Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041994_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:146858511:146861740:1 gene:Zm00001d041994 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat (LRR) family protein
Sequence

ATGGGGCGGCTGACCGAGGAGCAGGCGGCGCGCGAGGCGGGCTCGGCGGGGACCAACGCT
ATGTCCCTCAAGCTCACACACCGCGCTCTCTCCGACGTGTCGTGCCTGAGCAGCTTCAAG
AACCTGGAGCACCTCGACCTCGGCTTCAACTGCCTCGTCACCCTCGAGGGTTTGTCCTCC
TGTGCCAATTTGAAGTGGCTTTCGGTTAAGGAAAACAAGCTTGTGAGCTTAAAAGGTGTT
GAGGGGCTCTCAAAGCTGCAGGTACTGAATGCTGGCAAGAACGAACTTACAAAAATGGAC
GAGGTCACATCTTTAACAAGCCTGGGAGCATTGATTCTTAATGATAACAATATTTCTTCC
ATCTGCAAGCTTGATCAGTTGCAACAGTTGAATACACTTGTTCTCTCTAAGAACCCTGTC
TTTACCATTGGCAATGCTTTGGTCAAGGCTAAGTCTATGAAAAAGCTATCCTTGTCTCAC
TGCCAAATAGAAAATATTGGATCTTCTCTTGTTAAGTGTGTGGAACTGAAGGAACTTAGG
CTTTCTCACAACAAGATCAGTACAATCCCTTCAGATTTGGCCAAAAATGTGAAGATCTTG
AGCCTTGATTTGGGGAATAACTTTATTGAGAGGAGTTCAGATTTGAAGGTACTTTCTGAA
TTGCGCTACTTGAGGAACCTTAATTTGCAGGGAAATCCTGTTTCCAAGAAAGACAGTCTT
GTCAAAAAGGTTAAGAAATCTGTGCCAACCTTGCGCATACTGAACGCAAAGCCCCTAGAG
GCCACCTCCAAGAGTGATAAGAGGTCTACAAAAGAGAATCCTCCGAGCAAAGATGAAGAC
CTCATTGGGATTGATGCGAAGAAGAAGGATAAAAGGAAGGGATCTAAACAAGAGGTAAAG
GGCCTTGAAGAGCTTGAAGTCCAGAGTGTTTCTACAGGTATCACCACTTCGAACCCTGGT
AAACTTGAAGTGCCAGACAGTAAGGAAAAGAAAAAGGTCAAGGAAGCTAAGACGAAGAAA
TCTGAAGAGCCGTACCATGCCAATAACAGTAGCTTAAAGAACAAAGAAGTTCAATCTTTT
GTCTATGATACCAGCACGAAGGACAAGAAGGAAGCCAAGAGGAAGAAATTTGTTGACGAA
GAAGATGTAGATGCTGAAGGAATTGACAATACAGAAATCTCGTTTGCAGATTTAATGTTT
TCCAATGTGGGCAATCCAGAGACTAAGCTAAAGAACATCTCAACCCTGGAAGCAGCTCCT
GATGGAAAATCTGTTGGAGGTCTGGTAATTGATCACACAAAGAAGAGAAAGAAACCAAAA
GGTGTTGTCACCATCACTGACTCCTCAGCTCTTAAGATGTTTTCCTCAATGCCAGAGGTA
GGAGCAGGAGGGCTTGGCCTGTCAGGATGGGATGAGTAG

Peptide Sequence

PEP ID

Zm00001d041994_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:146858511:146861740:1 gene:Zm00001d041994 transcript:Zm00001d041994_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat (LRR) family protein
Sequence

MGRLTEEQAAREAGSAGTNAMSLKLTHRALSDVSCLSSFKNLEHLDLGFNCLVTLEGLSS
CANLKWLSVKENKLVSLKGVEGLSKLQVLNAGKNELTKMDEVTSLTSLGALILNDNNISS
ICKLDQLQQLNTLVLSKNPVFTIGNALVKAKSMKKLSLSHCQIENIGSSLVKCVELKELR
LSHNKISTIPSDLAKNVKILSLDLGNNFIERSSDLKVLSELRYLRNLNLQGNPVSKKDSL
VKKVKKSVPTLRILNAKPLEATSKSDKRSTKENPPSKDEDLIGIDAKKKDKRKGSKQEVK
GLEELEVQSVSTGITTSNPGKLEVPDSKEKKKVKEAKTKKSEEPYHANNSSLKNKEVQSF
VYDTSTKDKKEAKRKKFVDEEDVDAEGIDNTEISFADLMFSNVGNPETKLKNISTLEAAP
DGKSVGGLVIDHTKKRKKPKGVVTITDSSALKMFSSMPEVGAGGLGLSGWDE

Transcript Sequence

Transcript ID

Zm00001d041994_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:146858511:146861740:1 gene:Zm00001d041994 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat (LRR) family protein
Sequence

ATCAGAAGGAAGACCAATCAAAGGGAGGCAAACGCCATAGCGGCCAATCACTTGGCGGCG
GCGGCGGCGGCGATGGGGCGGCTGACCGAGGAGCAGGCGGCGCGCGAGGCGGGCTCGGCG
GGGACCAACGCTATGTCCCTCAAGCTCACACACCGCGCTCTCTCCGACGTGTCGTGCCTG
AGCAGCTTCAAGAACCTGGAGCACCTCGACCTCGGCTTCAACTGCCTCGTCACCCTCGAG
GGTTTGTCCTCCTGTGCCAATTTGAAGTGGCTTTCGGTTAAGGAAAACAAGCTTGTGAGC
TTAAAAGGTGTTGAGGGGCTCTCAAAGCTGCAGGTACTGAATGCTGGCAAGAACGAACTT
ACAAAAATGGACGAGGTCACATCTTTAACAAGCCTGGGAGCATTGATTCTTAATGATAAC
AATATTTCTTCCATCTGCAAGCTTGATCAGTTGCAACAGTTGAATACACTTGTTCTCTCT
AAGAACCCTGTCTTTACCATTGGCAATGCTTTGGTCAAGGCTAAGTCTATGAAAAAGCTA
TCCTTGTCTCACTGCCAAATAGAAAATATTGGATCTTCTCTTGTTAAGTGTGTGGAACTG
AAGGAACTTAGGCTTTCTCACAACAAGATCAGTACAATCCCTTCAGATTTGGCCAAAAAT
GTGAAGATCTTGAGCCTTGATTTGGGGAATAACTTTATTGAGAGGAGTTCAGATTTGAAG
GTACTTTCTGAATTGCGCTACTTGAGGAACCTTAATTTGCAGGGAAATCCTGTTTCCAAG
AAAGACAGTCTTGTCAAAAAGGTTAAGAAATCTGTGCCAACCTTGCGCATACTGAACGCA
AAGCCCCTAGAGGCCACCTCCAAGAGTGATAAGAGGTCTACAAAAGAGAATCCTCCGAGC
AAAGATGAAGACCTCATTGGGATTGATGCGAAGAAGAAGGATAAAAGGAAGGGATCTAAA
CAAGAGGTAAAGGGCCTTGAAGAGCTTGAAGTCCAGAGTGTTTCTACAGGTATCACCACT
TCGAACCCTGGTAAACTTGAAGTGCCAGACAGTAAGGAAAAGAAAAAGGTCAAGGAAGCT
AAGACGAAGAAATCTGAAGAGCCGTACCATGCCAATAACAGTAGCTTAAAGAACAAAGAA
GTTCAATCTTTTGTCTATGATACCAGCACGAAGGACAAGAAGGAAGCCAAGAGGAAGAAA
TTTGTTGACGAAGAAGATGTAGATGCTGAAGGAATTGACAATACAGAAATCTCGTTTGCA
GATTTAATGTTTTCCAATGTGGGCAATCCAGAGACTAAGCTAAAGAACATCTCAACCCTG
GAAGCAGCTCCTGATGGAAAATCTGTTGGAGGTCTGGTAATTGATCACACAAAGAAGAGA
AAGAAACCAAAAGGTGTTGTCACCATCACTGACTCCTCAGCTCTTAAGATGTTTTCCTCA
ATGCCAGAGGTAGGAGCAGGAGGGCTTGGCCTGTCAGGATGGGATGAGTAGCGTCTAGCT
CTCTAGTACCATAAGTTTGCTGCCTGATGAATATCGTTTTTTGGTGAAAACCTCAATTTT
ATGTGAACTGAGCAGCATTTTCTTCTCTTCCCATCAAGTGCATTTATGATGTGTGATTTG
AGGAACCAAGCCCCTCTAGATGAGTGGTGCATCTTCGGTTCAACCAATAATTTAGTGGAA
TAACTACTTTTCTCACGCTTGCATGAATTATAAACTACTCCGTCCATTCTAAATTATAAA
ATATTTTACTTTTCT