Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042398_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:3:164486974:164493005:-1 gene:Zm00001d042398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
Sequence

ATGCCCCAGTCTCCTAAACCCTACACATCTCTCTCGGCCACGGTAATTGCCATCGCCATG
GCCGGGAGGCGCCCGGCACCGGTGGCCATCCTCCTTCTCCTCGCCGCGGCATTCGCCCCC
ATCTCCTCCGCCGTTCGCCCAGTCTCCGACGCGCACAGATCCGCTGCCGTGGAGCTTTTC
GCCCCCTCCGCTGACGGATCCTTCGGCGATTTGGAGAGTACGTATGAGGCGGTGAGGACT
TTCCAGATACTCGGGCTGGAGAACTATAAGAGTCTGTCTGGGAAGGCGTGCAAGTTTGCC
GCGGAGAACCTGGCTTCCCCCGGTTCCACCACGAAAGATCTGTTCCATGCTGTCCGGATC
AGTGGCGCGCTTGGATGCGCTGTTGATGCCGGCGTGTACGATGGTGTTGTGGCGAGGCTC
AAGGCAGTGATTCAGGATACTAATTCCCTGTTGGAATTATACTATCCTGTGGGAGGTTTG
CTTGGCATCAAGGAACAAGGCCATAATGTTGTTCTGTCTGATGCAGAAGGTACATTCCAT
GCCACTAAGGCACTTAGCCAAAGTGACGGGAGATGGCGTTATGACACTGACAGTGCTGAG
TCTAGCACATTTGCTGCTGGTATTGCACTAGAAGCATTAGCAGGTATTGTTTCACTGGCA
GATGCAGCGGTTGACCCATCCATGATGGGAGTGGTTAAAAATGACGTCGTGAAGCTGTTT
GACACCATCAAGAGCTACAATGATGGGACCTTCTACTTTGATGAAAAGCATGTTGATGCT
ACTGAATACAAGGGCCCTATAATCACATCTGCTTCAGTGGTGCGGGGTGTCACCTCTTTT
GCAGCTGTTGTTTCTGGAAAATTGAATATCCCTGCCGAGAAAATACTTGGCCTGGCAAAA
TTCTTCCTTGGTATTGGGCTCCCAGGTAGCGCAAAGGATTGCTTTAATCAGATTGAGTCT
TTGTCATTCTTGGAGAACAATAGGGTCTTCGTTCCGTTGATACTATCACTTTCTTCCAAA
GTATTTTCATTGACTTCGAAAGATCAGCTCAAGGTTGAAGTTACATCAGTTTTTGGATCT
GCTGCACCTTCACTCAAAGTGAATCTTGTGCAAGTGTTGGGATCTGACTCTAAAGTCATC
ACCAGTGAGAACAAGGAACTTCAATACGACCTTGACAACAATGTCCATTACTTGGACATT
GCTCCATTGAAAATTGATGTTGGGAAATACTCGATAGTTTTTGAGATTTCACTTCAGGAA
CCAGAGCAGGAGACTGTTTATGCTACTGGAGGGAGAAACACTGAAAGTGTAATTGTCACA
GGACTGATCAAAGTTGACAAGGCAGAAATAGGAATCTCTGACAATGATGCTGGGGCCGTG
GAGTCTGTCCAAAAGTTAGATCTTCTGAAAGATACAAAAGTGTCTCTTTCTGCAAACCAT
CTGCAGAAACTGTGTTTATCTTTTCAACTAACCACACCGCTTGGGCACACATTTAAACCT
CACCAGGTGTTCTTGAAATTGAGGCATGAGAGTAAGGTTGAACACTTATTCGTGGTACCT
GGCTCTGCAAGGCAGTTCAAAATTGTTCTTGACTTCCTAGGTTTGGTGGAGAAATTTTAC
TACCTTTCTGGAAGATATGACCTTGAGCTTACCGTTGGTGATGCTGTAATGGAAAATTCA
TTTCTACGACCTCTTGGCCATTTGGAGTTGGACCTGCCAGATGCCCCAGAAAAAGCCCCA
CGTCCTCCTGCACAAGCTGTTGACCCATTCTCAAAATTTGGGCCAAAGGCAGAGATATCA
CATATATTCCGCGCACCAGAGAAGAGGCCACCCAAGGAGCTCTCGCTAGCGTTCACGGGT
CTCACGCTTCTGCCGTTTATTGGATTCTTGATAGGGCTCGTTCGTCTTGGAGTGAACTTG
AAGAACTTCCCGTCCTTGCCAGGACCGGCCGCATTTGCCTCACTTTTCCATGCTGGGATA
GGAGCAGTCCTGATGCTCTACGTTCTCTTCTGGATCAAGTTGGACCTTTTCACAACTCTC
AAGTACCTCGGCTTCCTCGGCATCTTCCTTGTGTTTGTGGGCCATAGGGCTCTATCCTAC
CTTTCCTCGGTGTCGACAAAACAGAAGACGGCATGA

Peptide Sequence

PEP ID

Zm00001d042398_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:3:164486974:164493005:-1 gene:Zm00001d042398 transcript:Zm00001d042398_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
Sequence

MPQSPKPYTSLSATVIAIAMAGRRPAPVAILLLLAAAFAPISSAVRPVSDAHRSAAVELF
APSADGSFGDLESTYEAVRTFQILGLENYKSLSGKACKFAAENLASPGSTTKDLFHAVRI
SGALGCAVDAGVYDGVVARLKAVIQDTNSLLELYYPVGGLLGIKEQGHNVVLSDAEGTFH
ATKALSQSDGRWRYDTDSAESSTFAAGIALEALAGIVSLADAAVDPSMMGVVKNDVVKLF
DTIKSYNDGTFYFDEKHVDATEYKGPIITSASVVRGVTSFAAVVSGKLNIPAEKILGLAK
FFLGIGLPGSAKDCFNQIESLSFLENNRVFVPLILSLSSKVFSLTSKDQLKVEVTSVFGS
AAPSLKVNLVQVLGSDSKVITSENKELQYDLDNNVHYLDIAPLKIDVGKYSIVFEISLQE
PEQETVYATGGRNTESVIVTGLIKVDKAEIGISDNDAGAVESVQKLDLLKDTKVSLSANH
LQKLCLSFQLTTPLGHTFKPHQVFLKLRHESKVEHLFVVPGSARQFKIVLDFLGLVEKFY
YLSGRYDLELTVGDAVMENSFLRPLGHLELDLPDAPEKAPRPPAQAVDPFSKFGPKAEIS
HIFRAPEKRPPKELSLAFTGLTLLPFIGFLIGLVRLGVNLKNFPSLPGPAAFASLFHAGI
GAVLMLYVLFWIKLDLFTTLKYLGFLGIFLVFVGHRALSYLSSVSTKQKTA

Transcript Sequence

Transcript ID

Zm00001d042398_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:164486974:164493005:-1 gene:Zm00001d042398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
Sequence

TTCTAACCTCCAGATCTGGCCACTCCCACATGCCCCAGTCTCCTAAACCCTACACATCTC
TCTCGGCCACGGTAATTGCCATCGCCATGGCCGGGAGGCGCCCGGCACCGGTGGCCATCC
TCCTTCTCCTCGCCGCGGCATTCGCCCCCATCTCCTCCGCCGTTCGCCCAGTCTCCGACG
CGCACAGATCCGCTGCCGTGGAGCTTTTCGCCCCCTCCGCTGACGGATCCTTCGGCGATT
TGGAGAGTACGTATGAGGCGGTGAGGACTTTCCAGATACTCGGGCTGGAGAACTATAAGA
GTCTGTCTGGGAAGGCGTGCAAGTTTGCCGCGGAGAACCTGGCTTCCCCCGGTTCCACCA
CGAAAGATCTGTTCCATGCTGTCCGGATCAGTGGCGCGCTTGGATGCGCTGTTGATGCCG
GCGTGTACGATGGTGTTGTGGCGAGGCTCAAGGCAGTGATTCAGGATACTAATTCCCTGT
TGGAATTATACTATCCTGTGGGAGGTTTGCTTGGCATCAAGGAACAAGGCCATAATGTTG
TTCTGTCTGATGCAGAAGGTACATTCCATGCCACTAAGGCACTTAGCCAAAGTGACGGGA
GATGGCGTTATGACACTGACAGTGCTGAGTCTAGCACATTTGCTGCTGGTATTGCACTAG
AAGCATTAGCAGGTATTGTTTCACTGGCAGATGCAGCGGTTGACCCATCCATGATGGGAG
TGGTTAAAAATGACGTCGTGAAGCTGTTTGACACCATCAAGAGCTACAATGATGGGACCT
TCTACTTTGATGAAAAGCATGTTGATGCTACTGAATACAAGGGCCCTATAATCACATCTG
CTTCAGTGGTGCGGGGTGTCACCTCTTTTGCAGCTGTTGTTTCTGGAAAATTGAATATCC
CTGCCGAGAAAATACTTGGCCTGGCAAAATTCTTCCTTGGTATTGGGCTCCCAGGTAGCG
CAAAGGATTGCTTTAATCAGATTGAGTCTTTGTCATTCTTGGAGAACAATAGGGTCTTCG
TTCCGTTGATACTATCACTTTCTTCCAAAGTATTTTCATTGACTTCGAAAGATCAGCTCA
AGGTTGAAGTTACATCAGTTTTTGGATCTGCTGCACCTTCACTCAAAGTGAATCTTGTGC
AAGTGTTGGGATCTGACTCTAAAGTCATCACCAGTGAGAACAAGGAACTTCAATACGACC
TTGACAACAATGTCCATTACTTGGACATTGCTCCATTGAAAATTGATGTTGGGAAATACT
CGATAGTTTTTGAGATTTCACTTCAGGAACCAGAGCAGGAGACTGTTTATGCTACTGGAG
GGAGAAACACTGAAAGTGTAATTGTCACAGGACTGATCAAAGTTGACAAGGCAGAAATAG
GAATCTCTGACAATGATGCTGGGGCCGTGGAGTCTGTCCAAAAGTTAGATCTTCTGAAAG
ATACAAAAGTGTCTCTTTCTGCAAACCATCTGCAGAAACTGTGTTTATCTTTTCAACTAA
CCACACCGCTTGGGCACACATTTAAACCTCACCAGGTGTTCTTGAAATTGAGGCATGAGA
GTAAGGTTGAACACTTATTCGTGGTACCTGGCTCTGCAAGGCAGTTCAAAATTGTTCTTG
ACTTCCTAGGTTTGGTGGAGAAATTTTACTACCTTTCTGGAAGATATGACCTTGAGCTTA
CCGTTGGTGATGCTGTAATGGAAAATTCATTTCTACGACCTCTTGGCCATTTGGAGTTGG
ACCTGCCAGATGCCCCAGAAAAAGCCCCACGTCCTCCTGCACAAGCTGTTGACCCATTCT
CAAAATTTGGGCCAAAGGCAGAGATATCACATATATTCCGCGCACCAGAGAAGAGGCCAC
CCAAGGAGCTCTCGCTAGCGTTCACGGGTCTCACGCTTCTGCCGTTTATTGGATTCTTGA
TAGGGCTCGTTCGTCTTGGAGTGAACTTGAAGAACTTCCCGTCCTTGCCAGGACCGGCCG
CATTTGCCTCACTTTTCCATGCTGGGATAGGAGCAGTCCTGATGCTCTACGTTCTCTTCT
GGATCAAGTTGGACCTTTTCACAACTCTCAAGTACCTCGGCTTCCTCGGCATCTTCCTTG
TGTTTGTGGGCCATAGGGCTCTATCCTACCTTTCCTCGGTGTCGACAAAACAGAAGACGG
CATGAGTGGACAGAGTTTTTTCCGACCATCCATTTCTTGAGGGGGGGCCATTGCAGGCCC
TTGGGTGTCTT