGAATTTAGCCATGTGGTC
CATCACGTATCCAACAGAGCCACCTTTTCAAGATTTTCAGGCCTTCGACTGGAGGGTGAC
TTTGCTGAAATTCCAAGCCTGCTACTCGAGAATTGGTGCTATGAGAGTATTTCTCTGAAA
ATGATGTCCGGCTTCCATCAGGGACATTACGAAATCCATAAGTAG

Peptide Sequence

PEP ID

Zm00001d042475_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:3:168871287:168878640:-1 gene:Zm00001d042475 transcript:Zm00001d042475_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable thimet oligopeptidase
Sequence

MCLAIVLFAICIKMILQIDLTIVLLNCLIMVEQVKEFERNGVKLSQSKRKEMEKLKSHID
ALNLKYLQNLNDFTKFLLLGEDELAGMPFEFLKDLEKADGKFKVPLTSYHVTPVLEHCKV
GSTRKQIAVAYGQKGGKDNVAILENLVQLRHKFAKLLGYTNYADFAIEPRMPKTSRKILE
FLEEMSEQLSDVANRELNILKDLKIKEEGNAQFGMEDLLYYIKRAEEFKVDLDVGEIKQY
FPVGLVISGMLKIFQDLFALRFDEIKDVDVWHDTVRVFSVWDASSSDLLGYFFLDIFSRE
GKYAHTCVVTLQNGCLCSNGTRKVPAAVILSQCPKEFDGNSALLRFPEVVRLFHEFSHVV
HHVSNRATFSRFSGLRLEGDFAEIPSLLLENWCYESISLKMMSGFHQGHYEIHK

Transcript Sequence

Transcript ID

Zm00001d042475_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:168871287:168878640:-1 gene:Zm00001d042475 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable thimet oligopeptidase
Sequence

TCCAGAACCTTCTAGAACCCATCGGGGCTCCGGGATGGAGCCCAGAAGACGAGAGCGCAG
GGTCATCGCCATCGCCGGTGCGGCAGCGCTCGTTGCCGTGGGCCTCAATATCGCCTTCTC
CGCCGTCGTCGCCCACCGTCGGAGGAAGCGACGAGAGCTTCCAGGGTTTACTGCTCAAGT
CAACCTATCAGCAGCTGCGATTAAAAGAACGACCGACCGTATCATCTCTAAGTCAAGGGA
AACTTATGATTCAGTGGCTGCAGTGCCCCTAGATAAAAATTAGATGCGCTGCAATTCCCT
CTGGTTCAAGCTTGTGTTCTTCCTAGGATGGTATCACCATCTGAGGATGTTCGCAAGGCA
AGTGCTGAAGCAGAGAAGCTATTGGATTCCCACTTTGTGCTTTGCAGGCAGCGTGAAGAT
GTTTATCGTGTCATAAAAGCATTTACAGTGAAAGGCGAGAGAATAGGTCCTGAAGCAACA
AGATTTCTTCAGTTTTTGGTGCAGAATTCTTTCGCTACATATAAATTTGATCGTAATGTT
CTGATTCTGACCGACAACTGAATGTTTATACATGTGATGATTTATTGTCAATGCTTTAAC
CCTGAATATCATTTTTCCATAACTGTTGTATACTTGTATTCTTATCTATTTCAATATGAA
CATACCTAATGGCTAATGTAGGTATAATCTGGCTCCTGAGTGGTCTCGTAAGGTTCTCAT
ACTGCATGTTCTTTTACGGTGATGTGTCTTTGCATCCTCAGTACCATCGCCTCATTCATC
TTGAACTTGAATTTCTGAATTATTTGTTAGCATAAAATATTAATATGATCTTTTTAAATT
CATTAAGGTGCATCAAAGCTCAAAAAAACCATAGAATTAATTGACTGTAAACATACTGAA
AGATATGTGATGTGTCTTGCTATTGTATTATTTGCAATTTGTATTAAGATGATTTTGCAA
ATTGATTTGACTATCGTTTTGCTGAATTGTCTAATTATGGTTGAACAGGTGAAAGAGTTT
GAGCGCAATGGAGTAAAACTATCTCAAAGCAAGAGAAAAGAAATGGAGAAATTGAAATCT
CATATAGATGCATTAAACTTGAAGTATCTCCAAAATTTGAATGATTTCACCAAATTCCTT
CTTTTAGGTGAAGATGAACTAGCTGGAATGCCCTTTGAGTTCCTTAAGGATCTGGAAAAG
GCTGATGGGAAGTTTAAGGTTCCGTTGACTAGTTACCATGTTACTCCAGTTCTTGAGCAC
TGCAAGGTTGGCTCTACCAGGAAGCAGATTGCTGTTGCTTATGGACAAAAAGGTGGGAAG
GATAATGTAGCCATCCTAGAAAATTTGGTCCAGCTAAGACACAAGTTTGCTAAATTGCTG
GGGTACACCAACTATGCTGATTTTGCTATTGAGCCCAGAATGCCAAAGACTTCGAGGAAG
ATCTTAGAGTTTTTGGAAGAGATGTCTGAACAATTAAGTGATGTGGCTAATAGAGAGCTC
AACATACTCAAAGACCTCAAGATCAAGGAGGAAGGAAATGCTCAGTTTGGAATGGAAGAT
TTGTTGTACTACATCAAAAGAGCTGAAGAATTCAAGGTTGATCTTGACGTTGGTGAAATT
AAACAATACTTCCCTGTTGGCCTGGTCATATCTGGAATGCTGAAGATATTTCAGGATCTA
TTTGCACTACGATTCGACGAAATTAAGGATGTTGATGTTTGGCATGATACAGTTCGTGTG
TTTTCTGTTTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTTGATATCTTT
TCCAGGGAAGGAAAGTATGCCCACACTTGTGTTGTGACCCTTCAGAATGGATGCTTATGT
TCTAATGGTACACGTAAGGTTCCGGCTGCTGTGATATTATCTCAGTGTCCAAAAGAGTTT
GATGGTAATTCAGCATTGCTGCGGTTCCCTGAAGTTGTGAGGCTATTCCATGAATTTAGC
CATGTGGTCCATCACGTATCCAACAGAGCCACCTTTTCAAGATTTTCAGGCCTTCGACTG
GAGGGTGACTTTGCTGAAATTCCAAGCCTGCTACTCGAGAATTGGTGCTATGAGAGTATT
TCTCTGAAAATGATGTCCGGCTTCCATCAGGGACATTACGAAATCCATAAGTAGTGAAGC
TTGCCAATCTCTGAAAAGAAGGCGTGATTTGTTTGCTGGCCTGAAAATGAAACAAGAGAT
ACTTTTGTGCCTTGTTGATCAGATAATACATTCAAGTGAGAATGTGGACATTGATGACTT
AATCAAGGATCTTCACCCCAAGGTAATGTTGGGTATACCTTTATTGGAAGGGACCAGTCC
AGCTTCAAGTTTTCCTCGTATTGCCTTTGGCTATGATGCTGTGTGCTACAGTTACATATG
GAGTGAGGTGTTTGCTGCTGATCTTTTTGTATCAAAATTTAAAGATGACTTGCTCAATCA
GCATGCTGGATTGCGGTTCAGAAATAAGGTGTTGGCTCCAGGAGGCTCAAAAGATCCCCT
GGAGATAATAACGGACTACCTAGGAAGAGAACCATCACTCCAACCTTTTATTCAGAGCAG
AACAAGGAACAGTCTGTGAGGGATCATTTATGATGTAACCGTTGAGTTTTTTCTTTCTTT
TTTCCTTTTTGAATTTAGCTATAGAAGGCCTGCTGACTGTCTCGAGTTATTTTTTTCGTA
ACGGACTGACAAGTCTGATCTTTGTGCCATTCTGTTTTCCGACGTCATTTGTTTGACCAT
TTAGTTAAG