Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042366_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:163354669:163357556:-1 gene:Zm00001d042366 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGGGTGTGGAGGGAGGGCGCGGGCTGGTGCTTCTGCTCCGGCGGGGGCGGCGACGAC
GGGGGCCGGTCGGAGCGGGTCAAGGCGGCGATCTTCTCCGCCAGGGCCTCCGCGCTGGCG
GCCGTCCGTGCGCAGGGGCGGCATCACGGCAGCGGGCTCCTGATCCACCGGAACCTGCTG
CTCACCACGCACGGCAACCTGCCCTCCGCGGCCGCCGCCGAGGACGCCGACGCGCTGCTC
GGCCAGGGCCGCCTCGTCGCGCGGCTCGAGCCGCACAGATTTTTCATCAGCAGCTCGATT
CTTGATCTTACAATAGTTGGTATTGATTATACAGAGGGTGACTCGACCCTACAGGGTCAG
CAACCTCACTATTTGAAAACAAGCTGCAAACCAAGCCTAGATCATGGGAGTCCCGTGTAC
CTGCTGGGACATACAGGGAAAAAAGAACTGGTGATTGGTGAGGGCAAGGTGGTTATTGGC
ACAGACAACCTCATAAAACTCTCAGCCGAGGGGGTGACATGGTGTCCTGGGTCTGCTGGT
TTTGATGCCCAAGGGAACCTAGCTTTCATGATCTGTGATCCAATGAAGCTGGCCTCTTCT
CCCACCGCAAGATCATCCTCGGCATCCTCATCCTCATCACATTCATGGAAGAAGGATCAG
CCAATGCAATTTGGGATTCCCATATCTGTAGTTTGTGATTGGTTATATCAGCACTGGCAG
GGCAGCTTGGACGAGGTTAGCAAGCCAAAGTTACCTCTTGTTCGGCTGATGTCCAGCAGG
AGTGATCACTCAAGCACCTCGTTCACTCGTCGTCATGTGTTCAAGCCTGACGATGAGAAC
GATGATGCATCCGTTTGTTCAAAGCCTAAACATCAGCAGGTATCAGGTAGCACAGCCACT
GCAAGGATTTCACATGAAGCAAATCCTATAGTTGATCTGCGCACAAGCTGTGAGCAGGGT
GTTACGACTCCAGAAATATATGAATCGCCAAGGCGAAGTTCTTGTCAGGCTCAGAAGAAC
GCTGCTGCACCAATTCAACTCTTGGACATCAACTTCCCACCCAGGGTTCCAAAGACTATA
TTTCTACCATTGCCTCTGAAGCAAATGCTTTCTGATGAGAACAATGTTGAAACGTCGAAG
CCAAAATATCGGTCAAAAGACAATGGCTTCCCATCAGGGCTGATATGGCACCGCAATATT
GAGGCTGAGTGTAGGGACCCTCCGGTAGCTCTTCAGCATATGGATTGCAGCAGCGAGGGA
CAGTCGAGCTCATCACCTGCTGAGATACCGGAGTATGGATGCCAAGACCAGTACGATAGC
GAGGAGGAAACAATGTACTCAGCTGAAACCATGGAAAGCAGGAACATTCCAAGCCCCAGG
GAGAAACATGTGGGGAGGAGCCAGAGCTGTGTTACCTACAGCAGGTGGAGCTCTCCAAGG
ACCTCATCAATGCAGAATGGAACCTTGCGAAAGCAGCATACACTGATCCCTGTGCGGAAG
ACGCACTCGCAGAACACGACTCTTCCGCAGAGGAGTCATGACTACTTAAGCCCAACAGTT
TCCTCAGCCATGAAGAAGAGGAACTCCATGGAACAGCAGCAGGCCACAAAGCCTCGACGG
AGCACCATACAGTCTTCTCCAAAATGGATGTTTTGA

Peptide Sequence

PEP ID

Zm00001d042366_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:163354669:163357556:-1 gene:Zm00001d042366 transcript:Zm00001d042366_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGVWREGAGWCFCSGGGGDDGGRSERVKAAIFSARASALAAVRAQGRHHGSGLLIHRNLL
LTTHGNLPSAAAAEDADALLGQGRLVARLEPHRFFISSSILDLTIVGIDYTEGDSTLQGQ
QPHYLKTSCKPSLDHGSPVYLLGHTGKKELVIGEGKVVIGTDNLIKLSAEGVTWCPGSAG
FDAQGNLAFMICDPMKLASSPTARSSSASSSSSHSWKKDQPMQFGIPISVVCDWLYQHWQ
GSLDEVSKPKLPLVRLMSSRSDHSSTSFTRRHVFKPDDENDDASVCSKPKHQQVSGSTAT
ARISHEANPIVDLRTSCEQGVTTPEIYESPRRSSCQAQKNAAAPIQLLDINFPPRVPKTI
FLPLPLKQMLSDENNVETSKPKYRSKDNGFPSGLIWHRNIEAECRDPPVALQHMDCSSEG
QSSSSPAEIPEYGCQDQYDSEEETMYSAETMESRNIPSPREKHVGRSQSCVTYSRWSSPR
TSSMQNGTLRKQHTLIPVRKTHSQNTTLPQRSHDYLSPTVSSAMKKRNSMEQQQATKPRR
STIQSSPKWMF

Transcript Sequence

Transcript ID

Zm00001d042366_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:163354669:163357556:-1 gene:Zm00001d042366 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GGAGAAGAAAACGAAACAGAACGGCCAGTGGAAGCCGCCGTGCCGTGCCGAGGCGGACGG
ACAGTCGGACACTGTCCGAGGAAGCCAGGAAGGATACCCACCCGCACCGACTCCGCCGCG
GAGGAATGCGGCGACGACCAGCGCCGCCGCCGCCGCTGTAACGGTAGCTAGCTGGCCGCT
CGGGTCGGAGGGAGGAGGAGGAGGAGGCTAATGGGGGTGTGGAGGGAGGGCGCGGGCTGG
TGCTTCTGCTCCGGCGGGGGCGGCGACGACGGGGGCCGGTCGGAGCGGGTCAAGGCGGCG
ATCTTCTCCGCCAGGGCCTCCGCGCTGGCGGCCGTCCGTGCGCAGGGGCGGCATCACGGC
AGCGGGCTCCTGATCCACCGGAACCTGCTGCTCACCACGCACGGCAACCTGCCCTCCGCG
GCCGCCGCCGAGGACGCCGACGCGCTGCTCGGCCAGGGCCGCCTCGTCGCGCGGCTCGAG
CCGCACAGATTTTTCATCAGCAGCTCGATTCTTGATCTTACAATAGTTGGTATTGATTAT
ACAGAGGGTGACTCGACCCTACAGGGTCAGCAACCTCACTATTTGAAAACAAGCTGCAAA
CCAAGCCTAGATCATGGGAGTCCCGTGTACCTGCTGGGACATACAGGGAAAAAAGAACTG
GTGATTGGTGAGGGCAAGGTGGTTATTGGCACAGACAACCTCATAAAACTCTCAGCCGAG
GGGGTGACATGGTGTCCTGGGTCTGCTGGTTTTGATGCCCAAGGGAACCTAGCTTTCATG
ATCTGTGATCCAATGAAGCTGGCCTCTTCTCCCACCGCAAGATCATCCTCGGCATCCTCA
TCCTCATCACATTCATGGAAGAAGGATCAGCCAATGCAATTTGGGATTCCCATATCTGTA
GTTTGTGATTGGTTATATCAGCACTGGCAGGGCAGCTTGGACGAGGTTAGCAAGCCAAAG
TTACCTCTTGTTCGGCTGATGTCCAGCAGGAGTGATCACTCAAGCACCTCGTTCACTCGT
CGTCATGTGTTCAAGCCTGACGATGAGAACGATGATGCATCCGTTTGTTCAAAGCCTAAA
CATCAGCAGGTATCAGGTAGCACAGCCACTGCAAGGATTTCACATGAAGCAAATCCTATA
GTTGATCTGCGCACAAGCTGTGAGCAGGGTGTTACGACTCCAGAAATATATGAATCGCCA
AGGCGAAGTTCTTGTCAGGCTCAGAAGAACGCTGCTGCACCAATTCAACTCTTGGACATC
AACTTCCCACCCAGGGTTCCAAAGACTATATTTCTACCATTGCCTCTGAAGCAAATGCTT
TCTGATGAGAACAATGTTGAAACGTCGAAGCCAAAATATCGGTCAAAAGACAATGGCTTC
CCATCAGGGCTGATATGGCACCGCAATATTGAGGCTGAGTGTAGGGACCCTCCGGTAGCT
CTTCAGCATATGGATTGCAGCAGCGAGGGACAGTCGAGCTCATCACCTGCTGAGATACCG
GAGTATGGATGCCAAGACCAGTACGATAGCGAGGAGGAAACAATGTACTCAGCTGAAACC
ATGGAAAGCAGGAACATTCCAAGCCCCAGGGAGAAACATGTGGGGAGGAGCCAGAGCTGT
GTTACCTACAGCAGGTGGAGCTCTCCAAGGACCTCATCAATGCAGAATGGAACCTTGCGA
AAGCAGCATACACTGATCCCTGTGCGGAAGACGCACTCGCAGAACACGACTCTTCCGCAG
AGGAGTCATGACTACTTAAGCCCAACAGTTTCCTCAGCCATGAAGAAGAGGAACTCCATG
GAACAGCAGCAGGCCACAAAGCCTCGACGGAGCACCATACAGTCTTCTCCAAAATGGATG
TTTTGATGGTTCTATCTATATCTGGTTTTGAGGTGGAAACAATGAAGAAAGCAAGTGCCT
ACTCGAATGGCATGGATAAATAAAG