Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d042164_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:3:154319329:154325586:1 gene:Zm00001d042164 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase 2 plasma membrane-type
Sequence	ATGTTTCTTTGTGATTCACAGGAAAAGCTTCGTGTTGCACTCTACGTGCAGAAGGCTGCG CTGCAGTTCATCGATGCCGCCCGCAAGACGGAGCACCCGTTACCGGAGATGGCGCGGGAA TGCGGCTTCTCCGTGAGCGCGGAGGAGCTGGCCACCGTGGTGCGCAACCACGATGCCAAG GCCCTGAGGCACCACATGGGCGTCGACGGCGTCGCGCGGAAGGTGAACGTGTCCCTCGCC GACGGCGTCAAGTCCGACGAGGTGGGCGTCCGGGCCGAGGTCTACGGCGCCAACCAGTAC ACCGAGAAGCCGCCGAGGACGTTCTGGATGTTCCTGTGGGACGCCTGCCAGGACATGACG CTCCTGCTGCTCGCCTTCTGCGCGTTCGTCTCCGTCGCCATCGGGCTCGCCACCGAGGGG TGGCCCAGCGGGATGTACGACGGCCTCGGCATCGTGCTCACCATCCTCCTCGTGGTCATG ATCACCGCGGCCAGCGACTACAACCAGTCGCTGCAGTTCCGGGACCTGGACAGGGAGAAG AAGAAGATCGACATGCAGGTCACCCGCGACGGCTACCGCCAGAAAGTGTCCATATATGAC ATTGTCGTCGGGGATATCGTCCACCTGTCCATCGGCGACCAGGTGCCAGCGGACGGCCTG TACATCGACGGCTACTCGTTAGTGGTCGACGAGTCGAGCCTCTCCGGCGAGAGTGAGCCA GTGCATATGTCCAGTGCAAAACCTTTCCTGCTCGGCGGTACCAAGGTGCATGACGGGTCG GCCAGGATGCTGGTCACCGCGGTCGGGATGCGAACTGAGTGGGGAAACCTCATGGAAACG CTGAGCCAAGGCGGTGAGGACGAGACGCCGCTGCAGGTCAAGCTCAACGGCGTGGCCACC ATCATCGGCAAGATCGGTCTGGTATTCGCGGTGCTCACGTTCACCGTTCTCATGGCACGG TTTCTCGTGGGCAAGGCGCACGCGCCCGGCGGGCTCTTGCGGTGGAGGGGAGCAGATGCG CTCTCCATACTCAACTTCTTCGCCGTCGCGGTCACCATCATCGTAGTCGCCGTGCCCGAG GGGCTGCCGCTCGCCGTCACGCTCAGCCTGGCGTTCGCCATGAAGAAGCTCATGGAGGAG CGCGCGCTCGTGCGGCACCTCTCGGCGTGCGAGACCATGGGGTCGGCGAGCTGCATCTGC ACGGACAAGACCGGCACGCTCACCACGAACCACATGGTCGTCGAGAAGGTCTGGGCGTCC GGGGCGGCGCAGACGGTGAGCACCGCCAAGGGCTTCGACGAGCTCAGGTCGTCGGTGTCG GAGAACTTCACGAGGGTGCTCCTGGAGGGAGTCTTCCACTGCTCCGGCTCGGAGGTCGTC ACGAGCAAGGACGGAAGGACTAGCGTCATGGGCACGCCCACCGAGACGGCCATCCTGGAG TTCGGCCTCGAGGTGGAGAAGTACACCAAGGTGGAGCACGCGGACGCCAAGAAGCTCAAG GTGGAGCCGTTCAACTCGGTGAAGAAGACCATGGCCGTGGTTATCGCGTCCCCGAACGCG GCCGGCCACCCGCGCGCGTTCCTCAAGGGCGCGTCCGAGGTCGTCCTGAGCCGGTGCGGC TCCGTCTTGGACGGCACCGGGGCCGCGGAGAAGCTCACGGAGGCGAAGGCGAAGCGCGTG GCCAGCGCCATCGACGCGTTCGCGTGCGAAGCGCTGCGCACGCTCTGCCTGGCGTACCAG GACGTCGGCGGCGCCAGCGACGTCCCCGGCGACGGTTACACGCTCATCGCGGTGTTCGGC ATCAAGGACCCGCTCCGCCCGGGCGTGAGGGAGGCCGTGAGGACGTGCCACGACGCGGGC ATCAATGTCCGCATGGTCACCGGCGACAACATCAACACGGCGAAGGCAATTGCGAGGGAG TGCGGCATCCTCACCGACGACGGCGTCGCCATCGAGGGACCCGAGTTCCGTGCCAAGAGC CCCAACGAGATGAGAGAGCTCATACCCAAAATCCAGGTGATGGCTCGGTCGTTGCCACTG GACAAGCACACGCTGGTGACGAACCTGAGGGGCATGTTCAACGAGGTGGTGGCGGTGACC GGCGACGGCACCAACGACGCGCCGGCGCTGCACGAGGCCGACATCGGCCTCGCCATGGGC ATTGCAGGAACAGAGGTCGCCAAGGAGAACGCGGACGTGATCATCATGGACGACAACTTC TCGACCATCATCAACGTCGCCAAATGGGGCCGGTCGGTCTACATCAACATCCAGAAGTTC GTGCAGTTCCAGCTCACGGTGAACGTCGTCGCCCTCATGGTGAACTTCGTCTCCGCGTCT TTCACAGGGAGCGCCCCTCTGACCATCGTGCAACTGCTGTGGGTGAACCTGATCATGGAC ACCCTGGGCGCCCTGGCGCTGGCGACGGAGCCCCCCAACGACGCGATGATGCGGAGGCCG CCGGTCGGCCGGGGCGACAACTTCATCACCAAGGTGATGTGGCGGAACATCATCGGGCAG AGCATGTACCAGCTCCTCATGCTCGGCGTCCTCATCTTCAAGGGCAAGAGCCTCCTCCGG CTGGGCAGCGGCGGCGATGTATCCGACGCCCAGCTCAACACGTTCATATTCAACACCTTC GTCTTCTGCCAGGTCTTCAACGAGGTTAACAGCCGGGACATGGAGAAGGTCAACGTGTTC AGCGGCATCTTTAGCAGCTGGATCTTCCCGGCGGTCGCCGGCGCCACCGCCGCGTTCCAG GTGATCATCGTGGAGTTCCTGGGGACTTTCGCGAGCACGGTGCACCTGAGCGGGAGACTC TGGCTCGCTAGCATGATGATCGGCTCGGGAAGCCTGCTGATGGGCGCCGGCCTCAAGTTC ATCCCTGTCGATCCGGGCAGTGAAGGCTCGTCTGACCGCCACGATGGGTACCAGCCCATC CCCACCGGCCCCAACGCCGTGTGA

Peptide Sequence

PEP ID	Zm00001d042164_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:3:154319329:154325586:1 gene:Zm00001d042164 transcript:Zm00001d042164_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase 2 plasma membrane-type
Sequence	MFLCDSQEKLRVALYVQKAALQFIDAARKTEHPLPEMARECGFSVSAEELATVVRNHDAK ALRHHMGVDGVARKVNVSLADGVKSDEVGVRAEVYGANQYTEKPPRTFWMFLWDACQDMT LLLLAFCAFVSVAIGLATEGWPSGMYDGLGIVLTILLVVMITAASDYNQSLQFRDLDREK KKIDMQVTRDGYRQKVSIYDIVVGDIVHLSIGDQVPADGLYIDGYSLVVDESSLSGESEP VHMSSAKPFLLGGTKVHDGSARMLVTAVGMRTEWGNLMETLSQGGEDETPLQVKLNGVAT IIGKIGLVFAVLTFTVLMARFLVGKAHAPGGLLRWRGADALSILNFFAVAVTIIVVAVPE GLPLAVTLSLAFAMKKLMEERALVRHLSACETMGSASCICTDKTGTLTTNHMVVEKVWAS GAAQTVSTAKGFDELRSSVSENFTRVLLEGVFHCSGSEVVTSKDGRTSVMGTPTETAILE FGLEVEKYTKVEHADAKKLKVEPFNSVKKTMAVVIASPNAAGHPRAFLKGASEVVLSRCG SVLDGTGAAEKLTEAKAKRVASAIDAFACEALRTLCLAYQDVGGASDVPGDGYTLIAVFG IKDPLRPGVREAVRTCHDAGINVRMVTGDNINTAKAIARECGILTDDGVAIEGPEFRAKS PNEMRELIPKIQVMARSLPLDKHTLVTNLRGMFNEVVAVTGDGTNDAPALHEADIGLAMG IAGTEVAKENADVIIMDDNFSTIINVAKWGRSVYINIQKFVQFQLTVNVVALMVNFVSAS FTGSAPLTIVQLLWVNLIMDTLGALALATEPPNDAMMRRPPVGRGDNFITKVMWRNIIGQ SMYQLLMLGVLIFKGKSLLRLGSGGDVSDAQLNTFIFNTFVFCQVFNEVNSRDMEKVNVF SGIFSSWIFPAVAGATAAFQVIIVEFLGTFASTVHLSGRLWLASMMIGSGSLLMGAGLKF IPVDPGSEGSSDRHDGYQPIPTGPNAV

Transcript Sequence

Transcript ID	Zm00001d042164_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:154319329:154325586:1 gene:Zm00001d042164 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase 2 plasma membrane-type
Sequence	AATACACTAAGTTGCATGAATACGTTTCTTAGGTGTACCTTGTGCTCAGAGAAACACAAA ATAGTATCTAGTTTATACATGCCTTTATTAATCATGCATGTTTAAAGTACAGCGGAGAAT TACACTTCAAATACCAAATGTTAGCAAGCTAGCGTATATGTGTCATCCAGTATCTGGTTC CAATGAGCACCACCTAGTCTCTTGTTCCATTCCACCTCCCGACGGTCCTGTTACCTTGTG TTCACGCCCTTGTCATCCACCCCATCCTACATCATTGTCCTCTCTTGATTTGTCCTCCTA TGGCCACCTTAAAAATGTCTACCGGATGGAGGATGTGGAAGTAGGTCTAGAAATTAAGCT CGACATTCGTGAGTCTCGAGTGAGCCAAGTTGAGCTAGTTTTTTTGGCTCGTTGGTGCAA CAAGGTTTGTGACTTGTGTCAGTTGTGCCAAATTACTCAATCTATAGAATATTGATGGAT ATCATATGATTTTACACATAGTCGGATCGTTCTTTAGCCTTTGATGATAGATATATGACA ATTCATAATTTAGATTACTCATAATATTAAATAATGATTCTATATTCTATATTTATATAT TGTTAATTTACCATATAATGTAATAATATTTATCATGATACGACTCGTGACTTGAACCTA GCCTTATTCTTCAGCTTGGCAAGTTGCCGAGTCGAGTCAGCGAACAGAGTTCGACTCGGC TTGTTTCCAAACCTATGTGGGAGGAGCCATATGATGGTGCAAGCACGTGGTGCTTGAGTT CAATGCCGATGATGAGTGAGGAGATAAGATGTCACATGCTGCTTGTTGGGTGATTGGTTA GCCTAAAAAGCATATACGGTGAGGCCACAAATGGTCCTATGTATAACCATGGGTACTTAG AATAATATGGTGAGGTAAGGTGAAAAAATGATCCTATAAGTCCATTCTCAGTGATAGTTT TAATGTTGCCATGTTAATAAAAGTAAGATGAAATAAAGAATAAAATATATTCTCTCAATG AAGAATTTCATGACACAATTTCATAGGTTAACATGTGACTTAAATGTTGCATCTAAATAA CTAATAGAACATAGATGAAATAGATGGAGATGAAACAAATTGCCCTCAATAGTGGTTTCA CGTACTTTCCAATACATTAAAAACGGGTTGGTATAGTTTCATGGTGGTTTCACCTATTTT ATAAAAAAAATAGTGCCATGTCATCAAAAATCCTATGTGACATAGTAATTAACGCAATAA AATCTCATTGACAATCGCCTAAGATTAGTCGAGGCTTGTTTAAGTATTATTAGATAATTT AAGGACTAACATCATGTTTTATTCTTGATTGGGTTACATGGTCAACTCTTGATATGTTAG AGAGATATATAGAATTTTTAATATGCCTTCAAAACTATCACATGAGCTAGATAATTTGGA CGATTTTCTATAGTTCAAGAGGTAGAGTAACTAGCTTTATATTTTAGGGACCCAGAGTCG AGAAACATAAATAGACTTTTTCTACAGCAAATGCTACTTTCTTTGAAGTGCCCCATAATT TCCAGCAGTTATTTCACATGTTATCTTATCGGTTACGTTTGTGCGTAACCTACAAGACAG AGTTAAGCTAGCTTTAATTTTCAGGTCTTCAATTTATTCCTCAAAATAATTAATACGTAG GACCGTGTCTTGTTCTATCTGTATGTATGCGCTCCGTGGTCAGAATATTATACATGAGCA AGTTTATATGATTTTTCTGAAGTGAGAACATAATACATCAATTGATTGATTGATCTCAGA GTATCCTCCAGCAGGTCCTCTAAAGGATATGATCCTGTACTCTAAATTTTAGAGGACGCT CTCGTCGTCTACTCCCTCCAGCAGCATACTCTAAACCAGCAGCGTACTCTAAACGATCCT CTAAATTTAGAGGACGCTGCTGGATCTTGTATATATAGAGTTTTCTATATATTCTCTAAC AATTTGAATACTTTAAACTACCGGTTTAGTAAAACTAAAATATGTACAATACATTTGAGA GTATGACAAATGTATATATATAAAATTTAAAAAATAAAAAATATCTTTAATATAGTTATT TGTGTATAGAGGACGTGATTTAGATGATGTTGTTGAAGAAGAATGAGATATAGAGAATGA ATGAGACTGTAAAGAACATATATAGATGATAGATATAGAGCACATTGCTGGAGACAGTAT GAGCAGGCAAAAGGACGAAGCTTCATATAATGTTTATTTTCAGCTCAATTTATCATTCAA ACTTACATGAACTTGAAAAGGCAATACTTTTTTTCCCCGAGATTTAAAGGCAGTACTTGA ACGAATATGTTCGGTAACAGAAGAATTAAAGTTTTTTTATTATCAATATAATTACCTTTT CAATAATCAGTTAATATGTTGCCTTTCTTTCATACTCAGCCTAAAGCGCTGGAAAATGTT TCTTTGTGATTCACAGGAAAAGCTTCGTGTTGCACTCTACGTGCAGAAGGCTGCGCTGCA GTTCATCGATGCCGCCCGCAAGACGGAGCACCCGTTACCGGAGATGGCGCGGGAATGCGG CTTCTCCGTGAGCGCGGAGGAGCTGGCCACCGTGGTGCGCAACCACGATGCCAAGGCCCT GAGGCACCACATGGGCGTCGACGGCGTCGCGCGGAAGGTGAACGTGTCCCTCGCCGACGG CGTCAAGTCCGACGAGGTGGGCGTCCGGGCCGAGGTCTACGGCGCCAACCAGTACACCGA GAAGCCGCCGAGGACGTTCTGGATGTTCCTGTGGGACGCCTGCCAGGACATGACGCTCCT GCTGCTCGCCTTCTGCGCGTTCGTCTCCGTCGCCATCGGGCTCGCCACCGAGGGGTGGCC CAGCGGGATGTACGACGGCCTCGGCATCGTGCTCACCATCCTCCTCGTGGTCATGATCAC CGCGGCCAGCGACTACAACCAGTCGCTGCAGTTCCGGGACCTGGACAGGGAGAAGAAGAA GATCGACATGCAGGTCACCCGCGACGGCTACCGCCAGAAAGTGTCCATATATGACATTGT CGTCGGGGATATCGTCCACCTGTCCATCGGCGACCAGGTGCCAGCGGACGGCCTGTACAT CGACGGCTACTCGTTAGTGGTCGACGAGTCGAGCCTCTCCGGCGAGAGTGAGCCAGTGCA TATGTCCAGTGCAAAACCTTTCCTGCTCGGCGGTACCAAGGTGCATGACGGGTCGGCCAG GATGCTGGTCACCGCGGTCGGGATGCGAACTGAGTGGGGAAACCTCATGGAAACGCTGAG CCAAGGCGGTGAGGACGAGACGCCGCTGCAGGTCAAGCTCAACGGCGTGGCCACCATCAT CGGCAAGATCGGTCTGGTATTCGCGGTGCTCACGTTCACCGTTCTCATGGCACGGTTTCT CGTGGGCAAGGCGCACGCGCCCGGCGGGCTCTTGCGGTGGAGGGGAGCAGATGCGCTCTC CATACTCAACTTCTTCGCCGTCGCGGTCACCATCATCGTAGTCGCCGTGCCCGAGGGGCT GCCGCTCGCCGTCACGCTCAGCCTGGCGTTCGCCATGAAGAAGCTCATGGAGGAGCGCGC GCTCGTGCGGCACCTCTCGGCGTGCGAGACCATGGGGTCGGCGAGCTGCATCTGCACGGA CAAGACCGGCACGCTCACCACGAACCACATGGTCGTCGAGAAGGTCTGGGCGTCCGGGGC GGCGCAGACGGTGAGCACCGCCAAGGGCTTCGACGAGCTCAGGTCGTCGGTGTCGGAGAA CTTCACGAGGGTGCTCCTGGAGGGAGTCTTCCACTGCTCCGGCTCGGAGGTCGTCACGAG CAAGGACGGAAGGACTAGCGTCATGGGCACGCCCACCGAGACGGCCATCCTGGAGTTCGG CCTCGAGGTGGAGAAGTACACCAAGGTGGAGCACGCGGACGCCAAGAAGCTCAAGGTGGA GCCGTTCAACTCGGTGAAGAAGACCATGGCCGTGGTTATCGCGTCCCCGAACGCGGCCGG CCACCCGCGCGCGTTCCTCAAGGGCGCGTCCGAGGTCGTCCTGAGCCGGTGCGGCTCCGT CTTGGACGGCACCGGGGCCGCGGAGAAGCTCACGGAGGCGAAGGCGAAGCGCGTGGCCAG CGCCATCGACGCGTTCGCGTGCGAAGCGCTGCGCACGCTCTGCCTGGCGTACCAGGACGT CGGCGGCGCCAGCGACGTCCCCGGCGACGGTTACACGCTCATCGCGGTGTTCGGCATCAA GGACCCGCTCCGCCCGGGCGTGAGGGAGGCCGTGAGGACGTGCCACGACGCGGGCATCAA TGTCCGCATGGTCACCGGCGACAACATCAACACGGCGAAGGCAATTGCGAGGGAGTGCGG CATCCTCACCGACGACGGCGTCGCCATCGAGGGACCCGAGTTCCGTGCCAAGAGCCCCAA CGAGATGAGAGAGCTCATACCCAAAATCCAGGTGATGGCTCGGTCGTTGCCACTGGACAA GCACACGCTGGTGACGAACCTGAGGGGCATGTTCAACGAGGTGGTGGCGGTGACCGGCGA CGGCACCAACGACGCGCCGGCGCTGCACGAGGCCGACATCGGCCTCGCCATGGGCATTGC AGGAACAGAGGTCGCCAAGGAGAACGCGGACGTGATCATCATGGACGACAACTTCTCGAC CATCATCAACGTCGCCAAATGGGGCCGGTCGGTCTACATCAACATCCAGAAGTTCGTGCA GTTCCAGCTCACGGTGAACGTCGTCGCCCTCATGGTGAACTTCGTCTCCGCGTCTTTCAC AGGGAGCGCCCCTCTGACCATCGTGCAACTGCTGTGGGTGAACCTGATCATGGACACCCT GGGCGCCCTGGCGCTGGCGACGGAGCCCCCCAACGACGCGATGATGCGGAGGCCGCCGGT CGGCCGGGGCGACAACTTCATCACCAAGGTGATGTGGCGGAACATCATCGGGCAGAGCAT GTACCAGCTCCTCATGCTCGGCGTCCTCATCTTCAAGGGCAAGAGCCTCCTCCGGCTGGG CAGCGGCGGCGATGTATCCGACGCCCAGCTCAACACGTTCATATTCAACACCTTCGTCTT CTGCCAGGTCTTCAACGAGGTTAACAGCCGGGACATGGAGAAGGTCAACGTGTTCAGCGG CATCTTTAGCAGCTGGATCTTCCCGGCGGTCGCCGGCGCCACCGCCGCGTTCCAGGTGAT CATCGTGGAGTTCCTGGGGACTTTCGCGAGCACGGTGCACCTGAGCGGGAGACTCTGGCT CGCTAGCATGATGATCGGCTCGGGAAGCCTGCTGATGGGCGCCGGCCTCAAGTTCATCCC TGTCGATCCGGGCAGTGAAGGCTCGTCTGACCGCCACGATGGGTACCAGCCCATCCCCAC CGGCCCCAACGCCGTGTGATTTCCAAGAAGACCTCCTGCCATCCTTCTTGATTTTTATTT CCTTCTATAGAAACAATAGAACTGAACCCTCGGATGCGTTTGCAGTTTGGGGAAAAAAAA AGATGTTTTAGATAGGAGCGACGGTTGCATATGATGGCCGTCCTCAAGAATTTTAATCCT CGTCTCTTGGCTATTTTGTCTTTGTAGCCGGCAATGTTTTGTTTCTGAATTTGGATGATA GAATCGATGTTGCTTTAGCGAATAATGAGAATCTGTGTGAAGCTTTGCATAATGGTATAC TGCTACTTCATTGCAATGACTGCTATGCTTTTATAGCGTTATTGAAGTC