Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042084_T090
CDS Infomation

cds chromosome:B73_RefGen_v4:3:150162178:150170796:-1 gene:Zm00001d042084 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-2
Sequence

ATGTCAACTGCAAAAGTGTTAGATCCTGCTTTTCAAGGGGCTGGCCAGAAAGTTGGGACA
GAAATATGGCGGATTGAAGATTTTAAGCCAGTTGCACTGCCAAAATCTGATTATGGTAAA
TTCTACTGTGGAGATTCATACATAGTTCTGCAGACGACCTGTACTAAAGGTGGTGCCTAT
CTATACGATATCCACTTCTGGATTGGGAAAGATTCGAGTCAAGATGAAGCTGGGACTGCA
GCCATCAAGACAGTTGAACTTGATGCCATCCTTGGGGGTCGTGCAATTCAACATAGGGAA
CTCCAAGGTTACGAATCTGACAAATTCTTGTCATACTTCAAGCCTTGCATTATACCTTTG
GAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTG
TATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGGTTCCCTTCGCCCGGTCGTCA
TTAAACCATGATGATGTGTTTGTCTTAGATACTGAAAATAAGATATACCAGTTTAATGGT
GCTAACTCCAATATCCAAGAAAGGGCCAAAGCGTTGGAAGTAATACAACATTTAAAGGAG
AAATACCATGGGGGTGTTTGCGATGTTGCCATCGTTGATGATGGGAAACTACAAGCAGAG
TCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACT
GTGAGTGATGATGATGTTGTACTTGAAACTACAGCACCAAAACTGTACAGTATCAATGAT
GGCCAATTGAAGCTGGAAGAAACAGCTCTTACAAAAGCTGTGCTTGAAAATACCAAATGT
TTCTTACTTGACTGTGGGGCTGAAATATATGTATGGGTTGGACGGGTAACACAAATGGAG
GATAGAAAATCTGCCACTAAAGCAGTTGATGAATTCCTCATTAATCAAAAGCGTCCAAAG
ACAACGAGGGTAACTCAAGTGATTCAAGGTTATGAGAGTCATGCTTTCAAGTCCAAGTTT
GAATCGTGGCCAGTGGGTAATGCTGCTGGGAACCCTGGCACAGAGGAAGGGCGGGGAAAA
GTTGCCGCTTTATTGAAGCAACAACGCGTTGATCCCAAGGGAGCTGCAAAAAGCACCACT
CCAGTAAATGAGGAAGTTCCTCCTTTGCTTGATGGCGGTGGGAAGCTTGAGGTATGGTGC
GTTGATGGGAACACTAAGACTGCCCTGCCAAAAGAGGACATTGGAAAGTTTTACAGTGGA
GACTGTTATATCATTCTCTATACACATCATTCGGGCGACAAGAAAGAAGAGTACTATCTC
AGCTACTGGATTGGGAAGGATAGCTTGGTGGACGATCAAGTGTCGGCATCTCAAATAATC
AATACAATGTGGAATTCATTGAAAGGACGGCCAGTTCTGGGCCGTATATACCAAGGGAAG
GAGCCACCACAATTTGTTGCTCTTTTCCAGCCCATGGTTATCTTGAAGGGTGGAATCGGA
TCTGGATACAAGAAGCTCATAGAAGAAAAAGGTGCTATGGGTGAGACTTATACTACTGAA
GGCATAGCTCTAATTCGAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTA
GATGCGGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAATGCT
ATGTTTACATGGTTTGGCAATTCTAGCACATATGAGCAACAGCAGTGGGCAGCAAAAGTT
GCTGAATTTTTGAAGCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCT
GCTTTCTGGTTTGCTCTTGGAGGGAAACAGAGTTATACAAATAAAAACACTCCTCAGGAT
ATTATTACTAGAGAGCCTCACTTGTATGCATTCTCA

Peptide Sequence

PEP ID

Zm00001d042084_P090
PEP Infomation

pep chromosome:B73_RefGen_v4:3:150162178:150170796:-1 gene:Zm00001d042084 transcript:Zm00001d042084_T090 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-2
Sequence

MSTAKVLDPAFQGAGQKVGTEIWRIEDFKPVALPKSDYGKFYCGDSYIVLQTTCTKGGAY
LYDIHFWIGKDSSQDEAGTAAIKTVELDAILGGRAIQHRELQGYESDKFLSYFKPCIIPL
EGGFASGFKKPEEEKFETRLYICRGKRAIRVKEVPFARSSLNHDDVFVLDTENKIYQFNG
ANSNIQERAKALEVIQHLKEKYHGGVCDVAIVDDGKLQAESDSGEFWVLFGGFAPIGKKT
VSDDDVVLETTAPKLYSINDGQLKLEETALTKAVLENTKCFLLDCGAEIYVWVGRVTQME
DRKSATKAVDEFLINQKRPKTTRVTQVIQGYESHAFKSKFESWPVGNAAGNPGTEEGRGK
VAALLKQQRVDPKGAAKSTTPVNEEVPPLLDGGGKLEVWCVDGNTKTALPKEDIGKFYSG
DCYIILYTHHSGDKKEEYYLSYWIGKDSLVDDQVSASQIINTMWNSLKGRPVLGRIYQGK
EPPQFVALFQPMVILKGGIGSGYKKLIEEKGAMGETYTTEGIALIRVSETSIYNNKTLQV
DAVATSLSSTESFVLQSGNAMFTWFGNSSTYEQQQWAAKVAEFLKPGVAVKHCKEGTESS
AFWFALGGKQSYTNKNTPQDIITREPHLYAFS

Transcript Sequence

Transcript ID

Zm00001d042084_T090
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:150162178:150170796:-1 gene:Zm00001d042084 gene_biotype:protein_coding transcript_biotype:protein_coding description:Villin-2
Sequence

GGCGATTCGCATTCCGCTCGCCCCTCCCTGATACGGTGATACCGCGATCGGCGGGGCGCC
CGCGCCCGCCTCTTCTCTCTCTCGCGCGCGAGAGCAGCAGATCCGGCGATCCGCAGGCCC
TCCGCCGGCGCCCCGCCTGCCCGACGATCTAGATCCAGGTATTTGGGGAAGCATCTGCTA
TCATTTTGTTTTCCTCAAAGTAATCCAAGGAAAGTTGTTTCCAGATGTCAACTGCAAAAG
TGTTAGATCCTGCTTTTCAAGGGGCTGGCCAGAAAGTTGGGACAGAAATATGGCGGATTG
AAGATTTTAAGCCAGTTGCACTGCCAAAATCTGATTATGGTAAATTCTACTGTGGAGATT
CATACATAGTTCTGCAGACGACCTGTACTAAAGGTGGTGCCTATCTATACGATATCCACT
TCTGGATTGGGAAAGATTCGAGTCAAGATGAAGCTGGGACTGCAGCCATCAAGACAGTTG
AACTTGATGCCATCCTTGGGGGTCGTGCAATTCAACATAGGGAACTCCAAGGTTACGAAT
CTGACAAATTCTTGTCATACTTCAAGCCTTGCATTATACCTTTGGAGGGTGGTTTTGCCT
CTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGA
AGAGAGCTATTCGGGTTAAAGAGGTTCCCTTCGCCCGGTCGTCATTAAACCATGATGATG
TGTTTGTCTTAGATACTGAAAATAAGATATACCAGTTTAATGGTGCTAACTCCAATATCC
AAGAAAGGGCCAAAGCGTTGGAAGTAATACAACATTTAAAGGAGAAATACCATGGGGGTG
TTTGCGATGTTGCCATCGTTGATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAAT
TCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATG
TTGTACTTGAAACTACAGCACCAAAACTGTACAGTATCAATGATGGCCAATTGAAGCTGG
AAGAAACAGCTCTTACAAAAGCTGTGCTTGAAAATACCAAATGTTTCTTACTTGACTGTG
GGGCTGAAATATATGTATGGGTTGGACGGGTAACACAAATGGAGGATAGAAAATCTGCCA
CTAAAGCAGTTGATGAATTCCTCATTAATCAAAAGCGTCCAAAGACAACGAGGGTAACTC
AAGTGATTCAAGGTTATGAGAGTCATGCTTTCAAGTCCAAGTTTGAATCGTGGCCAGTGG
GTAATGCTGCTGGGAACCCTGGCACAGAGGAAGGGCGGGGAAAAGTTGCCGCTTTATTGA
AGCAACAACGCGTTGATCCCAAGGGAGCTGCAAAAAGCACCACTCCAGTAAATGAGGAAG
TTCCTCCTTTGCTTGATGGCGGTGGGAAGCTTGAGGTATGGTGCGTTGATGGGAACACTA
AGACTGCCCTGCCAAAAGAGGACATTGGAAAGTTTTACAGTGGAGACTGTTATATCATTC
TCTATACACATCATTCGGGCGACAAGAAAGAAGAGTACTATCTCAGCTACTGGATTGGGA
AGGATAGCTTGGTGGACGATCAAGTGTCGGCATCTCAAATAATCAATACAATGTGGAATT
CATTGAAAGGACGGCCAGTTCTGGGCCGTATATACCAAGGGAAGGAGCCACCACAATTTG
TTGCTCTTTTCCAGCCCATGGTTATCTTGAAGGGTGGAATCGGATCTGGATACAAGAAGC
TCATAGAAGAAAAAGGTGCTATGGGTGAGACTTATACTACTGAAGGCATAGCTCTAATTC
GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGGTAGCAACGT
CTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAATGCTATGTTTACATGGTTTG
GCAATTCTAGCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGC
CTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCTGGTTTGCTC
TTGGAGGGAAACAGAGTTATACAAATAAAAACACTCCTCAGGATATTATTACTAGAGAGC
CTCACTTGTATGCATTCTCAT