Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d042039_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:148145123:148148309:-1 gene:Zm00001d042039 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:empty pericarp5 description: empty pericarp5
Sequence

ATGGAGGCCTTCTACCTCCACCTTCTCCGCTCCTGCGCGGCGCTACCGCACGTCGCGGCA
GTGCACGCCCACCTTGCGCGCGCGCACCCAAACGCCTCTCTCTTCCTCCGCAACTGCCTC
CTGGCCTCCTACTGCCGCCTCGGGGTTGGGGCCCCACTCCACGCCGCCCGCCTGCTCGAC
GAAATGCCCCGCCGCAACGCCGTCTCCTACAACCTCGTCATCGTCGCCTATTCCCGCGCG
GGACTCCCGGCCCTCTCCCTGGCGACGTTCGCGCGCGCGCGGGCGTGGGCCAGGGTGGTC
GACCGGTTCACGTACGCCGCGGCGCTCGCCGCGTGCTCTCGGGCGCTCGACGTGAGGACG
GGGAAGGCCGTGCACGCCATGGTCGTCCTGGGAGGTCTCGGCAACGGGTTGTTCCTGTCC
AACTCGGTCGCCAGCATGTACGCCAGGTGCGGCGAGATGGGCGAGGCCAGGCGCGTGTTT
GATGCAGCCGAGGAGCGTGACGACGTCTCGTGGAACGCGCTGCTCTCCGGGTACGTCCGT
GCCGGTGCACGTGAGGAGACGCTGGAGGTGTTCTCTCTGATGTGCCGGCATGGTCTGGGG
TGGAACTCGTTCGCGCTTGGGAGCATCATCAAGTGCTGTGCCTCCTCCTCTTCTTATGCT
GCTGCTGGTGATGTCGGAGGAGGGCGCATCGCTGAGGCGGTTCATGGGTGCGTGGTGAAG
GCTGGACTGGACGCCGACCTGTTCCTCGCGAGCGCAATGATCGACATGTACGCTAAGAGA
GGCGCCTTGACCAACGCGGTTGCTCTTTTCAAGTCAGTGCCAGACCCGAATGTGATTGTT
TTAAATGCGATGATTGCAGGATTCTGTCGTGAGGAAGCAGCCGACGTCGCTAGAGAAGCT
TTGGGCCTGTATTCAGAGCTGCAGAGCCGAGGGATGCAGCCTTCTGAGTTCTCATTCTCA
AGTATCCTGCGTGCATGTAACCTGGCCGGTGAATTTGGATTCGGGAAACAGATACATGGC
CAAGTGCTCAAGCACAGCTTCCAAGGCGATGTCTATATCGGGAGCGCACTCATTGACTTG
TACTCTGGCTCTGGTTGCATGGAGGACGGATACAGGTGTTTCAGATCCCTGCCTAAGCAG
GACGTCGTCATCTGGACGTCAGTGATTTCAGGGTGCGTTCAGAACGAGCTTTTTGAGGAG
GCACTGAGGCTGTTCCAAGAATCAGTACGCTGTGGACTGAGACCTGATGTTTTCGCGATG
TCGAGCGTGATGAACGCATGTGCCAGTTTAGCTGTTGCAAGGACCGGTGAGCAGATCCAG
TGCCTTGCTGTAAAGTCTGGCTTTAACCGCTTCACCGCCATGGGGAATTCCTTCATACAC
ATGTGTGCTAGGTCAGGGGATGTTGATGCTGCCACCCGGAGGTTTCAGGAGATGGAATCG
CGTGATGTTGTCTCTTGGTCCGCGGTGATATCAAGCCACGCGCACCATGGCTGTGCAAGG
GATGCTTTATGCGTTTTCAATGAAATGCTGGATGCGAAGGTGGCACCGCCTAACGAGATC
ACTTTTCTCAGCATCCTTACTGCATGTAGTCATGGAGGATTGGTTGATGAGGGACTCAGG
TATTATGGAATTATGAATGATGAATATGGATTGAGCCCAACCATAAAGCATTGCACCTGT
GTTGTTGATCTTCTTGGACGAGCCGGGAGGTTAGCCGATGCTGAGGCTTTCATAAGGGAT
TCAGCATTCCATGACGATGCTGTGGTCTGGCGGTCTTTGCTGGCCTCGTGTCGTATCCAC
GGAGACATGGAGAGAGGCCAACTTGTGGCGGACAAGATAATGGATCTGGAGCCCACTTCC
TCAGCATCCTACGTAATTCTCTACAACATGTATCTGGATGCTGGCGAGCTGTCCTCGGCT
TCAAAGACTCGAGATCTGATGAAAGAGCGAGGCGTGAAGAAAGAGCCTGGTCTTAGTTGG
ATCGAGCTGAGCTCTGGAGTTCACTCTTTTGTTGCCGGTGACAAGTCCCATCCAGAGAGC
AAAGCAATATACAGAAAAGTGGCAGAGATGGTTTCCAAGGTGGCGGGCATCTCTAGCAGG
GAGCAGGATTTGGCGGGTTGCCACAGCGAAAAACTAGCTGTGGCATTTGGAATGATCCAT
TTGCCGCAATCAGCTCCGATCCGAGTGATGAAGAACCTGAGAGTTTGCCGTGACTGCCAC
TCGACCATGGAGCTGATATCCAAGAGTGAGAGGAGAGAGATAATCTTGCGAGACGCGATT
CGCTTCCATCGCTTCAGAGACGGTTCCTGTTCCTGTGGCGGTTACTGGTGA

Peptide Sequence

PEP ID

Zm00001d042039_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:148145123:148148309:-1 gene:Zm00001d042039 transcript:Zm00001d042039_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:empty pericarp5 description: empty pericarp5
Sequence

MEAFYLHLLRSCAALPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLLD
EMPRRNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRT
GKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVR
AGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVK
AGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREA
LGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDL
YSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAM
SSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMES
RDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLR
YYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIH
GDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGELSSASKTRDLMKERGVKKEPGLSW
IELSSGVHSFVAGDKSHPESKAIYRKVAEMVSKVAGISSREQDLAGCHSEKLAVAFGMIH
LPQSAPIRVMKNLRVCRDCHSTMELISKSERREIILRDAIRFHRFRDGSCSCGGYW

Transcript Sequence

Transcript ID

Zm00001d042039_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:148145123:148148309:-1 gene:Zm00001d042039 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:empty pericarp5 description: empty pericarp5
Sequence

GTCCCCGTTCTTGAGCAATCATCTGCCTCCCTTTGTTCCCGCACAATCCCTAGTTGGGAG
GGGGGCCATGGGGCGGCTGCGGCCAGATGGCCAGTAACGTGCAAAGATGAGCAGTAGATT
ACTATCGGTCTGCTCCATCGCCGGCGTCCATGGAGGCCTTCTACCTCCACCTTCTCCGCT
CCTGCGCGGCGCTACCGCACGTCGCGGCAGTGCACGCCCACCTTGCGCGCGCGCACCCAA
ACGCCTCTCTCTTCCTCCGCAACTGCCTCCTGGCCTCCTACTGCCGCCTCGGGGTTGGGG
CCCCACTCCACGCCGCCCGCCTGCTCGACGAAATGCCCCGCCGCAACGCCGTCTCCTACA
ACCTCGTCATCGTCGCCTATTCCCGCGCGGGACTCCCGGCCCTCTCCCTGGCGACGTTCG
CGCGCGCGCGGGCGTGGGCCAGGGTGGTCGACCGGTTCACGTACGCCGCGGCGCTCGCCG
CGTGCTCTCGGGCGCTCGACGTGAGGACGGGGAAGGCCGTGCACGCCATGGTCGTCCTGG
GAGGTCTCGGCAACGGGTTGTTCCTGTCCAACTCGGTCGCCAGCATGTACGCCAGGTGCG
GCGAGATGGGCGAGGCCAGGCGCGTGTTTGATGCAGCCGAGGAGCGTGACGACGTCTCGT
GGAACGCGCTGCTCTCCGGGTACGTCCGTGCCGGTGCACGTGAGGAGACGCTGGAGGTGT
TCTCTCTGATGTGCCGGCATGGTCTGGGGTGGAACTCGTTCGCGCTTGGGAGCATCATCA
AGTGCTGTGCCTCCTCCTCTTCTTATGCTGCTGCTGGTGATGTCGGAGGAGGGCGCATCG
CTGAGGCGGTTCATGGGTGCGTGGTGAAGGCTGGACTGGACGCCGACCTGTTCCTCGCGA
GCGCAATGATCGACATGTACGCTAAGAGAGGCGCCTTGACCAACGCGGTTGCTCTTTTCA
AGTCAGTGCCAGACCCGAATGTGATTGTTTTAAATGCGATGATTGCAGGATTCTGTCGTG
AGGAAGCAGCCGACGTCGCTAGAGAAGCTTTGGGCCTGTATTCAGAGCTGCAGAGCCGAG
GGATGCAGCCTTCTGAGTTCTCATTCTCAAGTATCCTGCGTGCATGTAACCTGGCCGGTG
AATTTGGATTCGGGAAACAGATACATGGCCAAGTGCTCAAGCACAGCTTCCAAGGCGATG
TCTATATCGGGAGCGCACTCATTGACTTGTACTCTGGCTCTGGTTGCATGGAGGACGGAT
ACAGGTGTTTCAGATCCCTGCCTAAGCAGGACGTCGTCATCTGGACGTCAGTGATTTCAG
GGTGCGTTCAGAACGAGCTTTTTGAGGAGGCACTGAGGCTGTTCCAAGAATCAGTACGCT
GTGGACTGAGACCTGATGTTTTCGCGATGTCGAGCGTGATGAACGCATGTGCCAGTTTAG
CTGTTGCAAGGACCGGTGAGCAGATCCAGTGCCTTGCTGTAAAGTCTGGCTTTAACCGCT
TCACCGCCATGGGGAATTCCTTCATACACATGTGTGCTAGGTCAGGGGATGTTGATGCTG
CCACCCGGAGGTTTCAGGAGATGGAATCGCGTGATGTTGTCTCTTGGTCCGCGGTGATAT
CAAGCCACGCGCACCATGGCTGTGCAAGGGATGCTTTATGCGTTTTCAATGAAATGCTGG
ATGCGAAGGTGGCACCGCCTAACGAGATCACTTTTCTCAGCATCCTTACTGCATGTAGTC
ATGGAGGATTGGTTGATGAGGGACTCAGGTATTATGGAATTATGAATGATGAATATGGAT
TGAGCCCAACCATAAAGCATTGCACCTGTGTTGTTGATCTTCTTGGACGAGCCGGGAGGT
TAGCCGATGCTGAGGCTTTCATAAGGGATTCAGCATTCCATGACGATGCTGTGGTCTGGC
GGTCTTTGCTGGCCTCGTGTCGTATCCACGGAGACATGGAGAGAGGCCAACTTGTGGCGG
ACAAGATAATGGATCTGGAGCCCACTTCCTCAGCATCCTACGTAATTCTCTACAACATGT
ATCTGGATGCTGGCGAGCTGTCCTCGGCTTCAAAGACTCGAGATCTGATGAAAGAGCGAG
GCGTGAAGAAAGAGCCTGGTCTTAGTTGGATCGAGCTGAGCTCTGGAGTTCACTCTTTTG
TTGCCGGTGACAAGTCCCATCCAGAGAGCAAAGCAATATACAGAAAAGTGGCAGAGATGG
TTTCCAAGGTGGCGGGCATCTCTAGCAGGGAGCAGGATTTGGCGGGTTGCCACAGCGAAA
AACTAGCTGTGGCATTTGGAATGATCCATTTGCCGCAATCAGCTCCGATCCGAGTGATGA
AGAACCTGAGAGTTTGCCGTGACTGCCACTCGACCATGGAGCTGATATCCAAGAGTGAGA
GGAGAGAGATAATCTTGCGAGACGCGATTCGCTTCCATCGCTTCAGAGACGGTTCCTGTT
CCTGTGGCGGTTACTGGTGATGATGACCAACCCAAGGCTCAAAAGCGCGACATAGCCCAC
CTATTGCTTGACGCGAGCACCTGACATGGCTTCCGTTGGGGGCAAGCTAGGTCACTGCCG
GTGCACATGACGCTGCATGCATGGCTTAATTAAGTTACTCAACCCCCACTGTAGCTGGAT
ACCACAGGCTGATACACGGTGTTGTATATATAGTCTGTGTCGTCAAGTGAAACGACCAGG
AACAAACCCTACAACGTGTGATGCCAAGTGTCTATGGGGACAATGGTCTTTTCTTTTGGA
CCTAAATACAAGCGGTGTATTCTATGCGACCGAATCAAGACTGCGGTATGAACATGTTCA
AGATTTCGAGCTTCACCAATACAAGTTCGTTTAAAAAGCAACAAAGAGAATATTGTGCTA
CTAGAAGCATACGTCAAATTTTGGTCTTTGGACTTTATCGATTGGTATCTCCAAGTCGTA
TCTTTCTTTCATATGTAATGAATGTTGGGTTTGCTAAAACATGCAAGTAATAACTACATT
CAAAATATCTATTGTAATGAGACAATTGATCATCTTTTTTTCCACTACCAACTTGCTAAA
TTTATTTGACGTTTAGTTCCAATCAGA