Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042285_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:158984072:158988815:1 gene:Zm00001d042285 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGCTGCATCCTCGGTAAGCTCGCCCCCGCGCCCGGGTCCTCCCTCTTCTTCCCCGCC
GCCGCGGGAGGAGGCGACGCCAACAAGGAGCCGCAGCTGCAGGCGCCGCAACCGGAGCAC
ATCGCTGCGGTGAAGAAGGACGCGTCCGGGTGGCCTCTCTGGCTCTCCGAGGCCGCCGGC
GACGCGCTCCGCGGCTGGGCGCCCCGCGGCGCCGACGCCTTCCAGAAGCTCGAGAAGATT
GGTTCGGGCACGTACAGCAACGTGTACAAGGCGATTGAGGTGGAGAGCGGCCGCGTGGTG
GCGCTGAAGAAGGTGCGGGTGGATGGCGTCGGCGAGGCCGAGAGCGCGCGGTTCATGGCG
CGGGAGATCGCCCTGCTCCGCCGCCTCGGCGACCACCCCAACGTCGTCCGCCTCAACGGC
CTCGTCACCTCCCGCCTCAACACGGCGCCGTCCCTCTACCTCGTCTTCGAGTACATGGAG
CACGACCTGACTGGCCTCACCGCCTGCGCAACTGCCTCCGGCCGCCGCTTGTCCTTGCCT
CAGGTGAAGTGCTACATGAAACAGCTACTCTCCGGGATCGAACACTGCCACAACAACGGC
GTTCTGCACCGTGACATCAAGACCTCCAACTTACTCGTCAGCAGCGACGGAGTTCTCAAA
ATAGCCGACTTTGGACTCGCCACCTCTTACGATCCTGAGAACGTGCGGCCCATGACTAGC
CAAGTGATCACTCTTTGGTATCGTCCACCTGAACTCTTGCTAGGGGCGACTCACTACGGC
GTCGGTGTGGACCTCTGGAGCGTGGGTTGCATACTGGCAGAACTGCTTCTCGGCGAGCCG
ATGTTCCCCGGAAGAACAGAGGTGGAACAGCTGCACAAGGTTTTCAAGCTATGTGGTACT
CCATCGGAGGATTACTGGGAGAAGATGAAGCTTGCTCATCCTTTATTCAAGCCATATGAA
CGGTGCCTAGCTGAAAAGTTTAAAGACGTGCCACCGTCTACCCTATCGCTTCTCGAGACT
CTCCTGTCGATTGACCCAGATATGAGAGGCACGGCAACCGATGCTCTGAACAGCGAGTTC
TTCAGGACGGAACCATACGCCTGTGAACCATCCAGCCTCCCACGCTACCCACCATGCAAA
GAAAGAGACGTGAAGCTGAAGTATGAGAAGCATAAAAGGAAGTCCAGGGTTAATGGGTCA
GTAGAGCGTCACAGGAACCGACAGCACGCGTCGCAAAATCCTGGGCGTAGAGTTTTTACT
CCAGACGCCAGTAATAAGCCGCAAGCAAATCTAAAGGTACCAAGGTTGGTGACAAGCACA
AGCACAACCAAACTTGAGAGATTTCCGCCGCCTCATCTGGACGCGTCGATTGGTTATAGT
CTAGATTCATCAGTGGATGGAGCCACAGAAGAGTTCTTCTCGTCGTCGGTCGTTGAGCTA
AAGAAAATGCCAAGCCTCATATTTGGTCACGTGAAATCTTACCTGAATAGCCCAAAGAAG
GGCATGCACAGCAAGGCAAGGCCAAGCCTCAACATGGCGCCTCCCACCGTTCTCATTGGC
GCATTCCGGCCTTACTCCTTTGGGCAGCCAATGGAGGTGAGAAGAAAGAATAGAGAGCAA
TTCAGAAGCAAAGGAAGAAATGCAGTAGGTGCAGTCAAGTGA

Peptide Sequence

PEP ID

Zm00001d042285_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:158984072:158988815:1 gene:Zm00001d042285 transcript:Zm00001d042285_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGCILGKLAPAPGSSLFFPAAAGGGDANKEPQLQAPQPEHIAAVKKDASGWPLWLSEAAG
DALRGWAPRGADAFQKLEKIGSGTYSNVYKAIEVESGRVVALKKVRVDGVGEAESARFMA
REIALLRRLGDHPNVVRLNGLVTSRLNTAPSLYLVFEYMEHDLTGLTACATASGRRLSLP
QVKCYMKQLLSGIEHCHNNGVLHRDIKTSNLLVSSDGVLKIADFGLATSYDPENVRPMTS
QVITLWYRPPELLLGATHYGVGVDLWSVGCILAELLLGEPMFPGRTEVEQLHKVFKLCGT
PSEDYWEKMKLAHPLFKPYERCLAEKFKDVPPSTLSLLETLLSIDPDMRGTATDALNSEF
FRTEPYACEPSSLPRYPPCKERDVKLKYEKHKRKSRVNGSVERHRNRQHASQNPGRRVFT
PDASNKPQANLKVPRLVTSTSTTKLERFPPPHLDASIGYSLDSSVDGATEEFFSSSVVEL
KKMPSLIFGHVKSYLNSPKKGMHSKARPSLNMAPPTVLIGAFRPYSFGQPMEVRRKNREQ
FRSKGRNAVGAVK

Transcript Sequence

Transcript ID

Zm00001d042285_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:158984072:158988815:1 gene:Zm00001d042285 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GACGGTCTCCCATTTCGCTCTCCCCCTCACCTTCCCGCGTCCTCCCTACGTTTCCCAGCA
ACCGCCTCCGCCGCCGTGGGCGACCTGCCGCGCGCCCGCGCCCGCGCCCGCGGCACATGA
CGCGGCCCCGCGATGGGCTGCATCCTCGGTAAGCTCGCCCCCGCGCCCGGGTCCTCCCTC
TTCTTCCCCGCCGCCGCGGGAGGAGGCGACGCCAACAAGGAGCCGCAGCTGCAGGCGCCG
CAACCGGAGCACATCGCTGCGGTGAAGAAGGACGCGTCCGGGTGGCCTCTCTGGCTCTCC
GAGGCCGCCGGCGACGCGCTCCGCGGCTGGGCGCCCCGCGGCGCCGACGCCTTCCAGAAG
CTCGAGAAGATTGGTTCGGGCACGTACAGCAACGTGTACAAGGCGATTGAGGTGGAGAGC
GGCCGCGTGGTGGCGCTGAAGAAGGTGCGGGTGGATGGCGTCGGCGAGGCCGAGAGCGCG
CGGTTCATGGCGCGGGAGATCGCCCTGCTCCGCCGCCTCGGCGACCACCCCAACGTCGTC
CGCCTCAACGGCCTCGTCACCTCCCGCCTCAACACGGCGCCGTCCCTCTACCTCGTCTTC
GAGTACATGGAGCACGACCTGACTGGCCTCACCGCCTGCGCAACTGCCTCCGGCCGCCGC
TTGTCCTTGCCTCAGGTGAAGTGCTACATGAAACAGCTACTCTCCGGGATCGAACACTGC
CACAACAACGGCGTTCTGCACCGTGACATCAAGACCTCCAACTTACTCGTCAGCAGCGAC
GGAGTTCTCAAAATAGCCGACTTTGGACTCGCCACCTCTTACGATCCTGAGAACGTGCGG
CCCATGACTAGCCAAGTGATCACTCTTTGGTATCGTCCACCTGAACTCTTGCTAGGGGCG
ACTCACTACGGCGTCGGTGTGGACCTCTGGAGCGTGGGTTGCATACTGGCAGAACTGCTT
CTCGGCGAGCCGATGTTCCCCGGAAGAACAGAGGTGGAACAGCTGCACAAGGTTTTCAAG
CTATGTGGTACTCCATCGGAGGATTACTGGGAGAAGATGAAGCTTGCTCATCCTTTATTC
AAGCCATATGAACGGTGCCTAGCTGAAAAGTTTAAAGACGTGCCACCGTCTACCCTATCG
CTTCTCGAGACTCTCCTGTCGATTGACCCAGATATGAGAGGCACGGCAACCGATGCTCTG
AACAGCGAGTTCTTCAGGACGGAACCATACGCCTGTGAACCATCCAGCCTCCCACGCTAC
CCACCATGCAAAGAAAGAGACGTGAAGCTGAAGTATGAGAAGCATAAAAGGAAGTCCAGG
GTTAATGGGTCAGTAGAGCGTCACAGGAACCGACAGCACGCGTCGCAAAATCCTGGGCGT
AGAGTTTTTACTCCAGACGCCAGTAATAAGCCGCAAGCAAATCTAAAGGTACCAAGGTTG
GTGACAAGCACAAGCACAACCAAACTTGAGAGATTTCCGCCGCCTCATCTGGACGCGTCG
ATTGGTTATAGTCTAGATTCATCAGTGGATGGAGCCACAGAAGAGTTCTTCTCGTCGTCG
GTCGTTGAGCTAAAGAAAATGCCAAGCCTCATATTTGGTCACGTGAAATCTTACCTGAAT
AGCCCAAAGAAGGGCATGCACAGCAAGGCAAGGCCAAGCCTCAACATGGCGCCTCCCACC
GTTCTCATTGGCGCATTCCGGCCTTACTCCTTTGGGCAGCCAATGGAGGTGAGAAGAAAG
AATAGAGAGCAATTCAGAAGCAAAGGAAGAAATGCAGTAGGTGCAGTCAAGTGACAACCT
AATCATGTATTCATGTTACCCCCCTTTTTTTTGCCCTTCACTTTTTTATTATAGATGCCA
GATAGATAATAGCCGGTGAATTTCAACCACAGTTGATAGGTTTTACCTTGTATAGTTAGA
GAGTACTATACATTAGAGTTGCGTATACTGCATTTATTCTGTATAATGGATCACAGAGTT
TCATCTTTAACACAAAGGAAGGTCTGAGAACTCCCTGACAAATTTGTATCTTCAACCTCT
GCATCAGAGGAAGATCAGAGAGAAAAGAAAAGGAAGGGGTTAAGGGGATTGC