Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042269_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:158421207:158424170:1 gene:Zm00001d042269 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNAJ heat shock N-terminal domain-containing protein
Sequence

ATGGAGGATGGGGAGACGGAGGAGGCGCAGCGGGACGCGATCACGGCGAGGATGCGGGCC
CAGGACTACGCGGGCGCGAGGGCGCTGCTGCTGCGGACGCTTCAGACGAACCCCAGGCTG
GAGGGTGCCCTGGAGATGCTCCCGGTGCTCGAGGTCCTCTGCTGCGCCGCCGCCGGCCGT
GGGGGCGTGGACTGGTACAGAGTCCTCCAGGTGCTGCCTGTGGATGACGCCGCCAGGATC
GAGGCGCGCTACAAGAGCATCGTGGCCCAGGTGGAGCCGGCCATGGGGGCTCTGCCCGGC
GCCGAATTGGCCCTCAAGCTCGTCGACGAGGCTTACGCGGTGCTGTCTGATCCAGAGAAG
CGAGAGGGGTTTGATTCGAGCAACGTTTTCACCCGGTTCGTTCGGTCCGGTGTCGTTGAT
GCTCCACCGCCCGGTGGCACACTCGTCCGTCCTGACAGGGTGAGCAGCCTTCACACAAAC
AAGATTATGGCGTTAAATGGTACGAGCAATGCAGTCTCGCGTACCAACCACGCCGACAGG
CCATGCTTTGATGGAAGGGATTCCCGTCTTTCAAATGTGGCGAGTTCATCCGGGACTAAG
AGGATGGATCCTTGCTTTCTTGCTGATGACGGTGAGTTGCAGTCACCTGATGGCACTCAT
GTTAACAAGGGGCAAAAGAGTGTCAGTGAAAAGGATGTTTATTGCATGTCTCCCTCACAG
GAAAACTGGGATACCTGCTTTGATGATCCATCACATGCTAAGGAAGAAGATTTGGATGCC
TGCTTTGATGATCCATCTGGTACCAAAGAAGGTGAGCTATGCAGTAGCAAGTCGTATGAA
TACCATAATTTTGAAGAAGATCGAGCGATCGAGAATTTTGCTCCTGGCCAGGTTTGGGCA
GCATATGACTGGGGGAGGTTTCCTCGTAGATATGCACTGATTGTTAAAGTACTGACGGAT
AAAATGCAGTTGTATGTCTCATGGTTCATGCCCTGTCCGCAAACTCCTGAAGAGAAGAAA
TGGTCCCTTGTGGGGTTGCCATTGGTTTGTGGAACTTTCGTTGCAGATGAACACCGAATC
TCGTTAACATGTCCAACTATGTTCTGTCACCAAATTTCCAACAACAACATGAATCAAGAT
CTTGAAGTGTATCCACAGGAAGGTGAAATATGGGCCATTTATAGAAATTGGGATATCGGA
TGGTACACTGATCCTAGGATGTGGAAGAATAGTGACTTCTCTATTGTTGAAATTCTTACT
AGCTATTCTAATGAATCAGGTTACACTGTTGCACATTTGACAAAGGTGGATGGTTATGGA
AGTGTTTTCCAGAGGCATTTTAAGAGTGGAACAGAACATTTGTTACACATACATGGTCAA
AATCTTATCATGTTTTCTCACAGGATCCCTTCTTTCAAATTTACTCATGATGCTGGAACT
ATGTTCGAGCTTGATCATTCTGCAGTTCCAGAAAAAATGCACCAAAAAAATACATCTGCG
TGTATTTCTCATTTGTCTGAGCTTTCAGGTTTACCTGATGACACAGATGGCTTCCCTGAA
ACTGCTGTTGCACAATTCTCAAATCCTTCAGCAACAAGCAAAATGGAAGCAGGTTCCCCG
ACGCAAGCCATGATGAGCTACAATACCAAGTGGTTTCCCAAGGATTTTCTAGAGGGCCAA
ATATGGGCTGTATTTGATTCTCGGGACCGGATGCCTAGGTCTTATGTCAGGATAATCCAT
GTGGTTTCATCTACTTCAGTTTTTGTATTGAAGTTGGAACCTCACCCTATGCTTAATGAA
GAGATACAGTGGGTTGAAGATGGTCTACCGGTTGCTTCTGGAGTATTTCGCGCTGGTACT
GAAACTACTTACAAGGATATCTGGGAATTCTCACACCCTGTAGAGTGTGACTGGAGTGCA
AAAAGATCTTTTTACCGTATATTCCCCCAAAAGGGGGAAATATGGGCAATGCTAAAAAAT
TGGAGGATCACCTTGAATACCACTGACATTGACAAATGTGAACCTCGCATGGTTGAGATC
CTCTCGGAATACTCTGATGAAAATGGAGTAAATGTTTGCAGCTTGGCTCGGGTAAAAGGT
TGCTTTACCTTTTTTCATAGGGTAGCAGTGGAGGATTTCTGTTTGACAAGGTGGATTCCA
AGGTCTGAAATGCTCAGCTTTTCCCACCGTGTTCCTGCTTTTGACATTGTTGACATCAAA
GATCATGATATACCACAAGGGTCATGGTATCTGGAACCAAGTGCCCTTCCTACAAGGATC
ATACATTAA

Peptide Sequence

PEP ID

Zm00001d042269_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:158421207:158424170:1 gene:Zm00001d042269 transcript:Zm00001d042269_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNAJ heat shock N-terminal domain-containing protein
Sequence

MEDGETEEAQRDAITARMRAQDYAGARALLLRTLQTNPRLEGALEMLPVLEVLCCAAAGR
GGVDWYRVLQVLPVDDAARIEARYKSIVAQVEPAMGALPGAELALKLVDEAYAVLSDPEK
REGFDSSNVFTRFVRSGVVDAPPPGGTLVRPDRVSSLHTNKIMALNGTSNAVSRTNHADR
PCFDGRDSRLSNVASSSGTKRMDPCFLADDGELQSPDGTHVNKGQKSVSEKDVYCMSPSQ
ENWDTCFDDPSHAKEEDLDACFDDPSGTKEGELCSSKSYEYHNFEEDRAIENFAPGQVWA
AYDWGRFPRRYALIVKVLTDKMQLYVSWFMPCPQTPEEKKWSLVGLPLVCGTFVADEHRI
SLTCPTMFCHQISNNNMNQDLEVYPQEGEIWAIYRNWDIGWYTDPRMWKNSDFSIVEILT
SYSNESGYTVAHLTKVDGYGSVFQRHFKSGTEHLLHIHGQNLIMFSHRIPSFKFTHDAGT
MFELDHSAVPEKMHQKNTSACISHLSELSGLPDDTDGFPETAVAQFSNPSATSKMEAGSP
TQAMMSYNTKWFPKDFLEGQIWAVFDSRDRMPRSYVRIIHVVSSTSVFVLKLEPHPMLNE
EIQWVEDGLPVASGVFRAGTETTYKDIWEFSHPVECDWSAKRSFYRIFPQKGEIWAMLKN
WRITLNTTDIDKCEPRMVEILSEYSDENGVNVCSLARVKGCFTFFHRVAVEDFCLTRWIP
RSEMLSFSHRVPAFDIVDIKDHDIPQGSWYLEPSALPTRIIH

Transcript Sequence

Transcript ID

Zm00001d042269_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:158421207:158424170:1 gene:Zm00001d042269 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNAJ heat shock N-terminal domain-containing protein
Sequence

GAGCACGAGTGCATAATTGGCTATGATACAGTCTGGAAAGGAAAAGAAAAGGCTTTGGCT
GAATTGTATGATTCATGCCAAGAGAGTTTTCAGCTGTTGTACAATTGGAGGTCAGGGGTC
ACGAAGGTTTTCGGTAGACCATGGCTTGGCAGACAGCAGACTACTACTAGCAACAAAATC
AGTCATTAAATCGATCCGATCGGTTCACATCCCGCGAGATAATCCATGGCTGGGTGCTAG
GGTTTACGGCTTCCTCCATTCGCACGCACCCCTGGGCGCTGCGGGCTCGCGGAGCAGGAT
CGATCAGTTCGATGGAGGATGGGGAGACGGAGGAGGCGCAGCGGGACGCGATCACGGCGA
GGATGCGGGCCCAGGACTACGCGGGCGCGAGGGCGCTGCTGCTGCGGACGCTTCAGACGA
ACCCCAGGCTGGAGGGTGCCCTGGAGATGCTCCCGGTGCTCGAGGTCCTCTGCTGCGCCG
CCGCCGGCCGTGGGGGCGTGGACTGGTACAGAGTCCTCCAGGTGCTGCCTGTGGATGACG
CCGCCAGGATCGAGGCGCGCTACAAGAGCATCGTGGCCCAGGTGGAGCCGGCCATGGGGG
CTCTGCCCGGCGCCGAATTGGCCCTCAAGCTCGTCGACGAGGCTTACGCGGTGCTGTCTG
ATCCAGAGAAGCGAGAGGGGTTTGATTCGAGCAACGTTTTCACCCGGTTCGTTCGGTCCG
GTGTCGTTGATGCTCCACCGCCCGGTGGCACACTCGTCCGTCCTGACAGGGTGAGCAGCC
TTCACACAAACAAGATTATGGCGTTAAATGGTACGAGCAATGCAGTCTCGCGTACCAACC
ACGCCGACAGGCCATGCTTTGATGGAAGGGATTCCCGTCTTTCAAATGTGGCGAGTTCAT
CCGGGACTAAGAGGATGGATCCTTGCTTTCTTGCTGATGACGGTGAGTTGCAGTCACCTG
ATGGCACTCATGTTAACAAGGGGCAAAAGAGTGTCAGTGAAAAGGATGTTTATTGCATGT
CTCCCTCACAGGAAAACTGGGATACCTGCTTTGATGATCCATCACATGCTAAGGAAGAAG
ATTTGGATGCCTGCTTTGATGATCCATCTGGTACCAAAGAAGGTGAGCTATGCAGTAGCA
AGTCGTATGAATACCATAATTTTGAAGAAGATCGAGCGATCGAGAATTTTGCTCCTGGCC
AGGTTTGGGCAGCATATGACTGGGGGAGGTTTCCTCGTAGATATGCACTGATTGTTAAAG
TACTGACGGATAAAATGCAGTTGTATGTCTCATGGTTCATGCCCTGTCCGCAAACTCCTG
AAGAGAAGAAATGGTCCCTTGTGGGGTTGCCATTGGTTTGTGGAACTTTCGTTGCAGATG
AACACCGAATCTCGTTAACATGTCCAACTATGTTCTGTCACCAAATTTCCAACAACAACA
TGAATCAAGATCTTGAAGTGTATCCACAGGAAGGTGAAATATGGGCCATTTATAGAAATT
GGGATATCGGATGGTACACTGATCCTAGGATGTGGAAGAATAGTGACTTCTCTATTGTTG
AAATTCTTACTAGCTATTCTAATGAATCAGGTTACACTGTTGCACATTTGACAAAGGTGG
ATGGTTATGGAAGTGTTTTCCAGAGGCATTTTAAGAGTGGAACAGAACATTTGTTACACA
TACATGGTCAAAATCTTATCATGTTTTCTCACAGGATCCCTTCTTTCAAATTTACTCATG
ATGCTGGAACTATGTTCGAGCTTGATCATTCTGCAGTTCCAGAAAAAATGCACCAAAAAA
ATACATCTGCGTGTATTTCTCATTTGTCTGAGCTTTCAGGTTTACCTGATGACACAGATG
GCTTCCCTGAAACTGCTGTTGCACAATTCTCAAATCCTTCAGCAACAAGCAAAATGGAAG
CAGGTTCCCCGACGCAAGCCATGATGAGCTACAATACCAAGTGGTTTCCCAAGGATTTTC
TAGAGGGCCAAATATGGGCTGTATTTGATTCTCGGGACCGGATGCCTAGGTCTTATGTCA
GGATAATCCATGTGGTTTCATCTACTTCAGTTTTTGTATTGAAGTTGGAACCTCACCCTA
TGCTTAATGAAGAGATACAGTGGGTTGAAGATGGTCTACCGGTTGCTTCTGGAGTATTTC
GCGCTGGTACTGAAACTACTTACAAGGATATCTGGGAATTCTCACACCCTGTAGAGTGTG
ACTGGAGTGCAAAAAGATCTTTTTACCGTATATTCCCCCAAAAGGGGGAAATATGGGCAA
TGCTAAAAAATTGGAGGATCACCTTGAATACCACTGACATTGACAAATGTGAACCTCGCA
TGGTTGAGATCCTCTCGGAATACTCTGATGAAAATGGAGTAAATGTTTGCAGCTTGGCTC
GGGTAAAAGGTTGCTTTACCTTTTTTCATAGGGTAGCAGTGGAGGATTTCTGTTTGACAA
GGTGGATTCCAAGGTCTGAAATGCTCAGCTTTTCCCACCGTGTTCCTGCTTTTGACATTG
TTGACATCAAAGATCATGATATACCACAAGGGTCATGGTATCTGGAACCAAGTGCCCTTC
CTACAAGGATCATACATTAACACATGTATAGTAGCAGAAGTAGCCATAGCCCTATTGTAA
TGAACTAATGACTCCACCCTTCTCTATCCCTCCATTTTGAATTGTTCTACTTATCTCCAT
TAATCATCTTGTACTTACTGACTCATTTGTGAAGAGAACTGTTTGATCAACTCTTCAAAA
TTCCCATGTATGACCAATTGCAGATCAGGTCTGACAAGTGTTAAAATTT