Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042312_T013
CDS Infomation

cds chromosome:B73_RefGen_v4:3:160476435:160479257:1 gene:Zm00001d042312 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:histidine kinase2 description: histidine kinase2
Sequence

ATGGCAATAACGACATCAATTGGAACTCTAGTGATTGCTTTACTGATTGGATACATAGTT
CATGCTACCGCAAAACGGATTGCCAGAGTTGAAGATGACTTTCAGGAGATGAGTTTGCTC
AAGAAGCGCGCAGAGGATGCAGATATTGCCAAGTCACAGTTCTTGGCTACTGTTTCTCAT
GAGATCAGAACTCCAATGAATGGTGTCCTAGGGATGCTCCAAATGCTCATGGATACTGAT
TTGGACACAACACAACAAGACTATGTTAGAACCGCACAAGCCAGTGGCAAAACTCTGGTA
TCCCTCATCAATGAGGTTCTTGATCAGGCAAAGATCGAGTCTGGTAAACTTGAGCTTGAG
GTGGTACCCTTTGATCTTAGAACAGTTTGTGATGACATTTTGTCTCTCTTCTGTGGGAAA
GCACAGGAGAAAGGACTGGAGTTGGCAGTGTTTGTTTCTGATCAAGTTCCACAAACACTA
ATTGGCGATCCTGGAAGAATAAGGCAAATCATTACAAATCTTGTTGGAAACTCTATAAAA
TTCACAGAGAAGGGTCATATCTACTTGACGGTTCATGTCGTTGAAGAGATTATGCATTGT
CTGGAGGTTGAGACGGGAACTCAGTATACAAATACCTTAAGTGGCTACCCAGTGGCGAAC
AGGAAGCGCAGTTGGGAAAACTTTCGACTTTTTAGTAGGGAACTGAACTCATCCGAGATG
CCTTTTGCACCCATTGCATCAGACTCAATAAGCTTGATGATATCAGTTGAAGATACGGGT
GCTGGAATCCCGTTCGATGCTCAATCCCGTGTCTTCACCCCTTTCATGCAAGTAGGTCCA
TCCATCGCTCGCATACACGGGGGCACTGGCATTGGATTAAGCATCAGCAAATGCTTGGTT
GGCCTCATGAAGGGAGAGATCGGATTTTCAAGTAAACCCCAAGTTGGTTCTACTTTCACC
TTCACTGCAGTGCTTACGAGGGTCCATTCCAGCAGAAATGAGAATAAATCATCAGAATTT
AAAGAGATCAATGCATTGGTGGTAGATCATAGACCGGTCCGTGCCAAGGTTACTAAGTAT
CATTTGCAAAGACTGGGAGTTCAGACTGAATTGACAACTGACCTAGATCAGTATATTTCT
AAAAATAATTGTGGATCACAGATTGCAAAGCTTGTGCTCATTGACAAAGAAACCTGGCTG
AAAGAATCCCACTCCATGCCTCTTTTGGTTACTAAATTGAGGAACAAAGATCAGCCAGAC
TCTACAAAGTTATTTCTTTTGGAGAACCCTAAAAGTTCTGTCAAGAGCAATTCACATATA
TTCAGGGAATATAACTTGAATGTAATTATGAAGCCACTTCGTGCAAGCATGCTTCAGGTT
TCGCTACAAAGAGCATTGGGTGGGATAGATAAACTGCATTGCAGGAATGGAGTAGTCGGC
AATTCAACACTGGGCAGCCTTCTTCACAAGAAGCGAATCATAGTGGTTGATGATAATATT
GTAAATCTCAAGGTTGCTGCAGGCGCTCTAAAGAAATATGGCGCGGAAGTAACTTGTGCT
GACAGTGGGAAGGAAGCAATCACACTGCTGAAACCTCCTCACAATTTTGATGCTTGTTTC
ATGGACATACAGATGCCTGAAATGGATGGATTTGAAGCCACAAAAAGGATTAGAGTGATG
GAAAGAGATCTAAATGAGCAAATAGAACGTGGAGAAGCCCCACCAGAATGCGTAGGGGTT
CGGCAGTGGCGAACTCCAATATTAGCCATGACAGCAGATGTTATCCAGGCGACACATGAA
CAATGCTTGAAATCTGAAATGGACGGTTATGTTTCCAAGCCATTCGAGGGCGAGCAATTG
TACAGAGAAGTAGCTCGCTTTTTCCTAAATCAAGACCAAGTTCAGTAG

Peptide Sequence

PEP ID

Zm00001d042312_P013
PEP Infomation

pep chromosome:B73_RefGen_v4:3:160476435:160479257:1 gene:Zm00001d042312 transcript:Zm00001d042312_T013 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:histidine kinase2 description: histidine kinase2
Sequence

MAITTSIGTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSH
EIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELE
VVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVGNSIK
FTEKGHIYLTVHVVEEIMHCLEVETGTQYTNTLSGYPVANRKRSWENFRLFSRELNSSEM
PFAPIASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLV
GLMKGEIGFSSKPQVGSTFTFTAVLTRVHSSRNENKSSEFKEINALVVDHRPVRAKVTKY
HLQRLGVQTELTTDLDQYISKNNCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPD
STKLFLLENPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVG
NSTLGSLLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACF
MDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVRQWRTPILAMTADVIQATHE
QCLKSEMDGYVSKPFEGEQLYREVARFFLNQDQVQ

Transcript Sequence

Transcript ID

Zm00001d042312_T013
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:160476435:160479257:1 gene:Zm00001d042312 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:histidine kinase2 description: histidine kinase2
Sequence

AGGTTCATTCAGAGCCCACCTTGGCCTTGGATGGCAATAACGACATCAATTGGAACTCTA
GTGATTGCTTTACTGATTGGATACATAGTTCATGCTACCGCAAAACGGATTGCCAGAGTT
GAAGATGACTTTCAGGAGATGAGTTTGCTCAAGAAGCGCGCAGAGGATGCAGATATTGCC
AAGTCACAGTTCTTGGCTACTGTTTCTCATGAGATCAGAACTCCAATGAATGGTGTCCTA
GGGATGCTCCAAATGCTCATGGATACTGATTTGGACACAACACAACAAGACTATGTTAGA
ACCGCACAAGCCAGTGGCAAAACTCTGGTATCCCTCATCAATGAGGTTCTTGATCAGGCA
AAGATCGAGTCTGGTAAACTTGAGCTTGAGGTGGTACCCTTTGATCTTAGAACAGTTTGT
GATGACATTTTGTCTCTCTTCTGTGGGAAAGCACAGGAGAAAGGACTGGAGTTGGCAGTG
TTTGTTTCTGATCAAGTTCCACAAACACTAATTGGCGATCCTGGAAGAATAAGGCAAATC
ATTACAAATCTTGTTGGAAACTCTATAAAATTCACAGAGAAGGGTCATATCTACTTGACG
GTTCATGTCGTTGAAGAGATTATGCATTGTCTGGAGGTTGAGACGGGAACTCAGTATACA
AATACCTTAAGTGGCTACCCAGTGGCGAACAGGAAGCGCAGTTGGGAAAACTTTCGACTT
TTTAGTAGGGAACTGAACTCATCCGAGATGCCTTTTGCACCCATTGCATCAGACTCAATA
AGCTTGATGATATCAGTTGAAGATACGGGTGCTGGAATCCCGTTCGATGCTCAATCCCGT
GTCTTCACCCCTTTCATGCAAGTAGGTCCATCCATCGCTCGCATACACGGGGGCACTGGC
ATTGGATTAAGCATCAGCAAATGCTTGGTTGGCCTCATGAAGGGAGAGATCGGATTTTCA
AGTAAACCCCAAGTTGGTTCTACTTTCACCTTCACTGCAGTGCTTACGAGGGTCCATTCC
AGCAGAAATGAGAATAAATCATCAGAATTTAAAGAGATCAATGCATTGGTGGTAGATCAT
AGACCGGTCCGTGCCAAGGTTACTAAGTATCATTTGCAAAGACTGGGAGTTCAGACTGAA
TTGACAACTGACCTAGATCAGTATATTTCTAAAAATAATTGTGGATCACAGATTGCAAAG
CTTGTGCTCATTGACAAAGAAACCTGGCTGAAAGAATCCCACTCCATGCCTCTTTTGGTT
ACTAAATTGAGGAACAAAGATCAGCCAGACTCTACAAAGTTATTTCTTTTGGAGAACCCT
AAAAGTTCTGTCAAGAGCAATTCACATATATTCAGGGAATATAACTTGAATGTAATTATG
AAGCCACTTCGTGCAAGCATGCTTCAGGTTTCGCTACAAAGAGCATTGGGTGGGATAGAT
AAACTGCATTGCAGGAATGGAGTAGTCGGCAATTCAACACTGGGCAGCCTTCTTCACAAG
AAGCGAATCATAGTGGTTGATGATAATATTGTAAATCTCAAGGTTGCTGCAGGCGCTCTA
AAGAAATATGGCGCGGAAGTAACTTGTGCTGACAGTGGGAAGGAAGCAATCACACTGCTG
AAACCTCCTCACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGGA
TTTGAAGCCACAAAAAGGATTAGAGTGATGGAAAGAGATCTAAATGAGCAAATAGAACGT
GGAGAAGCCCCACCAGAATGCGTAGGGGTTCGGCAGTGGCGAACTCCAATATTAGCCATG
ACAGCAGATGTTATCCAGGCGACACATGAACAATGCTTGAAATCTGAAATGGACGGTTAT
GTTTCCAAGCCATTCGAGGGCGAGCAATTGTACAGAGAAGTAGCTCGCTTTTTCCTAAAT
CAAGACCAAGTTCAGTAGGTAGGCTTATATGGAGTGTAAAATAGTGGAGGATATCAGGGT
TCACCCATCGAGGCTGAAAGAATTTTGTCAGAGATCCCATGTTCTTGAGAGTAAGTTCTT
GACTTCTCTAGTTTCTTGGGAGTTCATTTTCCCCTAGCCCTAGTTTCTTTTTTCTTATTC
ATGCTGTAACATGTGAGGCTGGTATGCACAGAATATAAATGAGTAGCAACAATTGTGGGT
CAATTCTTTCAAACGGTCAGTATCATTTGAGTTT