Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042262_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:157883653:157895430:1 gene:Zm00001d042262 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence

ATGGACCGTCTCCGGGCGGGAAGCCCCGTCTACGGGCGGCAGCGGAGCGGCAGCAGCACG
GGCTCCTCCTCCCCCGGCGGCGTCTCCCCCTCGCACCACCGCTCCTCCTCCACCTCCTCC
GCTGCCTCCGCCGCGGGCGCGCCCGGCACCTCCAACATCCGCCGCACGCAGAACGTCGCC
GCGCGCGCCGCGGCCGCGAGGCTCGCGCAGGTCATGGCCTCGCAGAACGCCGCCGCGGCC
GCCGGCGACGATGACGACGACGATGACTACCCGCCCCCGGCTCCTGGGAGGTTCGGAAGT
GGAAGAGTGGCGCACGGCAGCAACGGCGTGTCCCTGCTTGGACGCTCCGCGAGATCTCCC
TCTCCTGCGTTAGGTCGGAATATTGTAGAGCCACCTCCTACGGCCCGCTCATCATCGGCA
GGCAGGCCAGCTGTTGCATCACGACCCACCACCACAGTGGTGCCGCCAATCAAAACCAAC
ACGACGCTGCGAACACCGTCCCCTATTCCACCGGTGGCTGTGGAGCCTCCAGCGGATCGC
ACTCGACCGAAAAGATTTGATGCAGCGCTTCATAGCTCAAGAGAATCAGGACTGAAAAGA
GAGGCATCTACACTTCACGATGAGCTTGATATGCTACAAGAGGAGAATGAAAGTGTTCTA
GAAAAGTTGCGACTTGCTGAAGAAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTT
GAGAAACAGGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGG
AAGGAAGCAGCACTTAAACAGAGGGAGGCTGCGCTAAAAGCTGCAAGAGAATCAAAGGAT
GGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAGTCTGCCAAAGAAGAGGTT
GCATCAGCAATGGACCAGCTAAAGGAGGCAGAGTCTGAAACGAAGGCTCTCCGATCTATG
ACTCAGAGAACGGTCTTAACTCAAGAAGAAATGGAGGAGGTTGTCCTAAAAAGATGCTGG
CTTGCACGCTATTGGGGCTTAGCAGTTCAATATGGTGTGTATCCCGAAATTGCGGTATCA
AAGCATGAACATTGGTCATCATTGGCTCCTCTTCCTCTTGAGGTTGTTCTTTCCGCCGGT
CAAAAAGCTAAGGAGGAACCTCGAAAACAAGGTGACAATGTTCAAGGGAGAAATAAACTT
GCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAA
ATGGGCCTTAGAGAGCTTTCTTCATTGAAGGTGGAAGATGCTGTTGTAGTTGCAGTTGGC
CAACATCGCAGACCTAGCATAGTTCGTCAGTTCACATCAGATTTCAAATCACCTGGTGAA
CCTAAATACTTGGAGGCATTTGATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAG
CAGGCATGGCTTATATACTTCTGGAGAAGAGCCAAAACTCATGGTGTTGAGGAAGATATT
GCTGATGACCGGCTTCAGCTTTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGAC
GCTATCGATGTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTG
TGGGAGGGCTCGCGAGCAGATATAGATCAAGCTTCTTTGGCGATGGAGAATCAGTAA

Peptide Sequence

PEP ID

Zm00001d042262_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:157883653:157895430:1 gene:Zm00001d042262 transcript:Zm00001d042262_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence

MDRLRAGSPVYGRQRSGSSTGSSSPGGVSPSHHRSSSTSSAASAAGAPGTSNIRRTQNVA
ARAAAARLAQVMASQNAAAAAGDDDDDDDYPPPAPGRFGSGRVAHGSNGVSLLGRSARSP
SPALGRNIVEPPPTARSSSAGRPAVASRPTTTVVPPIKTNTTLRTPSPIPPVAVEPPADR
TRPKRFDAALHSSRESGLKREASTLHDELDMLQEENESVLEKLRLAEERCEEAEARAKEL
EKQVAALGEGVSLEARLLSRKEAALKQREAALKAARESKDGRDGEVTTLRQELESAKEEV
ASAMDQLKEAESETKALRSMTQRTVLTQEEMEEVVLKRCWLARYWGLAVQYGVYPEIAVS
KHEHWSSLAPLPLEVVLSAGQKAKEEPRKQGDNVQGRNKLAREMSDVMGEGNIESMLSVE
MGLRELSSLKVEDAVVVAVGQHRRPSIVRQFTSDFKSPGEPKYLEAFDLSPEEAEDVSFK
QAWLIYFWRRAKTHGVEEDIADDRLQLWIGRNAQAPNSHDAIDVERGLTELRKLGIEQQL
WEGSRADIDQASLAMENQ

Transcript Sequence

Transcript ID

Zm00001d042262_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:157883653:157895430:1 gene:Zm00001d042262 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence

CTCCCCCACTTCCTTCCCACTCTCCCTCGCCCCGGCATCGCCATCTCCGCGCCGCAGCCG
CCCGCCCGCCGGCCCAGATCCCACCGGCGAGCCGCAGCATGGACCGTCTCCGGGCGGGAA
GCCCCGTCTACGGGCGGCAGCGGAGCGGCAGCAGCACGGGCTCCTCCTCCCCCGGCGGCG
TCTCCCCCTCGCACCACCGCTCCTCCTCCACCTCCTCCGCTGCCTCCGCCGCGGGCGCGC
CCGGCACCTCCAACATCCGCCGCACGCAGAACGTCGCCGCGCGCGCCGCGGCCGCGAGGC
TCGCGCAGGTCATGGCCTCGCAGAACGCCGCCGCGGCCGCCGGCGACGATGACGACGACG
ATGACTACCCGCCCCCGGCTCCTGGGAGGTTCGGAAGTGGAAGAGTGGCGCACGGCAGCA
ACGGCGTGTCCCTGCTTGGACGCTCCGCGAGATCTCCCTCTCCTGCGTTAGGTCGGAATA
TTGTAGAGCCACCTCCTACGGCCCGCTCATCATCGGCAGGCAGGCCAGCTGTTGCATCAC
GACCCACCACCACAGTGGTGCCGCCAATCAAAACCAACACGACGCTGCGAACACCGTCCC
CTATTCCACCGGTGGCTGTGGAGCCTCCAGCGGATCGCACTCGACCGAAAAGATTTGATG
CAGCGCTTCATAGCTCAAGAGAATCAGGACTGAAAAGAGAGGCATCTACACTTCACGATG
AGCTTGATATGCTACAAGAGGAGAATGAAAGTGTTCTAGAAAAGTTGCGACTTGCTGAAG
AAAGATGTGAGGAAGCTGAAGCTAGAGCCAAGGAGCTTGAGAAACAGGTAGCTGCTCTTG
GAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGGAAGGAAGCAGCACTTAAACAGA
GGGAGGCTGCGCTAAAAGCTGCAAGAGAATCAAAGGATGGCAGAGATGGGGAAGTAACAA
CACTAAGGCAAGAACTTGAGTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAA
AGGAGGCAGAGTCTGAAACGAAGGCTCTCCGATCTATGACTCAGAGAACGGTCTTAACTC
AAGAAGAAATGGAGGAGGTTGTCCTAAAAAGATGCTGGCTTGCACGCTATTGGGGCTTAG
CAGTTCAATATGGTGTGTATCCCGAAATTGCGGTATCAAAGCATGAACATTGGTCATCAT
TGGCTCCTCTTCCTCTTGAGGTTGTTCTTTCCGCCGGTCAAAAAGCTAAGGAGGAACCTC
GAAAACAAGGTGACAATGTTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAA
TGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAGAGAGCTTTCTT
CATTGAAGGTGGAAGATGCTGTTGTAGTTGCAGTTGGCCAACATCGCAGACCTAGCATAG
TTCGTCAGTTCACATCAGATTTCAAATCACCTGGTGAACCTAAATACTTGGAGGCATTTG
ATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAGGCATGGCTTATATACTTCT
GGAGAAGAGCCAAAACTCATGGTGTTGAGGAAGATATTGCTGATGACCGGCTTCAGCTTT
GGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGTGGAGAGAGGTC
TAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGTGGGAGGGCTCGCGAGCAGATA
TAGATCAAGCTTCTTTGGCGATGGAGAATCAGTAAGAATTTTCCACGGCTGTCTATGCTT
CGTGTATCATCCCAGTTTTGGAGAAACGGGAACTCCATTTCCCAGCAGGTCTCGGCCCTT
TGCATCATCAGGTATCACAGTCACAGGATTGTGCTCCGATCTTGGGGTGTGACCGATGGA
CTTCCGATGAGTTTGTGTAGTGCATGTGCAAGCCATTCATCTGTTGTTATTAAAATAGCT
TTGTGAAATGTGTAATAGCTCTGCTTTGGCAAGAGAAACGATGGCAACGACGACCCCACT
TCCAGCAATTGTGAATTTTGTGATTATCCCACCTTGTTTGTTCTCTGCTGTCGAGCCCAA
CCTCTCCGCACCAGGGAACGTGTGTGTTCCTGCAACGGATGAACGAAATGGTTTTTGTGT
ATCTCTGGGTAGTATGAGTTCTGTGCAAATGGTTCTGGAGTTTTCTATAAGATCTTAAAA
ACC