Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042416_T021
CDS Infomation

cds chromosome:B73_RefGen_v4:3:166412353:166416256:-1 gene:Zm00001d042416 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEAD box RNA helicase1 description: DEAD box RNA helicase1
Sequence

ATGAACCCGTATGATCTCCGCTTCGCTGACCCCTCATCCTACCACGACAGGCGCAGCGAC
TTGACCGTGGCTCCTACGTTCGCTCCGCCGGCTCCCGTGGCTGCGGCGAACCTGAACCCT
TACGCCGCCGCCTACCCGCTGCCTGTGCCCGTTCCCGTGCCCGCGGCCCCCGCGGGCGGC
GACTACCAGCGCTACGGGCAGGGAGGCAGAGGCCGTGGTGGCGGTGGCAGAGGCGGTGGA
GGAGGGTACGGAGGTGGCGGCAGAGGAGGAGGTCGCGGGAGGGACGGGCTTGACTCGCTC
GCCCTCCCTAAGCCGGACTTTCGGAGCCTGATACCGTTCGAGAAAAACTTCTACGTGGAG
TGTCCCTCCGTCCAGGCAATGTCGGAGGCGGATGTGGCGCAGTACCGCCGCCTCCGGGAT
ATCACCATCGAGGGCCGGGATGTGCCCAAGCCGGTTAGATACTTCCAGGAAGCCAACTTC
CCAGATTACTGCATGCAAGCTATTGCCAAATCTGGATTTGTGGAGCCAACACCTATTCAA
TCTCAAGGTTGGCCTATGGCTTTGAAGGGTAGGGACCTGATTGGTATCGCTCAAACAGGC
TCAGGGAAAACATTATCTTATCTGTTACCTGGGTTGGTTCATGTTGGTGCCCAGCCTCGG
CTAGAACAAGGCGATGGCCCAATTGTATTAATTCTCGCTCCCACGAGAGAACTGGCTGTT
CAAATACAGGAAGAATCTACAAAATTTGGATCATATTCAAGAACTAGAAGCACATGTGTC
TATGGTGGTGCACCTAAGGGTCCACAAATACGGGACCTTAGAAGAGGAGTTGAAATTGTC
ATTGCAACTCCTGGCCGGTTGATTGATATGCTGGAAGCTGGTCACACAAACCTACGTAGA
GTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAA
ATTCGGAAAATAGTAGCACAGACAGGCAAACCTTGTACTGGAGTGCCACATGGCCTAGAG
AAGTTGAAGCCTTAG

Peptide Sequence

PEP ID

Zm00001d042416_P021
PEP Infomation

pep chromosome:B73_RefGen_v4:3:166412353:166416256:-1 gene:Zm00001d042416 transcript:Zm00001d042416_T021 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEAD box RNA helicase1 description: DEAD box RNA helicase1
Sequence

MNPYDLRFADPSSYHDRRSDLTVAPTFAPPAPVAAANLNPYAAAYPLPVPVPVPAAPAGG
DYQRYGQGGRGRGGGGRGGGGGYGGGGRGGGRGRDGLDSLALPKPDFRSLIPFEKNFYVE
CPSVQAMSEADVAQYRRLRDITIEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQ
SQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAV
QIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAGHTNLRR
VTYLVLDEADRMLDMGFEPQIRKIVAQTGKPCTGVPHGLEKLKP

Transcript Sequence

Transcript ID

Zm00001d042416_T021
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:166412353:166416256:-1 gene:Zm00001d042416 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEAD box RNA helicase1 description: DEAD box RNA helicase1
Sequence

GCCGCCCGCAGATCCATCCCCTCCCGGCCTCCCTAGCCTTTCCCCTCGAGCACGTCAGCG
CCCTCGCCCTGCTCTGTCGGCCGGCCAAGCTCCTCACCGGCGCCATGAACCCGTATGATC
TCCGCTTCGCTGACCCCTCATCCTACCACGACAGGCGCAGCGACTTGACCGTGGCTCCTA
CGTTCGCTCCGCCGGCTCCCGTGGCTGCGGCGAACCTGAACCCTTACGCCGCCGCCTACC
CGCTGCCTGTGCCCGTTCCCGTGCCCGCGGCCCCCGCGGGCGGCGACTACCAGCGCTACG
GGCAGGGAGGCAGAGGCCGTGGTGGCGGTGGCAGAGGCGGTGGAGGAGGGTACGGAGGTG
GCGGCAGAGGAGGAGGTCGCGGGAGGGACGGGCTTGACTCGCTCGCCCTCCCTAAGCCGG
ACTTTCGGAGCCTGATACCGTTCGAGAAAAACTTCTACGTGGAGTGTCCCTCCGTCCAGG
CAATGTCGGAGGCGGATGTGGCGCAGTACCGCCGCCTCCGGGATATCACCATCGAGGGCC
GGGATGTGCCCAAGCCGGTTAGATACTTCCAGGAAGCCAACTTCCCAGATTACTGCATGC
AAGCTATTGCCAAATCTGGATTTGTGGAGCCAACACCTATTCAATCTCAAGGTTGGCCTA
TGGCTTTGAAGGGTAGGGACCTGATTGGTATCGCTCAAACAGGCTCAGGGAAAACATTAT
CTTATCTGTTACCTGGGTTGGTTCATGTTGGTGCCCAGCCTCGGCTAGAACAAGGCGATG
GCCCAATTGTATTAATTCTCGCTCCCACGAGAGAACTGGCTGTTCAAATACAGGAAGAAT
CTACAAAATTTGGATCATATTCAAGAACTAGAAGCACATGTGTCTATGGTGGTGCACCTA
AGGGTCCACAAATACGGGACCTTAGAAGAGGAGTTGAAATTGTCATTGCAACTCCTGGCC
GGTTGATTGATATGCTGGAAGCTGGTCACACAAACCTACGTAGAGTGACATACCTTGTGT
TGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGGAAAATAGTAG
CACAGACAGGCAAACCTTGTACTGGAGTGCCACATGGCCTAGAGAAGTTGAAGCCTTAGC
AAGACAGTTTCTACAAAATCCTTACAAGGTAATCATAGGCTCACCTGAACTTAAAGCTAA
TCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGACTCAG
TAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATTCTTCCAAACAAAAAA
GGATTGCGATAAGATCACCCGGCAGCTTAGAATGGATGGGTGGCCAGCATTATCTATACA
TGGTGATAAAGCTCAAGCTGAACGGGACTATGTTCTTGCAGAGTTTAAGAGCGGCAAGAG
CCCCATAATGGCTGCCACAGATGTGGCAGCACGTGGTCTTGGTATGATGATTTATTTGAA
TATTAGGATTAGGTAGTAGTTCCAAGTGCTCAAGGGTGATAAGTCGGAGGGTTGTTGAGC
TGCGATTGGTTGAGTGAACTGAACTTGTGGATTGGTGGTGTATACCAAGGTGCCATCATG
TCAAAGGTAGATAATTTCCCCCCGTGGTTTACCTCATTTGAGCGTGAGCATTGGCAGTGT
TACACAGGCAGTTCAACTTTGAGCTATCATGGTAATGTTCCCTTTCCGAATAAGCCTTTT
AGGGAGCCTACATTTGGATAAAATGGAAATCCTCAAAAAGTAGCATGCAACCGAATATGC
ATTTCACACTATAGTTGATTTCTTAGCTTGATTTGAATTCCTTGATCCCTGCATATCTGA
CCATTTTGGAACATTTAGGTATTGTGTTGCTGCCCTCTTCATTCATTCTTTGTCCTTGTA
ATTGAATTCTTTTCAATCCAATAGTCTGCTTTTCTTGCAAGTATTTTTGGCTTACCTTTC
TACATTTTCTTTGTAAATCCATGTTTAATTTGTTTAGAATTAATTGGAGCAATAATTCTT
TTCAGAGATGTATTGCAAAATTTTAGGCATAAAACATTTGTATACAAATGACAATATCAA
TTTCAAATATATTTGTTTGCACAAATGCACATTCTTCATGAGTAGCATGTCCATGGATCT
CCTTTGCTTTCCCCTAGTTTTACATGAACCTTTAGAAAGTCGTTCTGCTTTCTCAATCAA
GCTCCTCATCATCGGTATCACTGCCAAGTGTGAACTGGTCAAAAAGGATGGTTGTAATCA
GCATTCTTTTCAGTTGATTCACGATAGTGACCTCTGATGCAGCACCTTACACATTACAGC
CTACGTTGGACTGGCATGTCCTACAGAATTTTGTTTGGGTTATGGATATTGATGCTGTTA
CATTATTGGATAAGTGGTTACCCAGGCATGCCAGTTGCAGTCTTCCAACATTTTTTGATA
AGGCTGAGAGGTTAATCACCATCAATTCCACATCCAGCAGTGATTGATGCCTGGTTCAGT
TTTTCAGCTCCTTCGACTTGTGTTTTAGAATTCAAAAGTGCAGCACTGTGGACTTTTTGG
TGCTTGTCTAGACCATGTACCTTCTATGGGGATCGACAATGTTGATGTTCCAGCGTGGTC
CAGCATGGTATTCAGGACAACACATCAATTTTGATTAAGTACTGATAATATTTGTTGATT
TTGCAGATGTGAAGGACATAAAGTGTGTGATAAATTATGATTTTCCAACAACTCTTGAAG
ATTATATTCACAGGATAGGTCGAACTGGCCGTGCTGGTGCTAGCGGAACTGCATTTACTT
TTTTCACACACGCAAATGCAAAGTTCTCAAGGAATCTAGTGAAGATTCTGCGAGAAGCTG
GCCAAGTTGTGAATCCTGCCTTAGAATCCATGTCCAGGTCTTCGAACTCAACGGGAGGAG
GCAATTTTCGGTCGAGAGGCAGAGGTGGGTTTGGTAACCGGGGCCATATGTCTGGATCAA
ATACCTTTCCTTTAGGAGGAAGAAGGCCATATTGATGTGTGCAAAAGAACTGTGGGAGTA
TGGGACTATTTGTATACTACTCGGCATTAAGTGCATTCTTTGGGAAATTTCTGAGAAATT
TCCCCTAC