Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d042026_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:147731588:147734168:1 gene:Zm00001d042026 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chlorophyllide a oxygenase chloroplastic
Sequence	ATGCCGATGCTCGGTCGTTGCGTGCAGGACGTCGGCCGCTATGGCGGGATCAAGGTGTAC GCCGTGCTCAGGGAAGACGGGGCCGAGTTCGCCCGGAACAACAACCTGGAGGCCCTGTTC CAGGTGGACGACCCCGGGCCGCGGGCCCCCGTCAAGAAGTTCCTGGACGTGAACGAGGCT CTGGAGGTGGTCCGCTTCGACATCCAGTACTGCGACTGGAGGGCGCGCCAGGATCTCCTC ACCATCATGCTTCTCCACAGCAAGGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTC AAGTCCATCGGGACCTTGAGGAAAGAGCTCGCCGAGCTACAGCAGGAGCTGGAAAAAGCT CACAATCAGGTCCATCTCTCGGAAGCCAGAGTCTCATCGGCGCTCGACAAGCTAGCGCAT ATGGAGACCCTGGTGAGCGCACCATCCACAGCCGAGCCGCCCACTTCTTCCTCCCTGTCT GCAACTGCAAGCAGCACCGCCCGTGTCCGAGCCAAGAACAAACAGCCACGTCGGAGGCTT GACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTC GCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGGTGCCAATCGACTGCTTCGAGGAG CAGTGGGTGATCTTCCGAGGCAAAGACGGAAGGCCCGGGTGTGTTCAGAACACATGCGCC CACAGGGCATGCCCGCTGCATCTTGGTTCAGTGAACGAGGGCAGGATCCAGTGCCCTTAC CATGGTTGGGAGTACTCGACCGATGGCAAGTGCGAAAAGATGCCATCCACAAAGATGCTC GACGTGCGCATCCAGTCGCTGCCATGCTTTGAGCAGGAAGGGATGGTCTGGATCTGGCCC GGGGACGACCCACCCAAGGCTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTC CACGCAGAGATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTG GACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCA AGTTTGGTCAAGTTCCTGACACCCGCGTCTGGGCTCCAAGGGTACTGGGACCCGTACCCG ATCGACATGGAGTTCCGGCCACCGTGCATGGTCCTATCGACCATCGGCATCTCCAAGCCC GGGAAGCTACAAGGGAAGAGCACGAGGCAGTGCTCCACGCACCTCCACCAGCTCCACGTC TGCCTGCCCTCCTCCCGGAACAAGACCAGGCTGCTGTACCGGATGTCGCTGGACTTCGCG CCGTGGCTCAAGCACGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGG ATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGATCCGG TACCGGCTGTGGAGGGACGCCGTCGAGAGGGGCGCCGACGACCGGTTGCCGTTCAGCAGC ACCCAAGCTGAGAGTTTGTCGTAG

Peptide Sequence

PEP ID	Zm00001d042026_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:147731588:147734168:1 gene:Zm00001d042026 transcript:Zm00001d042026_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chlorophyllide a oxygenase chloroplastic
Sequence	MPMLGRCVQDVGRYGGIKVYAVLREDGAEFARNNNLEALFQVDDPGPRAPVKKFLDVNEA LEVVRFDIQYCDWRARQDLLTIMLLHSKVVEVLNPLAREFKSIGTLRKELAELQQELEKA HNQVHLSEARVSSALDKLAHMETLVSAPSTAEPPTSSSLSATASSTARVRAKNKQPRRRL DVSGPVKPYNPSLKNFWYPVAFSSDLKAPDTMVPIDCFEEQWVIFRGKDGRPGCVQNTCA HRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKMLDVRIQSLPCFEQEGMVWIWP GDDPPKATIPSLLPPSGFTVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP SLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLQGKSTRQCSTHLHQLHV CLPSSRNKTRLLYRMSLDFAPWLKHVLNEDLRLVLGQQEGMIDGANVWNWPVSYDKLGIR YRLWRDAVERGADDRLPFSSTQAESLS

Transcript Sequence

Transcript ID	Zm00001d042026_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:147731588:147734168:1 gene:Zm00001d042026 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chlorophyllide a oxygenase chloroplastic
Sequence	ATGCCGATGCTCGGTCGTTGCGTGCAGGACGTCGGCCGCTATGGCGGGATCAAGGTGTAC GCCGTGCTCAGGGAAGACGGGGCCGAGTTCGCCCGGAACAACAACCTGGAGGCCCTGTTC CAGGTGGACGACCCCGGGCCGCGGGCCCCCGTCAAGAAGTTCCTGGACGTGAACGAGGCT CTGGAGGTGGTCCGCTTCGACATCCAGTACTGCGACTGGAGGGCGCGCCAGGATCTCCTC ACCATCATGCTTCTCCACAGCAAGGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTC AAGTCCATCGGGACCTTGAGGAAAGAGCTCGCCGAGCTACAGCAGGAGCTGGAAAAAGCT CACAATCAGGTCCATCTCTCGGAAGCCAGAGTCTCATCGGCGCTCGACAAGCTAGCGCAT ATGGAGACCCTGGTGAGCGCACCATCCACAGCCGAGCCGCCCACTTCTTCCTCCCTGTCT GCAACTGCAAGCAGCACCGCCCGTGTCCGAGCCAAGAACAAACAGCCACGTCGGAGGCTT GACGTGTCCGGCCCAGTGAAGCCTTACAACCCCAGCCTCAAGAACTTCTGGTACCCAGTC GCCTTCTCCAGCGATCTCAAGGCTCCTGACACCATGGTGCCAATCGACTGCTTCGAGGAG CAGTGGGTGATCTTCCGAGGCAAAGACGGAAGGCCCGGGTGTGTTCAGAACACATGCGCC CACAGGGCATGCCCGCTGCATCTTGGTTCAGTGAACGAGGGCAGGATCCAGTGCCCTTAC CATGGTTGGGAGTACTCGACCGATGGCAAGTGCGAAAAGATGCCATCCACAAAGATGCTC GACGTGCGCATCCAGTCGCTGCCATGCTTTGAGCAGGAAGGGATGGTCTGGATCTGGCCC GGGGACGACCCACCCAAGGCTACCATCCCTTCTCTGCTGCCTCCTTCAGGATTTACGGTC CACGCAGAGATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTG GACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCA AGTTTGGTCAAGTTCCTGACACCCGCGTCTGGGCTCCAAGGGTACTGGGACCCGTACCCG ATCGACATGGAGTTCCGGCCACCGTGCATGGTCCTATCGACCATCGGCATCTCCAAGCCC GGGAAGCTACAAGGGAAGAGCACGAGGCAGTGCTCCACGCACCTCCACCAGCTCCACGTC TGCCTGCCCTCCTCCCGGAACAAGACCAGGCTGCTGTACCGGATGTCGCTGGACTTCGCG CCGTGGCTCAAGCACGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGG ATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGATCCGG TACCGGCTGTGGAGGGACGCCGTCGAGAGGGGCGCCGACGACCGGTTGCCGTTCAGCAGC ACCCAAGCTGAGAGTTTGTCGTAGCGACCGGAACGGGACGGGACCTCTTCCTCGTCGCAT TTCTCCGCAAGACGACGGACGGACAGCCAGAGTTAATGTGACCTAGGCGTACGTGCGTCT CTCTCTCTCTCTCTGCGCGGTTCATCGTTCACCTCGGGCTGCTGCGCACTGAAGGATTCT GGAAGGGTGAAGGTTGACGGCCGGAGACGATGATGGGCAGCATCATGGTCTATGGTGTCC ACATGCATGTACACTACTAGCGACGACGGCATCATGGGATGCAATTGTAATCTGAGATTG ATCTCTTTTTTTTTTCACCCTTTCTGTGTAAAGATTCAGCAAATTGTTGCGTTACTCTTC CAAAGCATGTATAATCAACTACGGAGAAGTGTTCATATATATAAATATGAGAAATTGCAG CT